Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03437 and MPMX19_03438 are separated by 7 nucleotides MPMX19_03438 and MPMX19_03439 overlap by 4 nucleotides MPMX19_03439 and MPMX19_03440 are separated by 25 nucleotides
MPMX19_03437: MPMX19_03437 - hypothetical protein, at 832,560 to 833,678
_03437
MPMX19_03438: MPMX19_03438 - hypothetical protein, at 833,686 to 834,279
_03438
MPMX19_03439: MPMX19_03439 - hypothetical protein, at 834,276 to 834,860
_03439
MPMX19_03440: MPMX19_03440 - hypothetical protein, at 834,886 to 835,839
_03440
Position (kb) 834
835 Strain fitness (log2 ratio) -2
-1
0
1
2 at 833.494 kb on - strand, within MPMX19_03437 at 833.521 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.607 kb on + strand at 833.607 kb on + strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.704 kb on + strand at 833.705 kb on - strand at 833.741 kb on - strand at 833.741 kb on - strand at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.846 kb on - strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.220 kb on + strand at 834.220 kb on + strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.294 kb on - strand at 834.294 kb on - strand at 834.411 kb on + strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.825 kb on + strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.826 kb on - strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.891 kb on + strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.892 kb on - strand at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.991 kb on + strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 834.992 kb on - strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.048 kb on + strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.049 kb on - strand, within MPMX19_03440 at 835.165 kb on + strand, within MPMX19_03440 at 835.165 kb on + strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.166 kb on - strand, within MPMX19_03440 at 835.260 kb on + strand, within MPMX19_03440 at 835.261 kb on - strand, within MPMX19_03440 at 835.261 kb on - strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.288 kb on + strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.289 kb on - strand, within MPMX19_03440 at 835.342 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.384 kb on + strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.385 kb on - strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.396 kb on + strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.397 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.487 kb on - strand, within MPMX19_03440 at 835.615 kb on + strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.616 kb on - strand, within MPMX19_03440 at 835.738 kb on + strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.739 kb on - strand, within MPMX19_03440 at 835.804 kb on + strand at 835.804 kb on + strand at 835.804 kb on + strand at 835.805 kb on - strand at 835.805 kb on - strand at 835.805 kb on - strand at 835.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 833,494 - MPMX19_03437 0.83 -1.0 833,521 - MPMX19_03437 0.86 +1.2 833,557 - MPMX19_03437 0.89 -0.1 833,557 - MPMX19_03437 0.89 +0.2 833,557 - MPMX19_03437 0.89 -0.1 833,607 + +1.5 833,607 + -1.0 833,608 - -0.6 833,608 - -0.9 833,608 - +0.0 833,608 - -0.4 833,704 + -0.3 833,705 - -0.5 833,741 - -1.6 833,741 - +0.5 833,836 + MPMX19_03438 0.25 +0.2 833,836 + MPMX19_03438 0.25 -1.6 833,836 + MPMX19_03438 0.25 -1.4 833,836 + MPMX19_03438 0.25 +0.0 833,837 - MPMX19_03438 0.25 +0.3 833,837 - MPMX19_03438 0.25 +0.1 833,837 - MPMX19_03438 0.25 -1.4 833,837 - MPMX19_03438 0.25 +0.3 833,846 - MPMX19_03438 0.27 -1.4 833,872 + MPMX19_03438 0.31 +0.5 833,872 + MPMX19_03438 0.31 +1.2 833,872 + MPMX19_03438 0.31 -0.1 833,872 + MPMX19_03438 0.31 +0.4 833,873 - MPMX19_03438 0.31 +2.5 833,873 - MPMX19_03438 0.31 -0.8 833,873 - MPMX19_03438 0.31 -2.2 833,873 - MPMX19_03438 0.31 +0.1 833,873 - MPMX19_03438 0.31 -0.4 833,873 - MPMX19_03438 0.31 -0.3 833,873 - MPMX19_03438 0.31 -1.7 834,013 + MPMX19_03438 0.55 -1.1 834,013 + MPMX19_03438 0.55 -0.1 834,013 + MPMX19_03438 0.55 -2.1 834,013 + MPMX19_03438 0.55 -0.4 834,013 + MPMX19_03438 0.55 +0.0 834,014 - MPMX19_03438 0.55 +0.2 834,014 - MPMX19_03438 0.55 -0.6 834,014 - MPMX19_03438 0.55 +0.7 834,014 - MPMX19_03438 0.55 -0.1 834,014 - MPMX19_03438 0.55 -0.4 834,014 - MPMX19_03438 0.55 -1.4 834,014 - MPMX19_03438 0.55 -0.6 834,130 + MPMX19_03438 0.75 -2.3 834,130 + MPMX19_03438 0.75 +1.2 834,130 + MPMX19_03438 0.75 -0.9 834,131 - MPMX19_03438 0.75 +0.1 834,131 - MPMX19_03438 0.75 -0.8 834,211 + MPMX19_03438 0.88 -0.9 834,211 + MPMX19_03438 0.88 +0.1 834,211 + MPMX19_03438 0.88 +1.1 834,211 + MPMX19_03438 0.88 -0.6 834,211 + MPMX19_03438 0.88 +0.7 834,211 + MPMX19_03438 0.88 -0.6 834,211 + MPMX19_03438 0.88 -0.3 834,211 + MPMX19_03438 0.88 -0.3 834,211 + MPMX19_03438 0.88 +1.1 834,211 + MPMX19_03438 0.88 -0.4 834,212 - MPMX19_03438 0.89 -1.1 834,212 - MPMX19_03438 0.89 -0.0 834,212 - MPMX19_03438 0.89 +1.0 834,220 + -1.7 834,220 + -0.1 834,221 - -0.2 834,221 - -0.9 834,221 - -1.2 834,221 - -0.2 834,290 + -0.1 834,290 + +2.1 834,290 + +0.5 834,290 + +2.5 834,290 + +0.1 834,291 - +0.6 834,291 - +1.7 834,291 - -0.6 834,291 - -0.5 834,291 - -0.7 834,293 + -0.1 834,293 + -0.2 834,293 + -0.4 834,293 + +0.4 834,293 + -2.0 834,293 + -0.1 834,293 + -2.2 834,293 + +0.1 834,293 + +0.7 834,294 - -1.0 834,294 - +0.1 834,411 + MPMX19_03439 0.23 -0.5 834,412 - MPMX19_03439 0.23 -0.6 834,412 - MPMX19_03439 0.23 +1.3 834,412 - MPMX19_03439 0.23 +1.5 834,825 + +0.0 834,825 + -0.4 834,825 + +0.0 834,825 + -0.5 834,825 + +0.9 834,825 + -0.6 834,825 + -0.5 834,826 - +0.4 834,826 - -0.8 834,826 - -1.1 834,826 - +0.1 834,826 - -0.4 834,826 - +0.3 834,826 - +0.3 834,826 - -1.7 834,826 - +0.1 834,826 - -0.5 834,826 - +0.4 834,826 - -1.3 834,826 - -0.3 834,891 + +0.4 834,891 + -1.1 834,891 + +0.1 834,891 + +0.8 834,892 - -1.3 834,892 - -0.3 834,892 - -1.1 834,892 - +0.7 834,892 - -0.1 834,991 + MPMX19_03440 0.11 +1.0 834,991 + MPMX19_03440 0.11 +0.1 834,991 + MPMX19_03440 0.11 +0.7 834,991 + MPMX19_03440 0.11 -0.0 834,991 + MPMX19_03440 0.11 -0.1 834,991 + MPMX19_03440 0.11 +0.0 834,991 + MPMX19_03440 0.11 +0.4 834,991 + MPMX19_03440 0.11 -2.4 834,991 + MPMX19_03440 0.11 +0.7 834,991 + MPMX19_03440 0.11 +1.2 834,991 + MPMX19_03440 0.11 -0.1 834,991 + MPMX19_03440 0.11 +0.5 834,991 + MPMX19_03440 0.11 -1.0 834,991 + MPMX19_03440 0.11 +0.1 834,991 + MPMX19_03440 0.11 -0.9 834,991 + MPMX19_03440 0.11 -0.9 834,992 - MPMX19_03440 0.11 +0.6 834,992 - MPMX19_03440 0.11 -0.8 834,992 - MPMX19_03440 0.11 -1.2 834,992 - MPMX19_03440 0.11 -1.2 834,992 - MPMX19_03440 0.11 +0.1 834,992 - MPMX19_03440 0.11 +0.9 835,048 + MPMX19_03440 0.17 +0.5 835,048 + MPMX19_03440 0.17 -1.4 835,048 + MPMX19_03440 0.17 -0.1 835,048 + MPMX19_03440 0.17 -0.7 835,048 + MPMX19_03440 0.17 -0.2 835,048 + MPMX19_03440 0.17 -1.4 835,048 + MPMX19_03440 0.17 -1.2 835,049 - MPMX19_03440 0.17 -0.9 835,049 - MPMX19_03440 0.17 -0.6 835,049 - MPMX19_03440 0.17 -1.7 835,049 - MPMX19_03440 0.17 -0.3 835,049 - MPMX19_03440 0.17 -0.9 835,165 + MPMX19_03440 0.29 -0.5 835,165 + MPMX19_03440 0.29 -0.2 835,166 - MPMX19_03440 0.29 -1.0 835,166 - MPMX19_03440 0.29 +0.7 835,166 - MPMX19_03440 0.29 -0.8 835,166 - MPMX19_03440 0.29 +0.3 835,260 + MPMX19_03440 0.39 +0.7 835,261 - MPMX19_03440 0.39 -0.9 835,261 - MPMX19_03440 0.39 -0.0 835,288 + MPMX19_03440 0.42 +0.0 835,288 + MPMX19_03440 0.42 -0.0 835,288 + MPMX19_03440 0.42 -1.1 835,288 + MPMX19_03440 0.42 +0.2 835,288 + MPMX19_03440 0.42 -0.6 835,288 + MPMX19_03440 0.42 -0.2 835,288 + MPMX19_03440 0.42 -0.9 835,289 - MPMX19_03440 0.42 -0.7 835,289 - MPMX19_03440 0.42 -1.1 835,289 - MPMX19_03440 0.42 -1.3 835,289 - MPMX19_03440 0.42 +0.1 835,289 - MPMX19_03440 0.42 -1.7 835,289 - MPMX19_03440 0.42 -0.1 835,289 - MPMX19_03440 0.42 +0.4 835,289 - MPMX19_03440 0.42 -0.9 835,289 - MPMX19_03440 0.42 -0.6 835,289 - MPMX19_03440 0.42 -1.1 835,289 - MPMX19_03440 0.42 -1.4 835,289 - MPMX19_03440 0.42 -1.2 835,342 + MPMX19_03440 0.48 -0.9 835,384 + MPMX19_03440 0.52 -0.9 835,384 + MPMX19_03440 0.52 -1.9 835,384 + MPMX19_03440 0.52 -1.0 835,385 - MPMX19_03440 0.52 -0.1 835,385 - MPMX19_03440 0.52 +0.6 835,385 - MPMX19_03440 0.52 -0.9 835,385 - MPMX19_03440 0.52 +0.3 835,396 + MPMX19_03440 0.53 -0.1 835,396 + MPMX19_03440 0.53 -0.1 835,396 + MPMX19_03440 0.53 +0.6 835,397 - MPMX19_03440 0.54 +0.5 835,397 - MPMX19_03440 0.54 +0.1 835,397 - MPMX19_03440 0.54 +0.0 835,397 - MPMX19_03440 0.54 -0.9 835,487 - MPMX19_03440 0.63 +0.1 835,487 - MPMX19_03440 0.63 +0.1 835,487 - MPMX19_03440 0.63 +0.8 835,487 - MPMX19_03440 0.63 -0.6 835,615 + MPMX19_03440 0.76 -0.3 835,616 - MPMX19_03440 0.77 +1.2 835,616 - MPMX19_03440 0.77 -2.0 835,616 - MPMX19_03440 0.77 -0.4 835,616 - MPMX19_03440 0.77 +0.4 835,616 - MPMX19_03440 0.77 -2.7 835,616 - MPMX19_03440 0.77 +1.0 835,738 + MPMX19_03440 0.89 +0.9 835,739 - MPMX19_03440 0.89 +0.6 835,739 - MPMX19_03440 0.89 -0.4 835,739 - MPMX19_03440 0.89 +0.5 835,804 + -0.9 835,804 + +0.4 835,804 + +0.5 835,805 - -1.2 835,805 - -0.6 835,805 - +0.1 835,837 + -1.3
Or see this region's nucleotide sequence