Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03446

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03445 and MPMX19_03446 are separated by 1 nucleotidesMPMX19_03446 and MPMX19_03447 overlap by 4 nucleotides MPMX19_03445: MPMX19_03445 - hypothetical protein, at 841,471 to 842,538 _03445 MPMX19_03446: MPMX19_03446 - hypothetical protein, at 842,540 to 843,352 _03446 MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590 _03447 Position (kb) 842 843 844Strain fitness (log2 ratio) -2 -1 0 1 2at 841.829 kb on - strand, within MPMX19_03445at 842.000 kb on - strand, within MPMX19_03445at 842.000 kb on - strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.030 kb on - strand, within MPMX19_03445at 842.030 kb on - strand, within MPMX19_03445at 842.030 kb on - strand, within MPMX19_03445at 842.031 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.375 kb on + strand, within MPMX19_03445at 842.375 kb on + strand, within MPMX19_03445at 842.376 kb on - strand, within MPMX19_03445at 842.383 kb on + strand, within MPMX19_03445at 842.384 kb on - strand, within MPMX19_03445at 842.384 kb on - strand, within MPMX19_03445at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.746 kb on + strand, within MPMX19_03446at 842.747 kb on - strand, within MPMX19_03446at 842.747 kb on - strand, within MPMX19_03446at 842.981 kb on + strand, within MPMX19_03446at 842.981 kb on + strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.376 kb on + strandat 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.925 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.980 kb on - strand, within MPMX19_03447at 843.980 kb on - strand, within MPMX19_03447at 844.037 kb on - strand, within MPMX19_03447at 844.037 kb on - strand, within MPMX19_03447at 844.037 kb on - strand, within MPMX19_03447at 844.042 kb on + strand, within MPMX19_03447at 844.042 kb on + strand, within MPMX19_03447at 844.042 kb on + strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.045 kb on + strand, within MPMX19_03447at 844.045 kb on + strand, within MPMX19_03447at 844.045 kb on + strand, within MPMX19_03447at 844.046 kb on - strand, within MPMX19_03447at 844.046 kb on - strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.094 kb on - strand, within MPMX19_03447at 844.094 kb on - strand, within MPMX19_03447at 844.094 kb on - strand, within MPMX19_03447at 844.229 kb on + strand, within MPMX19_03447at 844.229 kb on + strand, within MPMX19_03447at 844.229 kb on + strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.316 kb on - strand, within MPMX19_03447at 844.316 kb on - strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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841,829 - MPMX19_03445 0.34 +0.9
842,000 - MPMX19_03445 0.50 +0.3
842,000 - MPMX19_03445 0.50 -0.1
842,029 + MPMX19_03445 0.52 +0.8
842,029 + MPMX19_03445 0.52 +0.0
842,029 + MPMX19_03445 0.52 +0.5
842,029 + MPMX19_03445 0.52 -2.7
842,029 + MPMX19_03445 0.52 +1.0
842,030 - MPMX19_03445 0.52 -0.6
842,030 - MPMX19_03445 0.52 +0.1
842,030 - MPMX19_03445 0.52 -1.4
842,031 + MPMX19_03445 0.52 -1.7
842,206 + MPMX19_03445 0.69 +0.0
842,206 + MPMX19_03445 0.69 -0.0
842,206 + MPMX19_03445 0.69 +0.2
842,206 + MPMX19_03445 0.69 -1.4
842,206 + MPMX19_03445 0.69 +0.5
842,206 + MPMX19_03445 0.69 -1.8
842,207 - MPMX19_03445 0.69 -1.9
842,207 - MPMX19_03445 0.69 +0.9
842,207 - MPMX19_03445 0.69 -1.1
842,207 - MPMX19_03445 0.69 +1.0
842,207 - MPMX19_03445 0.69 -1.1
842,207 - MPMX19_03445 0.69 +0.4
842,207 - MPMX19_03445 0.69 -0.3
842,207 - MPMX19_03445 0.69 +0.5
842,207 - MPMX19_03445 0.69 -1.1
842,207 - MPMX19_03445 0.69 +0.7
842,207 - MPMX19_03445 0.69 -0.1
842,207 - MPMX19_03445 0.69 +0.8
842,207 - MPMX19_03445 0.69 -0.4
842,207 - MPMX19_03445 0.69 -0.3
842,375 + MPMX19_03445 0.85 -0.9
842,375 + MPMX19_03445 0.85 +1.1
842,376 - MPMX19_03445 0.85 -0.4
842,383 + MPMX19_03445 0.85 -1.9
842,384 - MPMX19_03445 0.85 +0.2
842,384 - MPMX19_03445 0.85 -0.6
842,711 + MPMX19_03446 0.21 +1.7
842,711 + MPMX19_03446 0.21 -0.1
842,711 + MPMX19_03446 0.21 -0.9
842,711 + MPMX19_03446 0.21 +0.1
842,711 + MPMX19_03446 0.21 +0.3
842,711 + MPMX19_03446 0.21 -0.0
842,712 - MPMX19_03446 0.21 -0.1
842,712 - MPMX19_03446 0.21 -0.2
842,712 - MPMX19_03446 0.21 +0.4
842,712 - MPMX19_03446 0.21 -0.9
842,712 - MPMX19_03446 0.21 -0.4
842,712 - MPMX19_03446 0.21 -0.3
842,712 - MPMX19_03446 0.21 -0.6
842,746 + MPMX19_03446 0.25 -1.7
842,747 - MPMX19_03446 0.25 +0.1
842,747 - MPMX19_03446 0.25 +0.4
842,981 + MPMX19_03446 0.54 +0.1
842,981 + MPMX19_03446 0.54 +0.6
842,982 - MPMX19_03446 0.54 -0.8
842,982 - MPMX19_03446 0.54 -0.6
842,982 - MPMX19_03446 0.54 -0.3
842,982 - MPMX19_03446 0.54 -1.2
843,114 - MPMX19_03446 0.71 +1.7
843,114 - MPMX19_03446 0.71 +0.1
843,114 - MPMX19_03446 0.71 +0.9
843,272 + +0.7
843,272 + -1.4
843,272 + -0.2
843,272 + -0.6
843,272 + -0.2
843,273 - -1.7
843,273 - -0.1
843,273 - -0.3
843,273 - +0.5
843,376 + -0.3
843,478 + MPMX19_03447 0.10 +0.2
843,478 + MPMX19_03447 0.10 -0.1
843,478 + MPMX19_03447 0.10 +0.3
843,478 + MPMX19_03447 0.10 -0.1
843,478 + MPMX19_03447 0.10 -1.2
843,478 + MPMX19_03447 0.10 +0.2
843,479 - MPMX19_03447 0.10 -0.7
843,479 - MPMX19_03447 0.10 -0.9
843,479 - MPMX19_03447 0.10 +0.6
843,479 - MPMX19_03447 0.10 +1.1
843,479 - MPMX19_03447 0.10 -0.1
843,673 + MPMX19_03447 0.26 -1.1
843,673 + MPMX19_03447 0.26 -0.6
843,673 + MPMX19_03447 0.26 +0.9
843,673 + MPMX19_03447 0.26 -0.3
843,673 + MPMX19_03447 0.26 +0.3
843,673 + MPMX19_03447 0.26 +0.9
843,673 + MPMX19_03447 0.26 +0.6
843,673 + MPMX19_03447 0.26 -2.2
843,673 + MPMX19_03447 0.26 -0.1
843,673 + MPMX19_03447 0.26 -0.5
843,674 - MPMX19_03447 0.26 -0.9
843,674 - MPMX19_03447 0.26 +1.0
843,674 - MPMX19_03447 0.26 -1.4
843,674 - MPMX19_03447 0.26 -1.3
843,674 - MPMX19_03447 0.26 -1.2
843,674 - MPMX19_03447 0.26 -0.6
843,674 - MPMX19_03447 0.26 -2.1
843,674 - MPMX19_03447 0.26 +0.2
843,674 - MPMX19_03447 0.26 +0.2
843,674 - MPMX19_03447 0.26 -0.1
843,674 - MPMX19_03447 0.26 +0.4
843,823 + MPMX19_03447 0.38 +1.4
843,823 + MPMX19_03447 0.38 +0.1
843,823 + MPMX19_03447 0.38 -0.7
843,823 + MPMX19_03447 0.38 -1.4
843,823 + MPMX19_03447 0.38 -0.6
843,823 + MPMX19_03447 0.38 -0.7
843,824 - MPMX19_03447 0.38 -0.4
843,824 - MPMX19_03447 0.38 +0.1
843,824 - MPMX19_03447 0.38 -1.4
843,824 - MPMX19_03447 0.38 -0.3
843,824 - MPMX19_03447 0.38 +0.1
843,925 + MPMX19_03447 0.46 -0.6
843,943 + MPMX19_03447 0.48 +0.3
843,943 + MPMX19_03447 0.48 +1.6
843,943 + MPMX19_03447 0.48 -0.6
843,943 + MPMX19_03447 0.48 -0.6
843,943 + MPMX19_03447 0.48 -0.6
843,943 + MPMX19_03447 0.48 +1.4
843,943 + MPMX19_03447 0.48 +0.6
843,943 + MPMX19_03447 0.48 -0.6
843,943 + MPMX19_03447 0.48 +0.1
843,943 + MPMX19_03447 0.48 -1.5
843,943 + MPMX19_03447 0.48 -1.2
843,944 - MPMX19_03447 0.48 +0.7
843,944 - MPMX19_03447 0.48 -0.9
843,944 - MPMX19_03447 0.48 +0.3
843,944 - MPMX19_03447 0.48 +0.4
843,944 - MPMX19_03447 0.48 +0.8
843,944 - MPMX19_03447 0.48 -0.1
843,944 - MPMX19_03447 0.48 -2.1
843,944 - MPMX19_03447 0.48 -1.9
843,944 - MPMX19_03447 0.48 +0.5
843,944 - MPMX19_03447 0.48 -0.0
843,944 - MPMX19_03447 0.48 +1.1
843,979 + MPMX19_03447 0.51 -0.6
843,979 + MPMX19_03447 0.51 -0.4
843,979 + MPMX19_03447 0.51 -1.6
843,979 + MPMX19_03447 0.51 -0.1
843,979 + MPMX19_03447 0.51 -0.7
843,980 - MPMX19_03447 0.51 -0.7
843,980 - MPMX19_03447 0.51 +0.5
844,037 - MPMX19_03447 0.55 -0.1
844,037 - MPMX19_03447 0.55 -1.7
844,037 - MPMX19_03447 0.55 +1.1
844,042 + MPMX19_03447 0.56 -0.4
844,042 + MPMX19_03447 0.56 +0.9
844,042 + MPMX19_03447 0.56 -0.2
844,043 - MPMX19_03447 0.56 -0.1
844,043 - MPMX19_03447 0.56 -0.9
844,043 - MPMX19_03447 0.56 -1.3
844,043 - MPMX19_03447 0.56 +0.9
844,043 - MPMX19_03447 0.56 -0.8
844,043 - MPMX19_03447 0.56 -0.6
844,043 - MPMX19_03447 0.56 -0.3
844,043 - MPMX19_03447 0.56 -0.2
844,043 - MPMX19_03447 0.56 -0.1
844,043 - MPMX19_03447 0.56 -1.4
844,045 + MPMX19_03447 0.56 -0.2
844,045 + MPMX19_03447 0.56 +0.1
844,045 + MPMX19_03447 0.56 +0.7
844,046 - MPMX19_03447 0.56 -1.9
844,046 - MPMX19_03447 0.56 -0.0
844,093 + MPMX19_03447 0.60 -1.9
844,093 + MPMX19_03447 0.60 -1.0
844,093 + MPMX19_03447 0.60 +0.7
844,093 + MPMX19_03447 0.60 +0.4
844,093 + MPMX19_03447 0.60 -1.6
844,093 + MPMX19_03447 0.60 +1.3
844,094 - MPMX19_03447 0.60 -0.1
844,094 - MPMX19_03447 0.60 -1.4
844,094 - MPMX19_03447 0.60 -1.3
844,229 + MPMX19_03447 0.71 -0.3
844,229 + MPMX19_03447 0.71 +1.1
844,229 + MPMX19_03447 0.71 +0.1
844,230 - MPMX19_03447 0.71 -1.3
844,230 - MPMX19_03447 0.71 -1.3
844,230 - MPMX19_03447 0.71 +1.1
844,230 - MPMX19_03447 0.71 +0.7
844,230 - MPMX19_03447 0.71 -0.9
844,316 - MPMX19_03447 0.78 +0.1
844,316 - MPMX19_03447 0.78 -0.6
844,345 + MPMX19_03447 0.80 -1.4
844,345 + MPMX19_03447 0.80 +0.9
844,345 + MPMX19_03447 0.80 +0.4
844,345 + MPMX19_03447 0.80 +0.5
844,345 + MPMX19_03447 0.80 +0.5
844,345 + MPMX19_03447 0.80 -0.9
844,345 + MPMX19_03447 0.80 +0.1
844,345 + MPMX19_03447 0.80 -1.7
844,346 - MPMX19_03447 0.80 +0.8
844,346 - MPMX19_03447 0.80 +0.7
844,346 - MPMX19_03447 0.80 -0.0
844,346 - MPMX19_03447 0.80 -0.3
844,346 - MPMX19_03447 0.80 +2.1
844,346 - MPMX19_03447 0.80 +0.7
844,346 - MPMX19_03447 0.80 -0.3
844,346 - MPMX19_03447 0.80 -2.0

Or see this region's nucleotide sequence