Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03540

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03539 and MPMX19_03540 overlap by 4 nucleotidesMPMX19_03540 and MPMX19_03541 are separated by 4 nucleotidesMPMX19_03541 and MPMX19_03542 overlap by 8 nucleotides MPMX19_03539: MPMX19_03539 - Acetylornithine deacetylase, at 957,886 to 959,259 _03539 MPMX19_03540: MPMX19_03540 - putative deoxycholate-binding periplasmic protein YgiS, at 959,256 to 960,827 _03540 MPMX19_03541: MPMX19_03541 - Glutathione transport system permease protein GsiC, at 960,832 to 961,779 _03541 MPMX19_03542: MPMX19_03542 - Glutathione transport system permease protein GsiD, at 961,772 to 962,602 _03542 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2at 958.282 kb on + strand, within MPMX19_03539at 958.283 kb on - strand, within MPMX19_03539at 958.283 kb on - strand, within MPMX19_03539at 958.372 kb on + strand, within MPMX19_03539at 958.372 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.465 kb on - strand, within MPMX19_03539at 958.792 kb on + strand, within MPMX19_03539at 958.793 kb on - strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.810 kb on + strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 958.811 kb on - strand, within MPMX19_03539at 959.159 kb on - strandat 959.159 kb on - strandat 959.159 kb on - strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.187 kb on + strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.188 kb on - strandat 959.322 kb on - strandat 959.448 kb on + strand, within MPMX19_03540at 959.448 kb on + strand, within MPMX19_03540at 959.448 kb on + strand, within MPMX19_03540at 959.448 kb on + strand, within MPMX19_03540at 959.449 kb on - strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.469 kb on + strand, within MPMX19_03540at 959.470 kb on - strand, within MPMX19_03540at 959.470 kb on - strand, within MPMX19_03540at 959.470 kb on - strand, within MPMX19_03540at 959.772 kb on + strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.773 kb on - strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.913 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.916 kb on + strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.917 kb on - strand, within MPMX19_03540at 959.934 kb on + strand, within MPMX19_03540at 959.935 kb on - strand, within MPMX19_03540at 960.039 kb on + strand, within MPMX19_03540at 960.211 kb on - strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.459 kb on + strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.460 kb on - strand, within MPMX19_03540at 960.492 kb on + strand, within MPMX19_03540at 960.493 kb on - strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.504 kb on + strand, within MPMX19_03540at 960.505 kb on - strand, within MPMX19_03540at 960.505 kb on - strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.546 kb on + strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.547 kb on - strand, within MPMX19_03540at 960.654 kb on + strand, within MPMX19_03540at 960.654 kb on + strand, within MPMX19_03540at 960.655 kb on - strand, within MPMX19_03540at 960.655 kb on - strand, within MPMX19_03540at 960.655 kb on - strand, within MPMX19_03540at 960.738 kb on + strandat 960.738 kb on + strandat 960.738 kb on + strandat 960.738 kb on + strandat 960.738 kb on + strandat 960.739 kb on - strandat 960.739 kb on - strandat 960.739 kb on - strandat 960.739 kb on - strandat 960.750 kb on + strandat 960.750 kb on + strandat 960.751 kb on - strandat 960.874 kb on + strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.175 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.244 kb on - strand, within MPMX19_03541at 961.244 kb on - strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.471 kb on - strand, within MPMX19_03541at 961.580 kb on - strand, within MPMX19_03541at 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.712 kb on - strandat 961.744 kb on + strandat 961.744 kb on + strandat 961.745 kb on - strandat 961.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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958,282 + MPMX19_03539 0.29 +0.1
958,283 - MPMX19_03539 0.29 -0.4
958,283 - MPMX19_03539 0.29 -0.7
958,372 + MPMX19_03539 0.35 -0.1
958,372 + MPMX19_03539 0.35 +0.1
958,432 + MPMX19_03539 0.40 +0.0
958,432 + MPMX19_03539 0.40 -0.5
958,432 + MPMX19_03539 0.40 +0.4
958,433 - MPMX19_03539 0.40 +0.4
958,433 - MPMX19_03539 0.40 -0.7
958,433 - MPMX19_03539 0.40 -2.4
958,433 - MPMX19_03539 0.40 -1.4
958,465 - MPMX19_03539 0.42 -0.5
958,792 + MPMX19_03539 0.66 -0.6
958,793 - MPMX19_03539 0.66 -0.4
958,810 + MPMX19_03539 0.67 +0.3
958,810 + MPMX19_03539 0.67 +0.5
958,810 + MPMX19_03539 0.67 -0.6
958,810 + MPMX19_03539 0.67 -1.4
958,810 + MPMX19_03539 0.67 +0.3
958,810 + MPMX19_03539 0.67 +0.7
958,810 + MPMX19_03539 0.67 -1.6
958,810 + MPMX19_03539 0.67 -1.1
958,810 + MPMX19_03539 0.67 -0.9
958,810 + MPMX19_03539 0.67 -0.4
958,810 + MPMX19_03539 0.67 +0.3
958,810 + MPMX19_03539 0.67 -0.2
958,810 + MPMX19_03539 0.67 -0.2
958,811 - MPMX19_03539 0.67 -0.9
958,811 - MPMX19_03539 0.67 +1.0
958,811 - MPMX19_03539 0.67 -0.1
958,811 - MPMX19_03539 0.67 -0.9
958,811 - MPMX19_03539 0.67 +0.1
958,811 - MPMX19_03539 0.67 +0.1
958,811 - MPMX19_03539 0.67 -0.1
958,811 - MPMX19_03539 0.67 -0.9
958,811 - MPMX19_03539 0.67 -0.5
958,811 - MPMX19_03539 0.67 +1.7
958,811 - MPMX19_03539 0.67 -0.0
958,811 - MPMX19_03539 0.67 +0.3
959,159 - -0.4
959,159 - +0.1
959,159 - -0.3
959,187 + +1.7
959,187 + -0.9
959,187 + -0.1
959,187 + +0.4
959,187 + -1.6
959,187 + -0.5
959,187 + +0.6
959,188 - -0.6
959,188 - +0.1
959,188 - -0.7
959,188 - +0.5
959,188 - -1.3
959,188 - +1.9
959,322 - +1.0
959,448 + MPMX19_03540 0.12 -1.9
959,448 + MPMX19_03540 0.12 +0.4
959,448 + MPMX19_03540 0.12 -0.6
959,448 + MPMX19_03540 0.12 +1.1
959,449 - MPMX19_03540 0.12 +1.0
959,469 + MPMX19_03540 0.14 +0.6
959,469 + MPMX19_03540 0.14 -0.6
959,469 + MPMX19_03540 0.14 -0.6
959,469 + MPMX19_03540 0.14 +0.8
959,469 + MPMX19_03540 0.14 -0.1
959,469 + MPMX19_03540 0.14 -0.0
959,470 - MPMX19_03540 0.14 -1.3
959,470 - MPMX19_03540 0.14 +0.4
959,470 - MPMX19_03540 0.14 -0.6
959,772 + MPMX19_03540 0.33 -2.4
959,773 - MPMX19_03540 0.33 -0.3
959,773 - MPMX19_03540 0.33 -1.0
959,773 - MPMX19_03540 0.33 +0.3
959,773 - MPMX19_03540 0.33 -1.8
959,913 + MPMX19_03540 0.42 -0.7
959,913 + MPMX19_03540 0.42 +0.2
959,913 + MPMX19_03540 0.42 -1.1
959,913 + MPMX19_03540 0.42 -1.1
959,913 + MPMX19_03540 0.42 -1.4
959,916 + MPMX19_03540 0.42 -0.3
959,916 + MPMX19_03540 0.42 +0.3
959,916 + MPMX19_03540 0.42 +1.4
959,916 + MPMX19_03540 0.42 +0.1
959,916 + MPMX19_03540 0.42 -1.1
959,916 + MPMX19_03540 0.42 -0.3
959,916 + MPMX19_03540 0.42 -0.2
959,916 + MPMX19_03540 0.42 -1.5
959,916 + MPMX19_03540 0.42 -0.4
959,916 + MPMX19_03540 0.42 -0.0
959,916 + MPMX19_03540 0.42 -0.6
959,917 - MPMX19_03540 0.42 -0.1
959,917 - MPMX19_03540 0.42 +0.4
959,917 - MPMX19_03540 0.42 +0.5
959,917 - MPMX19_03540 0.42 -0.6
959,917 - MPMX19_03540 0.42 -0.1
959,917 - MPMX19_03540 0.42 +2.1
959,934 + MPMX19_03540 0.43 -0.6
959,935 - MPMX19_03540 0.43 -0.1
960,039 + MPMX19_03540 0.50 +0.3
960,211 - MPMX19_03540 0.61 +0.3
960,459 + MPMX19_03540 0.77 -0.1
960,459 + MPMX19_03540 0.77 -1.3
960,459 + MPMX19_03540 0.77 +0.5
960,459 + MPMX19_03540 0.77 -1.9
960,459 + MPMX19_03540 0.77 -0.5
960,459 + MPMX19_03540 0.77 +1.0
960,459 + MPMX19_03540 0.77 -0.0
960,459 + MPMX19_03540 0.77 +0.3
960,460 - MPMX19_03540 0.77 -0.9
960,460 - MPMX19_03540 0.77 +1.2
960,460 - MPMX19_03540 0.77 +0.6
960,460 - MPMX19_03540 0.77 +0.6
960,460 - MPMX19_03540 0.77 -0.4
960,460 - MPMX19_03540 0.77 -0.9
960,460 - MPMX19_03540 0.77 +0.1
960,460 - MPMX19_03540 0.77 -0.8
960,460 - MPMX19_03540 0.77 -0.6
960,492 + MPMX19_03540 0.79 -1.0
960,493 - MPMX19_03540 0.79 -0.3
960,504 + MPMX19_03540 0.79 -1.1
960,504 + MPMX19_03540 0.79 -1.5
960,504 + MPMX19_03540 0.79 +1.7
960,504 + MPMX19_03540 0.79 -0.5
960,505 - MPMX19_03540 0.79 -1.3
960,505 - MPMX19_03540 0.79 -1.7
960,546 + MPMX19_03540 0.82 +0.2
960,546 + MPMX19_03540 0.82 +0.7
960,546 + MPMX19_03540 0.82 -0.7
960,546 + MPMX19_03540 0.82 +0.3
960,546 + MPMX19_03540 0.82 +0.1
960,546 + MPMX19_03540 0.82 -1.6
960,547 - MPMX19_03540 0.82 -0.1
960,547 - MPMX19_03540 0.82 -2.7
960,547 - MPMX19_03540 0.82 -2.4
960,547 - MPMX19_03540 0.82 -0.9
960,547 - MPMX19_03540 0.82 -1.3
960,547 - MPMX19_03540 0.82 -0.3
960,547 - MPMX19_03540 0.82 +0.7
960,547 - MPMX19_03540 0.82 -0.3
960,547 - MPMX19_03540 0.82 -0.7
960,547 - MPMX19_03540 0.82 -0.6
960,547 - MPMX19_03540 0.82 -1.9
960,547 - MPMX19_03540 0.82 -1.1
960,654 + MPMX19_03540 0.89 +0.8
960,654 + MPMX19_03540 0.89 -1.3
960,655 - MPMX19_03540 0.89 -0.1
960,655 - MPMX19_03540 0.89 +0.6
960,655 - MPMX19_03540 0.89 -2.0
960,738 + +0.7
960,738 + +0.4
960,738 + -0.6
960,738 + -1.9
960,738 + +1.0
960,739 - -0.1
960,739 - -0.1
960,739 - +1.1
960,739 - +0.3
960,750 + -1.1
960,750 + +0.3
960,751 - +0.2
960,874 + -1.2
960,875 - -1.0
960,875 - -0.3
960,875 - +1.4
960,875 - -0.5
960,875 - -0.6
960,875 - -0.4
961,028 - MPMX19_03541 0.21 +0.1
961,028 - MPMX19_03541 0.21 +0.2
961,028 - MPMX19_03541 0.21 +0.8
961,028 - MPMX19_03541 0.21 +1.0
961,028 - MPMX19_03541 0.21 +0.7
961,175 + MPMX19_03541 0.36 -1.7
961,243 + MPMX19_03541 0.43 +1.0
961,243 + MPMX19_03541 0.43 +0.9
961,243 + MPMX19_03541 0.43 -0.5
961,243 + MPMX19_03541 0.43 -0.7
961,243 + MPMX19_03541 0.43 +1.7
961,244 - MPMX19_03541 0.43 +0.5
961,244 - MPMX19_03541 0.43 +0.6
961,333 + MPMX19_03541 0.53 -0.5
961,333 + MPMX19_03541 0.53 -2.2
961,333 + MPMX19_03541 0.53 -2.1
961,334 - MPMX19_03541 0.53 -1.4
961,334 - MPMX19_03541 0.53 -0.1
961,334 - MPMX19_03541 0.53 -0.6
961,468 + MPMX19_03541 0.67 +1.2
961,468 + MPMX19_03541 0.67 -0.5
961,468 + MPMX19_03541 0.67 +0.1
961,468 + MPMX19_03541 0.67 -0.6
961,468 + MPMX19_03541 0.67 -0.3
961,468 + MPMX19_03541 0.67 +0.7
961,468 + MPMX19_03541 0.67 +0.3
961,468 + MPMX19_03541 0.67 -0.9
961,468 + MPMX19_03541 0.67 -0.3
961,468 + MPMX19_03541 0.67 -0.7
961,469 - MPMX19_03541 0.67 -0.6
961,469 - MPMX19_03541 0.67 -1.0
961,469 - MPMX19_03541 0.67 -1.6
961,469 - MPMX19_03541 0.67 -0.6
961,469 - MPMX19_03541 0.67 -0.5
961,469 - MPMX19_03541 0.67 -1.3
961,469 - MPMX19_03541 0.67 -1.8
961,469 - MPMX19_03541 0.67 -0.2
961,469 - MPMX19_03541 0.67 -0.3
961,469 - MPMX19_03541 0.67 +0.3
961,470 + MPMX19_03541 0.67 -1.4
961,470 + MPMX19_03541 0.67 -0.7
961,470 + MPMX19_03541 0.67 -0.5
961,471 - MPMX19_03541 0.67 +0.8
961,580 - MPMX19_03541 0.79 -0.3
961,711 + +0.1
961,711 + -2.5
961,711 + -1.3
961,711 + +0.4
961,712 - -0.1
961,744 + -0.9
961,744 + -1.1
961,745 - -0.1
961,745 - -1.7

Or see this region's nucleotide sequence