Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03467

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03465 and MPMX19_03466 are separated by 26 nucleotidesMPMX19_03466 and MPMX19_03467 are separated by 74 nucleotidesMPMX19_03467 and MPMX19_03468 are separated by 83 nucleotides MPMX19_03465: MPMX19_03465 - Acetyl-CoA acetyltransferase, at 875,211 to 876,386 _03465 MPMX19_03466: MPMX19_03466 - hypothetical protein, at 876,413 to 876,685 _03466 MPMX19_03467: MPMX19_03467 - Methyl-accepting chemotaxis protein, at 876,760 to 878,451 _03467 MPMX19_03468: MPMX19_03468 - hypothetical protein, at 878,535 to 879,512 _03468 Position (kb) 876 877 878 879Strain fitness (log2 ratio) -2 -1 0 1at 876.448 kb on + strand, within MPMX19_03466at 876.449 kb on - strand, within MPMX19_03466at 876.449 kb on - strand, within MPMX19_03466at 876.449 kb on - strand, within MPMX19_03466at 876.449 kb on - strand, within MPMX19_03466at 876.463 kb on + strand, within MPMX19_03466at 876.464 kb on - strand, within MPMX19_03466at 876.464 kb on - strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.466 kb on + strand, within MPMX19_03466at 876.467 kb on - strand, within MPMX19_03466at 876.467 kb on - strand, within MPMX19_03466at 876.467 kb on - strand, within MPMX19_03466at 876.467 kb on - strand, within MPMX19_03466at 876.467 kb on - strand, within MPMX19_03466at 876.470 kb on - strand, within MPMX19_03466at 876.470 kb on - strand, within MPMX19_03466at 876.470 kb on - strand, within MPMX19_03466at 876.470 kb on - strand, within MPMX19_03466at 876.683 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.755 kb on + strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 876.756 kb on - strandat 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.033 kb on + strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.034 kb on - strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.132 kb on + strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.133 kb on - strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.189 kb on + strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.190 kb on - strand, within MPMX19_03467at 877.228 kb on + strand, within MPMX19_03467at 877.228 kb on + strand, within MPMX19_03467at 877.228 kb on + strand, within MPMX19_03467at 877.228 kb on + strand, within MPMX19_03467at 877.229 kb on - strand, within MPMX19_03467at 877.229 kb on - strand, within MPMX19_03467at 877.229 kb on - strand, within MPMX19_03467at 877.229 kb on - strand, within MPMX19_03467at 877.229 kb on - strand, within MPMX19_03467at 877.229 kb on - strand, within MPMX19_03467at 877.244 kb on - strand, within MPMX19_03467at 877.244 kb on - strand, within MPMX19_03467at 877.244 kb on - strand, within MPMX19_03467at 877.244 kb on - strand, within MPMX19_03467at 877.244 kb on - strand, within MPMX19_03467at 877.291 kb on + strand, within MPMX19_03467at 877.291 kb on + strand, within MPMX19_03467at 877.292 kb on - strand, within MPMX19_03467at 877.292 kb on - strand, within MPMX19_03467at 878.463 kb on + strandat 878.548 kb on + strandat 878.549 kb on - strandat 878.549 kb on - strandat 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.875 kb on + strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.876 kb on - strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.914 kb on + strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.915 kb on - strand, within MPMX19_03468at 878.945 kb on - strand, within MPMX19_03468at 878.945 kb on - strand, within MPMX19_03468at 878.945 kb on - strand, within MPMX19_03468at 878.992 kb on + strand, within MPMX19_03468at 878.993 kb on - strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.094 kb on + strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.095 kb on - strand, within MPMX19_03468at 879.124 kb on + strand, within MPMX19_03468at 879.124 kb on + strand, within MPMX19_03468at 879.125 kb on - strand, within MPMX19_03468at 879.148 kb on + strand, within MPMX19_03468at 879.148 kb on + strand, within MPMX19_03468at 879.148 kb on + strand, within MPMX19_03468at 879.149 kb on - strand, within MPMX19_03468at 879.149 kb on - strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.244 kb on + strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468at 879.245 kb on - strand, within MPMX19_03468

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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876,448 + MPMX19_03466 0.13 -0.6
876,449 - MPMX19_03466 0.13 +0.1
876,449 - MPMX19_03466 0.13 -0.3
876,449 - MPMX19_03466 0.13 -0.5
876,449 - MPMX19_03466 0.13 -0.4
876,463 + MPMX19_03466 0.18 -0.9
876,464 - MPMX19_03466 0.19 -0.1
876,464 - MPMX19_03466 0.19 -1.2
876,466 + MPMX19_03466 0.19 -1.5
876,466 + MPMX19_03466 0.19 -0.4
876,466 + MPMX19_03466 0.19 -0.7
876,466 + MPMX19_03466 0.19 -0.9
876,466 + MPMX19_03466 0.19 -1.6
876,466 + MPMX19_03466 0.19 -0.3
876,466 + MPMX19_03466 0.19 -1.4
876,467 - MPMX19_03466 0.20 -0.3
876,467 - MPMX19_03466 0.20 -1.4
876,467 - MPMX19_03466 0.20 -0.9
876,467 - MPMX19_03466 0.20 -1.1
876,467 - MPMX19_03466 0.20 -0.5
876,470 - MPMX19_03466 0.21 -0.0
876,470 - MPMX19_03466 0.21 +0.3
876,470 - MPMX19_03466 0.21 -0.1
876,470 - MPMX19_03466 0.21 -0.7
876,683 + +1.1
876,755 + +0.4
876,755 + -0.9
876,755 + +0.0
876,755 + +0.0
876,755 + +0.7
876,755 + +0.1
876,755 + -0.3
876,755 + -0.7
876,755 + -1.4
876,755 + -1.1
876,756 - -0.6
876,756 - -0.5
876,756 - +0.6
876,756 - -1.2
876,756 - +0.7
876,756 - -1.1
876,756 - -1.0
876,756 - +0.6
876,756 - -0.5
876,756 - -0.6
876,756 - -0.7
876,756 - -0.6
876,756 - +0.0
877,033 + MPMX19_03467 0.16 -1.1
877,033 + MPMX19_03467 0.16 -0.9
877,033 + MPMX19_03467 0.16 -0.0
877,033 + MPMX19_03467 0.16 +0.7
877,033 + MPMX19_03467 0.16 -0.8
877,033 + MPMX19_03467 0.16 -2.0
877,033 + MPMX19_03467 0.16 -0.6
877,033 + MPMX19_03467 0.16 -0.3
877,033 + MPMX19_03467 0.16 -1.9
877,033 + MPMX19_03467 0.16 -0.1
877,033 + MPMX19_03467 0.16 -0.0
877,033 + MPMX19_03467 0.16 -0.1
877,033 + MPMX19_03467 0.16 -0.2
877,034 - MPMX19_03467 0.16 +1.0
877,034 - MPMX19_03467 0.16 -0.1
877,034 - MPMX19_03467 0.16 -1.3
877,034 - MPMX19_03467 0.16 -1.6
877,034 - MPMX19_03467 0.16 -0.8
877,034 - MPMX19_03467 0.16 -2.0
877,034 - MPMX19_03467 0.16 -1.5
877,034 - MPMX19_03467 0.16 -1.6
877,132 + MPMX19_03467 0.22 +0.9
877,132 + MPMX19_03467 0.22 +0.5
877,132 + MPMX19_03467 0.22 +0.4
877,132 + MPMX19_03467 0.22 -1.2
877,132 + MPMX19_03467 0.22 +0.0
877,132 + MPMX19_03467 0.22 -0.4
877,132 + MPMX19_03467 0.22 -1.3
877,132 + MPMX19_03467 0.22 -1.4
877,132 + MPMX19_03467 0.22 -1.3
877,133 - MPMX19_03467 0.22 -0.3
877,133 - MPMX19_03467 0.22 -0.3
877,133 - MPMX19_03467 0.22 -0.3
877,133 - MPMX19_03467 0.22 -0.7
877,133 - MPMX19_03467 0.22 +0.0
877,133 - MPMX19_03467 0.22 -2.0
877,133 - MPMX19_03467 0.22 -0.1
877,133 - MPMX19_03467 0.22 -0.1
877,189 + MPMX19_03467 0.25 -2.1
877,189 + MPMX19_03467 0.25 +0.6
877,189 + MPMX19_03467 0.25 +0.3
877,189 + MPMX19_03467 0.25 +0.2
877,189 + MPMX19_03467 0.25 -1.0
877,189 + MPMX19_03467 0.25 -1.0
877,189 + MPMX19_03467 0.25 -0.7
877,190 - MPMX19_03467 0.25 -0.7
877,190 - MPMX19_03467 0.25 -1.1
877,190 - MPMX19_03467 0.25 -1.9
877,190 - MPMX19_03467 0.25 -2.1
877,190 - MPMX19_03467 0.25 -0.6
877,190 - MPMX19_03467 0.25 +0.5
877,190 - MPMX19_03467 0.25 -0.4
877,228 + MPMX19_03467 0.28 +0.1
877,228 + MPMX19_03467 0.28 -0.8
877,228 + MPMX19_03467 0.28 +0.7
877,228 + MPMX19_03467 0.28 +0.4
877,229 - MPMX19_03467 0.28 -0.2
877,229 - MPMX19_03467 0.28 -0.4
877,229 - MPMX19_03467 0.28 -0.4
877,229 - MPMX19_03467 0.28 +0.3
877,229 - MPMX19_03467 0.28 -0.7
877,229 - MPMX19_03467 0.28 -0.9
877,244 - MPMX19_03467 0.29 -1.1
877,244 - MPMX19_03467 0.29 -1.4
877,244 - MPMX19_03467 0.29 +0.5
877,244 - MPMX19_03467 0.29 -0.0
877,244 - MPMX19_03467 0.29 -0.9
877,291 + MPMX19_03467 0.31 -1.9
877,291 + MPMX19_03467 0.31 -0.6
877,292 - MPMX19_03467 0.31 -0.3
877,292 - MPMX19_03467 0.31 +0.4
878,463 + -0.3
878,548 + +0.3
878,549 - -0.2
878,549 - -1.0
878,875 + MPMX19_03468 0.35 +0.0
878,875 + MPMX19_03468 0.35 +0.1
878,875 + MPMX19_03468 0.35 +0.6
878,875 + MPMX19_03468 0.35 +0.2
878,875 + MPMX19_03468 0.35 +0.1
878,876 - MPMX19_03468 0.35 -1.0
878,876 - MPMX19_03468 0.35 -1.1
878,876 - MPMX19_03468 0.35 -0.9
878,876 - MPMX19_03468 0.35 -0.4
878,876 - MPMX19_03468 0.35 -0.9
878,876 - MPMX19_03468 0.35 -1.4
878,876 - MPMX19_03468 0.35 +0.2
878,876 - MPMX19_03468 0.35 +0.1
878,876 - MPMX19_03468 0.35 -1.1
878,876 - MPMX19_03468 0.35 -1.9
878,876 - MPMX19_03468 0.35 -1.1
878,914 + MPMX19_03468 0.39 -0.5
878,914 + MPMX19_03468 0.39 +0.5
878,914 + MPMX19_03468 0.39 +0.3
878,914 + MPMX19_03468 0.39 -1.1
878,914 + MPMX19_03468 0.39 -1.4
878,914 + MPMX19_03468 0.39 -0.4
878,914 + MPMX19_03468 0.39 +0.3
878,915 - MPMX19_03468 0.39 -0.4
878,915 - MPMX19_03468 0.39 +0.5
878,915 - MPMX19_03468 0.39 +0.1
878,915 - MPMX19_03468 0.39 -0.8
878,915 - MPMX19_03468 0.39 -0.0
878,915 - MPMX19_03468 0.39 -0.9
878,915 - MPMX19_03468 0.39 +0.1
878,915 - MPMX19_03468 0.39 +0.6
878,915 - MPMX19_03468 0.39 +0.1
878,945 - MPMX19_03468 0.42 +1.7
878,945 - MPMX19_03468 0.42 -0.3
878,945 - MPMX19_03468 0.42 -0.4
878,992 + MPMX19_03468 0.47 -0.2
878,993 - MPMX19_03468 0.47 -0.9
879,094 + MPMX19_03468 0.57 +0.7
879,094 + MPMX19_03468 0.57 -1.9
879,094 + MPMX19_03468 0.57 -0.1
879,094 + MPMX19_03468 0.57 -0.4
879,094 + MPMX19_03468 0.57 -1.6
879,094 + MPMX19_03468 0.57 -2.0
879,095 - MPMX19_03468 0.57 +1.5
879,095 - MPMX19_03468 0.57 -0.3
879,095 - MPMX19_03468 0.57 -0.9
879,095 - MPMX19_03468 0.57 -0.2
879,095 - MPMX19_03468 0.57 -1.1
879,095 - MPMX19_03468 0.57 -1.2
879,095 - MPMX19_03468 0.57 -1.4
879,095 - MPMX19_03468 0.57 +0.7
879,095 - MPMX19_03468 0.57 +0.7
879,095 - MPMX19_03468 0.57 -1.4
879,095 - MPMX19_03468 0.57 +0.3
879,095 - MPMX19_03468 0.57 -0.2
879,095 - MPMX19_03468 0.57 +1.2
879,124 + MPMX19_03468 0.60 -0.3
879,124 + MPMX19_03468 0.60 -0.4
879,125 - MPMX19_03468 0.60 -0.4
879,148 + MPMX19_03468 0.63 -0.0
879,148 + MPMX19_03468 0.63 -0.6
879,148 + MPMX19_03468 0.63 +0.2
879,149 - MPMX19_03468 0.63 +0.5
879,149 - MPMX19_03468 0.63 -0.3
879,244 + MPMX19_03468 0.72 -2.6
879,244 + MPMX19_03468 0.72 -1.6
879,244 + MPMX19_03468 0.72 -0.5
879,244 + MPMX19_03468 0.72 -1.2
879,244 + MPMX19_03468 0.72 -0.6
879,245 - MPMX19_03468 0.73 -1.1
879,245 - MPMX19_03468 0.73 +0.7
879,245 - MPMX19_03468 0.73 +0.0
879,245 - MPMX19_03468 0.73 -0.4
879,245 - MPMX19_03468 0.73 -0.2
879,245 - MPMX19_03468 0.73 -1.1

Or see this region's nucleotide sequence