Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03426

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03424 and MPMX19_03425 are separated by 16 nucleotidesMPMX19_03425 and MPMX19_03426 are separated by 12 nucleotidesMPMX19_03426 and MPMX19_03427 are separated by 159 nucleotidesMPMX19_03427 and MPMX19_03428 are separated by 3 nucleotides MPMX19_03424: MPMX19_03424 - hypothetical protein, at 815,986 to 816,651 _03424 MPMX19_03425: MPMX19_03425 - hypothetical protein, at 816,668 to 816,979 _03425 MPMX19_03426: MPMX19_03426 - Trans-aconitate 2-methyltransferase, at 816,992 to 818,419 _03426 MPMX19_03427: MPMX19_03427 - hypothetical protein, at 818,579 to 819,355 _03427 MPMX19_03428: MPMX19_03428 - hypothetical protein, at 819,359 to 821,287 _03428 Position (kb) 816 817 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.447 kb on - strand, within MPMX19_03424at 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.663 kb on - strandat 816.663 kb on - strandat 816.663 kb on - strandat 816.834 kb on + strand, within MPMX19_03425at 816.835 kb on - strand, within MPMX19_03425at 816.835 kb on - strand, within MPMX19_03425at 817.033 kb on - strandat 817.033 kb on - strandat 817.033 kb on - strandat 817.033 kb on - strandat 817.140 kb on + strand, within MPMX19_03426at 817.140 kb on + strand, within MPMX19_03426at 817.140 kb on + strand, within MPMX19_03426at 817.140 kb on + strand, within MPMX19_03426at 817.141 kb on - strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.263 kb on + strand, within MPMX19_03426at 817.264 kb on - strand, within MPMX19_03426at 817.264 kb on - strand, within MPMX19_03426at 817.264 kb on - strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.271 kb on + strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.272 kb on - strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.353 kb on + strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.354 kb on - strand, within MPMX19_03426at 817.496 kb on + strand, within MPMX19_03426at 817.525 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.551 kb on + strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.552 kb on - strand, within MPMX19_03426at 817.593 kb on + strand, within MPMX19_03426at 817.593 kb on + strand, within MPMX19_03426at 817.594 kb on - strand, within MPMX19_03426at 817.594 kb on - strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.617 kb on + strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.618 kb on - strand, within MPMX19_03426at 817.714 kb on - strand, within MPMX19_03426at 817.952 kb on + strand, within MPMX19_03426at 817.952 kb on + strand, within MPMX19_03426at 817.953 kb on - strand, within MPMX19_03426at 817.953 kb on - strand, within MPMX19_03426at 818.092 kb on - strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.181 kb on + strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.182 kb on - strand, within MPMX19_03426at 818.398 kb on + strandat 818.399 kb on - strandat 818.399 kb on - strandat 818.445 kb on + strandat 818.446 kb on - strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.455 kb on + strandat 818.456 kb on - strandat 818.557 kb on + strandat 818.557 kb on + strandat 818.558 kb on - strandat 818.558 kb on - strandat 819.183 kb on + strand, within MPMX19_03427at 819.183 kb on + strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.184 kb on - strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.194 kb on + strand, within MPMX19_03427at 819.195 kb on - strand, within MPMX19_03427at 819.195 kb on - strand, within MPMX19_03427at 819.195 kb on - strand, within MPMX19_03427at 819.353 kb on + strandat 819.354 kb on - strandat 819.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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816,077 + MPMX19_03424 0.14 -0.7
816,077 + MPMX19_03424 0.14 -1.6
816,077 + MPMX19_03424 0.14 -1.1
816,077 + MPMX19_03424 0.14 -0.4
816,077 + MPMX19_03424 0.14 -0.1
816,077 + MPMX19_03424 0.14 -0.3
816,077 + MPMX19_03424 0.14 -1.3
816,077 + MPMX19_03424 0.14 +0.4
816,077 + MPMX19_03424 0.14 -0.1
816,077 + MPMX19_03424 0.14 +1.7
816,077 + MPMX19_03424 0.14 +0.3
816,077 + MPMX19_03424 0.14 -0.7
816,077 + MPMX19_03424 0.14 -0.3
816,077 + MPMX19_03424 0.14 -1.8
816,078 - MPMX19_03424 0.14 -0.8
816,078 - MPMX19_03424 0.14 -0.4
816,078 - MPMX19_03424 0.14 -2.0
816,078 - MPMX19_03424 0.14 -1.3
816,078 - MPMX19_03424 0.14 -0.0
816,078 - MPMX19_03424 0.14 +0.1
816,078 - MPMX19_03424 0.14 -1.1
816,078 - MPMX19_03424 0.14 -1.3
816,078 - MPMX19_03424 0.14 -0.0
816,078 - MPMX19_03424 0.14 -0.1
816,078 - MPMX19_03424 0.14 -0.3
816,078 - MPMX19_03424 0.14 -1.6
816,078 - MPMX19_03424 0.14 -0.5
816,078 - MPMX19_03424 0.14 -0.3
816,155 + MPMX19_03424 0.25 +1.0
816,155 + MPMX19_03424 0.25 -2.4
816,155 + MPMX19_03424 0.25 +0.4
816,155 + MPMX19_03424 0.25 -1.3
816,155 + MPMX19_03424 0.25 -0.6
816,155 + MPMX19_03424 0.25 -1.1
816,155 + MPMX19_03424 0.25 +0.8
816,155 + MPMX19_03424 0.25 -0.3
816,155 + MPMX19_03424 0.25 +1.0
816,155 + MPMX19_03424 0.25 -0.1
816,155 + MPMX19_03424 0.25 -0.5
816,156 - MPMX19_03424 0.26 -1.4
816,156 - MPMX19_03424 0.26 +0.4
816,156 - MPMX19_03424 0.26 -0.0
816,156 - MPMX19_03424 0.26 -0.1
816,156 - MPMX19_03424 0.26 -0.1
816,156 - MPMX19_03424 0.26 +0.6
816,156 - MPMX19_03424 0.26 +0.1
816,156 - MPMX19_03424 0.26 -0.4
816,447 - MPMX19_03424 0.69 -1.1
816,662 + -0.4
816,662 + -0.9
816,662 + -1.7
816,662 + +0.3
816,662 + +0.4
816,663 - +1.1
816,663 - -2.7
816,663 - +0.8
816,834 + MPMX19_03425 0.53 -0.3
816,835 - MPMX19_03425 0.54 -1.9
816,835 - MPMX19_03425 0.54 +0.1
817,033 - +0.9
817,033 - +1.7
817,033 - +0.4
817,033 - +1.0
817,140 + MPMX19_03426 0.10 +0.0
817,140 + MPMX19_03426 0.10 +0.4
817,140 + MPMX19_03426 0.10 +1.2
817,140 + MPMX19_03426 0.10 +1.7
817,141 - MPMX19_03426 0.10 -0.9
817,263 + MPMX19_03426 0.19 -0.1
817,263 + MPMX19_03426 0.19 -0.1
817,263 + MPMX19_03426 0.19 -0.9
817,263 + MPMX19_03426 0.19 +0.6
817,263 + MPMX19_03426 0.19 -0.1
817,264 - MPMX19_03426 0.19 -0.4
817,264 - MPMX19_03426 0.19 +0.6
817,264 - MPMX19_03426 0.19 -1.3
817,271 + MPMX19_03426 0.20 +2.0
817,271 + MPMX19_03426 0.20 -1.4
817,271 + MPMX19_03426 0.20 -0.2
817,271 + MPMX19_03426 0.20 -0.6
817,271 + MPMX19_03426 0.20 +0.4
817,271 + MPMX19_03426 0.20 -1.6
817,271 + MPMX19_03426 0.20 -0.0
817,271 + MPMX19_03426 0.20 -1.3
817,272 - MPMX19_03426 0.20 -0.0
817,272 - MPMX19_03426 0.20 -0.7
817,272 - MPMX19_03426 0.20 +0.7
817,272 - MPMX19_03426 0.20 -0.7
817,353 + MPMX19_03426 0.25 +0.3
817,353 + MPMX19_03426 0.25 -1.6
817,353 + MPMX19_03426 0.25 -1.7
817,353 + MPMX19_03426 0.25 -0.7
817,354 - MPMX19_03426 0.25 -1.1
817,354 - MPMX19_03426 0.25 +1.5
817,354 - MPMX19_03426 0.25 -0.5
817,354 - MPMX19_03426 0.25 -0.8
817,496 + MPMX19_03426 0.35 +0.5
817,525 + MPMX19_03426 0.37 +0.7
817,551 + MPMX19_03426 0.39 -2.4
817,551 + MPMX19_03426 0.39 -0.0
817,551 + MPMX19_03426 0.39 -1.3
817,551 + MPMX19_03426 0.39 -0.8
817,552 - MPMX19_03426 0.39 -0.1
817,552 - MPMX19_03426 0.39 -0.2
817,552 - MPMX19_03426 0.39 +1.4
817,552 - MPMX19_03426 0.39 -0.4
817,552 - MPMX19_03426 0.39 +0.5
817,593 + MPMX19_03426 0.42 +1.0
817,593 + MPMX19_03426 0.42 -2.1
817,594 - MPMX19_03426 0.42 -0.3
817,594 - MPMX19_03426 0.42 +0.1
817,617 + MPMX19_03426 0.44 +0.7
817,617 + MPMX19_03426 0.44 -0.1
817,617 + MPMX19_03426 0.44 -0.9
817,617 + MPMX19_03426 0.44 -0.5
817,617 + MPMX19_03426 0.44 -0.1
817,617 + MPMX19_03426 0.44 -0.1
817,617 + MPMX19_03426 0.44 -0.3
817,618 - MPMX19_03426 0.44 -1.4
817,618 - MPMX19_03426 0.44 -0.9
817,618 - MPMX19_03426 0.44 +0.1
817,618 - MPMX19_03426 0.44 +0.8
817,618 - MPMX19_03426 0.44 -0.7
817,618 - MPMX19_03426 0.44 -1.4
817,618 - MPMX19_03426 0.44 +2.0
817,618 - MPMX19_03426 0.44 -0.3
817,618 - MPMX19_03426 0.44 +1.7
817,618 - MPMX19_03426 0.44 -3.1
817,618 - MPMX19_03426 0.44 +0.5
817,618 - MPMX19_03426 0.44 -0.2
817,618 - MPMX19_03426 0.44 -0.9
817,714 - MPMX19_03426 0.51 +0.9
817,952 + MPMX19_03426 0.67 -1.2
817,952 + MPMX19_03426 0.67 +0.1
817,953 - MPMX19_03426 0.67 +0.7
817,953 - MPMX19_03426 0.67 +0.1
818,092 - MPMX19_03426 0.77 -2.0
818,181 + MPMX19_03426 0.83 +0.5
818,181 + MPMX19_03426 0.83 +0.1
818,181 + MPMX19_03426 0.83 +0.7
818,181 + MPMX19_03426 0.83 -0.3
818,181 + MPMX19_03426 0.83 -0.9
818,181 + MPMX19_03426 0.83 -0.0
818,182 - MPMX19_03426 0.83 -1.0
818,182 - MPMX19_03426 0.83 +0.4
818,182 - MPMX19_03426 0.83 -0.3
818,182 - MPMX19_03426 0.83 +0.5
818,398 + -0.4
818,399 - +1.6
818,399 - -1.2
818,445 + +0.3
818,446 - -0.3
818,455 + -0.0
818,455 + -1.3
818,455 + -0.8
818,455 + +0.3
818,455 + -0.6
818,456 - -1.9
818,557 + +0.3
818,557 + -1.6
818,558 - +0.1
818,558 - +0.9
819,183 + MPMX19_03427 0.78 -1.3
819,183 + MPMX19_03427 0.78 -1.4
819,184 - MPMX19_03427 0.78 -1.6
819,184 - MPMX19_03427 0.78 -0.4
819,184 - MPMX19_03427 0.78 -0.7
819,184 - MPMX19_03427 0.78 +1.4
819,194 + MPMX19_03427 0.79 -0.5
819,194 + MPMX19_03427 0.79 +0.1
819,194 + MPMX19_03427 0.79 -1.0
819,194 + MPMX19_03427 0.79 +1.4
819,194 + MPMX19_03427 0.79 -0.1
819,195 - MPMX19_03427 0.79 -1.3
819,195 - MPMX19_03427 0.79 -0.7
819,195 - MPMX19_03427 0.79 +0.4
819,353 + -1.3
819,354 - +0.7
819,354 - -1.4

Or see this region's nucleotide sequence