Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03554

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03551 and MPMX19_03552 are separated by 191 nucleotidesMPMX19_03552 and MPMX19_03553 overlap by 4 nucleotidesMPMX19_03553 and MPMX19_03554 are separated by 43 nucleotidesMPMX19_03554 and MPMX19_03555 are separated by 73 nucleotides MPMX19_03551: MPMX19_03551 - NAD(P)H azoreductase, at 971,978 to 972,844 _03551 MPMX19_03552: MPMX19_03552 - hypothetical protein, at 973,036 to 973,290 _03552 MPMX19_03553: MPMX19_03553 - hypothetical protein, at 973,287 to 973,646 _03553 MPMX19_03554: MPMX19_03554 - hypothetical protein, at 973,690 to 974,352 _03554 MPMX19_03555: MPMX19_03555 - Aerobic C4-dicarboxylate transport protein, at 974,426 to 975,805 _03555 Position (kb) 973 974 975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 972.704 kb on + strand, within MPMX19_03551at 972.704 kb on + strand, within MPMX19_03551at 972.704 kb on + strand, within MPMX19_03551at 972.731 kb on + strand, within MPMX19_03551at 972.731 kb on + strand, within MPMX19_03551at 972.731 kb on + strand, within MPMX19_03551at 972.809 kb on + strandat 972.809 kb on + strandat 972.809 kb on + strandat 972.809 kb on + strandat 972.933 kb on - strandat 972.933 kb on - strandat 972.947 kb on + strandat 972.948 kb on - strandat 972.975 kb on + strandat 972.976 kb on - strandat 972.995 kb on + strandat 972.996 kb on - strandat 973.005 kb on - strandat 973.109 kb on - strand, within MPMX19_03552at 973.109 kb on - strand, within MPMX19_03552at 973.109 kb on - strand, within MPMX19_03552at 973.184 kb on + strand, within MPMX19_03552at 973.184 kb on + strand, within MPMX19_03552at 973.184 kb on + strand, within MPMX19_03552at 973.184 kb on + strand, within MPMX19_03552at 973.185 kb on - strand, within MPMX19_03552at 973.185 kb on - strand, within MPMX19_03552at 973.185 kb on - strand, within MPMX19_03552at 973.185 kb on - strand, within MPMX19_03552at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.380 kb on + strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.381 kb on - strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.531 kb on - strand, within MPMX19_03553at 973.531 kb on - strand, within MPMX19_03553at 973.533 kb on + strand, within MPMX19_03553at 973.533 kb on + strand, within MPMX19_03553at 973.533 kb on + strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.684 kb on + strandat 973.685 kb on - strandat 973.685 kb on - strandat 973.685 kb on - strandat 973.685 kb on - strandat 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.834 kb on + strand, within MPMX19_03554at 973.834 kb on + strand, within MPMX19_03554at 973.835 kb on - strand, within MPMX19_03554at 973.893 kb on + strand, within MPMX19_03554at 973.894 kb on - strand, within MPMX19_03554at 973.894 kb on - strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.137 kb on - strand, within MPMX19_03554at 974.137 kb on - strand, within MPMX19_03554at 974.137 kb on - strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.222 kb on - strand, within MPMX19_03554at 974.222 kb on - strand, within MPMX19_03554at 974.844 kb on + strand, within MPMX19_03555at 974.844 kb on + strand, within MPMX19_03555at 974.844 kb on + strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.874 kb on + strand, within MPMX19_03555at 974.874 kb on + strand, within MPMX19_03555at 974.874 kb on + strand, within MPMX19_03555at 974.875 kb on - strand, within MPMX19_03555at 975.003 kb on + strand, within MPMX19_03555at 975.004 kb on - strand, within MPMX19_03555at 975.004 kb on - strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.135 kb on + strand, within MPMX19_03555at 975.135 kb on + strand, within MPMX19_03555at 975.135 kb on + strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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972,704 + MPMX19_03551 0.84 -0.2
972,704 + MPMX19_03551 0.84 +1.5
972,704 + MPMX19_03551 0.84 -1.1
972,731 + MPMX19_03551 0.87 -0.1
972,731 + MPMX19_03551 0.87 -0.2
972,731 + MPMX19_03551 0.87 -2.4
972,809 + -0.2
972,809 + -0.3
972,809 + -0.6
972,809 + +1.1
972,933 - -0.7
972,933 - -1.6
972,947 + -1.7
972,948 - -1.1
972,975 + -1.1
972,976 - -0.5
972,995 + +0.7
972,996 - -0.9
973,005 - -0.3
973,109 - MPMX19_03552 0.29 +0.5
973,109 - MPMX19_03552 0.29 -3.0
973,109 - MPMX19_03552 0.29 -0.9
973,184 + MPMX19_03552 0.58 +0.5
973,184 + MPMX19_03552 0.58 -0.4
973,184 + MPMX19_03552 0.58 -0.1
973,184 + MPMX19_03552 0.58 -1.7
973,185 - MPMX19_03552 0.58 +0.1
973,185 - MPMX19_03552 0.58 +0.1
973,185 - MPMX19_03552 0.58 -0.6
973,185 - MPMX19_03552 0.58 -1.4
973,380 + MPMX19_03553 0.26 -0.1
973,380 + MPMX19_03553 0.26 -0.8
973,380 + MPMX19_03553 0.26 -0.5
973,380 + MPMX19_03553 0.26 -0.1
973,380 + MPMX19_03553 0.26 -0.5
973,380 + MPMX19_03553 0.26 +0.5
973,380 + MPMX19_03553 0.26 -0.4
973,380 + MPMX19_03553 0.26 +0.5
973,380 + MPMX19_03553 0.26 -0.6
973,380 + MPMX19_03553 0.26 -1.7
973,380 + MPMX19_03553 0.26 -0.3
973,380 + MPMX19_03553 0.26 +0.1
973,380 + MPMX19_03553 0.26 +0.0
973,380 + MPMX19_03553 0.26 -1.7
973,380 + MPMX19_03553 0.26 -0.6
973,380 + MPMX19_03553 0.26 -1.7
973,380 + MPMX19_03553 0.26 +0.7
973,380 + MPMX19_03553 0.26 -0.6
973,380 + MPMX19_03553 0.26 -0.9
973,380 + MPMX19_03553 0.26 -0.0
973,380 + MPMX19_03553 0.26 -0.3
973,380 + MPMX19_03553 0.26 +0.4
973,380 + MPMX19_03553 0.26 -0.0
973,380 + MPMX19_03553 0.26 -0.3
973,380 + MPMX19_03553 0.26 -0.4
973,381 - MPMX19_03553 0.26 -0.3
973,381 - MPMX19_03553 0.26 -1.6
973,381 - MPMX19_03553 0.26 +0.3
973,381 - MPMX19_03553 0.26 -0.1
973,381 - MPMX19_03553 0.26 +0.6
973,381 - MPMX19_03553 0.26 -0.0
973,381 - MPMX19_03553 0.26 +0.4
973,381 - MPMX19_03553 0.26 -1.1
973,381 - MPMX19_03553 0.26 -1.1
973,381 - MPMX19_03553 0.26 -1.4
973,381 - MPMX19_03553 0.26 -1.1
973,381 - MPMX19_03553 0.26 -1.4
973,381 - MPMX19_03553 0.26 -0.5
973,381 - MPMX19_03553 0.26 -1.2
973,381 - MPMX19_03553 0.26 +0.1
973,381 - MPMX19_03553 0.26 +1.2
973,381 - MPMX19_03553 0.26 -1.5
973,530 + MPMX19_03553 0.68 +0.0
973,530 + MPMX19_03553 0.68 -1.2
973,530 + MPMX19_03553 0.68 +0.3
973,530 + MPMX19_03553 0.68 +0.1
973,530 + MPMX19_03553 0.68 -1.3
973,530 + MPMX19_03553 0.68 -1.4
973,531 - MPMX19_03553 0.68 +1.2
973,531 - MPMX19_03553 0.68 -0.0
973,533 + MPMX19_03553 0.68 -0.5
973,533 + MPMX19_03553 0.68 -0.4
973,533 + MPMX19_03553 0.68 -1.4
973,534 - MPMX19_03553 0.69 +0.9
973,534 - MPMX19_03553 0.69 -0.9
973,534 - MPMX19_03553 0.69 -1.5
973,534 - MPMX19_03553 0.69 +0.7
973,534 - MPMX19_03553 0.69 +2.1
973,684 + -0.9
973,685 - -1.0
973,685 - -0.1
973,685 - -0.3
973,685 - -0.6
973,792 + MPMX19_03554 0.15 -2.0
973,792 + MPMX19_03554 0.15 -1.3
973,792 + MPMX19_03554 0.15 -0.8
973,792 + MPMX19_03554 0.15 +0.3
973,792 + MPMX19_03554 0.15 -2.1
973,792 + MPMX19_03554 0.15 -1.6
973,792 + MPMX19_03554 0.15 -0.3
973,793 - MPMX19_03554 0.16 +1.7
973,793 - MPMX19_03554 0.16 +0.6
973,793 - MPMX19_03554 0.16 -0.5
973,793 - MPMX19_03554 0.16 -1.1
973,793 - MPMX19_03554 0.16 -1.4
973,793 - MPMX19_03554 0.16 -0.3
973,793 - MPMX19_03554 0.16 -0.7
973,793 - MPMX19_03554 0.16 -0.1
973,793 - MPMX19_03554 0.16 -1.9
973,793 - MPMX19_03554 0.16 -0.0
973,793 - MPMX19_03554 0.16 +0.3
973,793 - MPMX19_03554 0.16 -0.6
973,793 - MPMX19_03554 0.16 -0.8
973,834 + MPMX19_03554 0.22 -0.5
973,834 + MPMX19_03554 0.22 -1.0
973,835 - MPMX19_03554 0.22 -1.4
973,893 + MPMX19_03554 0.31 -0.3
973,894 - MPMX19_03554 0.31 -2.0
973,894 - MPMX19_03554 0.31 -0.6
974,136 + MPMX19_03554 0.67 -0.3
974,136 + MPMX19_03554 0.67 -0.2
974,136 + MPMX19_03554 0.67 -1.7
974,136 + MPMX19_03554 0.67 +1.1
974,136 + MPMX19_03554 0.67 -0.3
974,136 + MPMX19_03554 0.67 -0.8
974,137 - MPMX19_03554 0.67 +0.4
974,137 - MPMX19_03554 0.67 -2.2
974,137 - MPMX19_03554 0.67 -0.5
974,221 + MPMX19_03554 0.80 +0.4
974,221 + MPMX19_03554 0.80 +1.0
974,221 + MPMX19_03554 0.80 +0.3
974,221 + MPMX19_03554 0.80 +0.2
974,221 + MPMX19_03554 0.80 +0.7
974,222 - MPMX19_03554 0.80 +0.7
974,222 - MPMX19_03554 0.80 -0.4
974,844 + MPMX19_03555 0.30 +1.6
974,844 + MPMX19_03555 0.30 -0.0
974,844 + MPMX19_03555 0.30 -0.9
974,845 - MPMX19_03555 0.30 +0.7
974,845 - MPMX19_03555 0.30 -0.6
974,845 - MPMX19_03555 0.30 +0.1
974,845 - MPMX19_03555 0.30 -0.7
974,845 - MPMX19_03555 0.30 +0.3
974,845 - MPMX19_03555 0.30 -0.1
974,845 - MPMX19_03555 0.30 +0.6
974,845 - MPMX19_03555 0.30 +0.4
974,845 - MPMX19_03555 0.30 -0.1
974,845 - MPMX19_03555 0.30 -0.1
974,874 + MPMX19_03555 0.32 -0.1
974,874 + MPMX19_03555 0.32 -0.0
974,874 + MPMX19_03555 0.32 -0.9
974,875 - MPMX19_03555 0.33 +0.1
975,003 + MPMX19_03555 0.42 -0.4
975,004 - MPMX19_03555 0.42 +0.1
975,004 - MPMX19_03555 0.42 +0.5
975,087 + MPMX19_03555 0.48 -0.0
975,087 + MPMX19_03555 0.48 +0.6
975,087 + MPMX19_03555 0.48 -0.5
975,087 + MPMX19_03555 0.48 +0.7
975,087 + MPMX19_03555 0.48 -2.1
975,087 + MPMX19_03555 0.48 +0.3
975,087 + MPMX19_03555 0.48 -0.4
975,087 + MPMX19_03555 0.48 +0.5
975,087 + MPMX19_03555 0.48 +1.5
975,087 + MPMX19_03555 0.48 +0.7
975,087 + MPMX19_03555 0.48 -2.2
975,087 + MPMX19_03555 0.48 -0.4
975,087 + MPMX19_03555 0.48 -0.1
975,087 + MPMX19_03555 0.48 +0.1
975,087 + MPMX19_03555 0.48 -0.8
975,087 + MPMX19_03555 0.48 +0.7
975,087 + MPMX19_03555 0.48 -0.4
975,088 - MPMX19_03555 0.48 -1.1
975,088 - MPMX19_03555 0.48 +0.8
975,088 - MPMX19_03555 0.48 -0.9
975,088 - MPMX19_03555 0.48 +0.9
975,088 - MPMX19_03555 0.48 -0.3
975,088 - MPMX19_03555 0.48 -1.6
975,088 - MPMX19_03555 0.48 -0.4
975,088 - MPMX19_03555 0.48 -1.1
975,088 - MPMX19_03555 0.48 -1.4
975,088 - MPMX19_03555 0.48 -0.2
975,088 - MPMX19_03555 0.48 -0.1
975,088 - MPMX19_03555 0.48 -1.0
975,088 - MPMX19_03555 0.48 +0.3
975,088 - MPMX19_03555 0.48 +0.7
975,088 - MPMX19_03555 0.48 -1.3
975,088 - MPMX19_03555 0.48 -1.1
975,088 - MPMX19_03555 0.48 -1.7
975,088 - MPMX19_03555 0.48 -1.2
975,088 - MPMX19_03555 0.48 -2.6
975,088 - MPMX19_03555 0.48 +0.3
975,088 - MPMX19_03555 0.48 -0.9
975,088 - MPMX19_03555 0.48 -0.9
975,088 - MPMX19_03555 0.48 -0.6
975,135 + MPMX19_03555 0.51 -1.1
975,135 + MPMX19_03555 0.51 -0.4
975,135 + MPMX19_03555 0.51 -1.4
975,136 - MPMX19_03555 0.51 -1.3
975,136 - MPMX19_03555 0.51 -0.1
975,136 - MPMX19_03555 0.51 -0.4
975,136 - MPMX19_03555 0.51 +0.1

Or see this region's nucleotide sequence