Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03544

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03543 and MPMX19_03544 are separated by 19 nucleotidesMPMX19_03544 and MPMX19_03545 overlap by 1 nucleotides MPMX19_03543: MPMX19_03543 - putative ABC transporter ATP-binding protein YejF, at 962,599 to 964,200 _03543 MPMX19_03544: MPMX19_03544 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 964,220 to 965,431 _03544 MPMX19_03545: MPMX19_03545 - Ectoine hydrolase, at 965,431 to 966,570 _03545 Position (kb) 964 965 966Strain fitness (log2 ratio) -3 -2 -1 0 1at 963.226 kb on + strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.451 kb on + strand, within MPMX19_03543at 963.452 kb on - strand, within MPMX19_03543at 963.847 kb on + strand, within MPMX19_03543at 963.848 kb on - strand, within MPMX19_03543at 964.030 kb on + strand, within MPMX19_03543at 964.030 kb on + strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.031 kb on - strand, within MPMX19_03543at 964.156 kb on + strandat 964.157 kb on - strandat 964.301 kb on + strandat 964.301 kb on + strandat 964.301 kb on + strandat 964.301 kb on + strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.302 kb on - strandat 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.538 kb on + strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.539 kb on - strand, within MPMX19_03544at 964.580 kb on + strand, within MPMX19_03544at 964.580 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.646 kb on + strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 964.647 kb on - strand, within MPMX19_03544at 965.027 kb on + strand, within MPMX19_03544at 965.211 kb on - strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.267 kb on + strand, within MPMX19_03544at 965.268 kb on - strand, within MPMX19_03544at 965.268 kb on - strand, within MPMX19_03544at 965.268 kb on - strand, within MPMX19_03544at 965.339 kb on + strandat 965.339 kb on + strandat 965.339 kb on + strandat 965.339 kb on + strandat 965.339 kb on + strandat 965.378 kb on + strandat 965.379 kb on - strandat 965.379 kb on - strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.399 kb on + strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.400 kb on - strandat 965.555 kb on - strand, within MPMX19_03545at 965.555 kb on - strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.773 kb on + strand, within MPMX19_03545at 965.774 kb on - strand, within MPMX19_03545at 966.163 kb on + strand, within MPMX19_03545at 966.163 kb on + strand, within MPMX19_03545at 966.164 kb on - strand, within MPMX19_03545at 966.164 kb on - strand, within MPMX19_03545at 966.346 kb on + strand, within MPMX19_03545at 966.364 kb on + strand, within MPMX19_03545at 966.364 kb on + strand, within MPMX19_03545at 966.379 kb on + strand, within MPMX19_03545at 966.380 kb on - strand, within MPMX19_03545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
963,226 + MPMX19_03543 0.39 -1.4
963,227 - MPMX19_03543 0.39 -1.9
963,227 - MPMX19_03543 0.39 +0.9
963,227 - MPMX19_03543 0.39 +0.1
963,227 - MPMX19_03543 0.39 -0.0
963,227 - MPMX19_03543 0.39 -2.4
963,451 + MPMX19_03543 0.53 -0.5
963,452 - MPMX19_03543 0.53 +0.7
963,847 + MPMX19_03543 0.78 +1.2
963,848 - MPMX19_03543 0.78 -1.6
964,030 + MPMX19_03543 0.89 +0.6
964,030 + MPMX19_03543 0.89 -0.9
964,031 - MPMX19_03543 0.89 -1.0
964,031 - MPMX19_03543 0.89 -0.6
964,031 - MPMX19_03543 0.89 -2.1
964,031 - MPMX19_03543 0.89 -1.1
964,156 + -1.9
964,157 - -0.4
964,301 + +0.7
964,301 + -1.3
964,301 + -0.5
964,301 + +1.7
964,302 - +0.3
964,302 - +1.1
964,302 - +0.9
964,302 - -3.0
964,302 - +0.1
964,302 - -0.6
964,302 - -0.6
964,302 - +0.2
964,538 + MPMX19_03544 0.26 -0.8
964,538 + MPMX19_03544 0.26 -1.4
964,538 + MPMX19_03544 0.26 -0.3
964,538 + MPMX19_03544 0.26 -0.3
964,538 + MPMX19_03544 0.26 -0.1
964,539 - MPMX19_03544 0.26 -1.0
964,539 - MPMX19_03544 0.26 -0.7
964,539 - MPMX19_03544 0.26 -0.6
964,539 - MPMX19_03544 0.26 -0.6
964,539 - MPMX19_03544 0.26 -0.9
964,539 - MPMX19_03544 0.26 -2.0
964,539 - MPMX19_03544 0.26 -1.0
964,539 - MPMX19_03544 0.26 -0.0
964,580 + MPMX19_03544 0.30 -0.3
964,580 + MPMX19_03544 0.30 -0.6
964,646 + MPMX19_03544 0.35 -0.4
964,646 + MPMX19_03544 0.35 -0.7
964,646 + MPMX19_03544 0.35 -0.6
964,646 + MPMX19_03544 0.35 -1.3
964,646 + MPMX19_03544 0.35 -1.6
964,646 + MPMX19_03544 0.35 -0.3
964,646 + MPMX19_03544 0.35 +0.6
964,646 + MPMX19_03544 0.35 -1.2
964,646 + MPMX19_03544 0.35 -2.0
964,646 + MPMX19_03544 0.35 +1.1
964,647 - MPMX19_03544 0.35 +0.7
964,647 - MPMX19_03544 0.35 -0.7
964,647 - MPMX19_03544 0.35 +0.7
964,647 - MPMX19_03544 0.35 -1.7
964,647 - MPMX19_03544 0.35 +1.7
964,647 - MPMX19_03544 0.35 +0.2
964,647 - MPMX19_03544 0.35 -0.3
964,647 - MPMX19_03544 0.35 -0.5
964,647 - MPMX19_03544 0.35 -0.9
964,647 - MPMX19_03544 0.35 -0.3
964,647 - MPMX19_03544 0.35 -0.3
964,647 - MPMX19_03544 0.35 +0.1
965,027 + MPMX19_03544 0.67 -0.4
965,211 - MPMX19_03544 0.82 -1.6
965,267 + MPMX19_03544 0.86 -2.4
965,267 + MPMX19_03544 0.86 -0.9
965,267 + MPMX19_03544 0.86 -0.7
965,267 + MPMX19_03544 0.86 -0.3
965,267 + MPMX19_03544 0.86 -1.5
965,268 - MPMX19_03544 0.86 -0.3
965,268 - MPMX19_03544 0.86 +0.4
965,268 - MPMX19_03544 0.86 -0.5
965,339 + +0.4
965,339 + +0.5
965,339 + -0.1
965,339 + +0.6
965,339 + -0.9
965,378 + -1.4
965,379 - -0.7
965,379 - +0.4
965,399 + -0.1
965,399 + -0.3
965,399 + -0.8
965,399 + +0.1
965,399 + -0.1
965,399 + +0.5
965,399 + -0.3
965,399 + +0.6
965,399 + -1.3
965,399 + -0.1
965,399 + -1.3
965,399 + -0.6
965,399 + -0.4
965,399 + +0.7
965,399 + +0.1
965,400 - -2.0
965,400 - -0.9
965,400 - -0.9
965,400 - -1.2
965,400 - -1.7
965,400 - -0.3
965,555 - MPMX19_03545 0.11 +0.1
965,555 - MPMX19_03545 0.11 -1.1
965,773 + MPMX19_03545 0.30 -0.3
965,773 + MPMX19_03545 0.30 -0.0
965,773 + MPMX19_03545 0.30 -0.2
965,773 + MPMX19_03545 0.30 +1.6
965,773 + MPMX19_03545 0.30 -0.4
965,774 - MPMX19_03545 0.30 -0.9
966,163 + MPMX19_03545 0.64 -0.3
966,163 + MPMX19_03545 0.64 -1.2
966,164 - MPMX19_03545 0.64 +0.4
966,164 - MPMX19_03545 0.64 -0.7
966,346 + MPMX19_03545 0.80 +0.1
966,364 + MPMX19_03545 0.82 -0.0
966,364 + MPMX19_03545 0.82 +0.5
966,379 + MPMX19_03545 0.83 -0.1
966,380 - MPMX19_03545 0.83 -0.3

Or see this region's nucleotide sequence