Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03423

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03422 and MPMX19_03423 are separated by 46 nucleotidesMPMX19_03423 and MPMX19_03424 are separated by 206 nucleotidesMPMX19_03424 and MPMX19_03425 are separated by 16 nucleotides MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190 _03422 MPMX19_03423: MPMX19_03423 - hypothetical protein, at 815,237 to 815,779 _03423 MPMX19_03424: MPMX19_03424 - hypothetical protein, at 815,986 to 816,651 _03424 MPMX19_03425: MPMX19_03425 - hypothetical protein, at 816,668 to 816,979 _03425 Position (kb) 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.454 kb on + strand, within MPMX19_03422at 814.455 kb on - strand, within MPMX19_03422at 814.496 kb on + strand, within MPMX19_03422at 814.497 kb on - strand, within MPMX19_03422at 814.497 kb on - strand, within MPMX19_03422at 814.497 kb on - strand, within MPMX19_03422at 814.684 kb on + strand, within MPMX19_03422at 814.684 kb on + strand, within MPMX19_03422at 814.684 kb on + strand, within MPMX19_03422at 814.684 kb on + strand, within MPMX19_03422at 814.685 kb on - strand, within MPMX19_03422at 814.685 kb on - strand, within MPMX19_03422at 814.685 kb on - strand, within MPMX19_03422at 814.685 kb on - strand, within MPMX19_03422at 814.685 kb on - strand, within MPMX19_03422at 814.685 kb on - strand, within MPMX19_03422at 814.712 kb on + strand, within MPMX19_03422at 814.713 kb on - strand, within MPMX19_03422at 814.713 kb on - strand, within MPMX19_03422at 814.713 kb on - strand, within MPMX19_03422at 814.733 kb on + strand, within MPMX19_03422at 814.733 kb on + strand, within MPMX19_03422at 814.734 kb on - strand, within MPMX19_03422at 814.734 kb on - strand, within MPMX19_03422at 814.757 kb on + strand, within MPMX19_03422at 814.757 kb on + strand, within MPMX19_03422at 814.769 kb on + strand, within MPMX19_03422at 814.769 kb on + strand, within MPMX19_03422at 814.769 kb on + strand, within MPMX19_03422at 814.769 kb on + strand, within MPMX19_03422at 814.769 kb on + strand, within MPMX19_03422at 814.770 kb on - strand, within MPMX19_03422at 814.770 kb on - strand, within MPMX19_03422at 814.770 kb on - strand, within MPMX19_03422at 814.770 kb on - strand, within MPMX19_03422at 814.898 kb on + strand, within MPMX19_03422at 814.898 kb on + strand, within MPMX19_03422at 814.898 kb on + strand, within MPMX19_03422at 814.898 kb on + strand, within MPMX19_03422at 814.898 kb on + strand, within MPMX19_03422at 814.899 kb on - strand, within MPMX19_03422at 814.899 kb on - strand, within MPMX19_03422at 814.899 kb on - strand, within MPMX19_03422at 814.899 kb on - strand, within MPMX19_03422at 815.090 kb on + strandat 815.185 kb on - strandat 815.217 kb on + strandat 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.718 kb on + strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.719 kb on - strand, within MPMX19_03423at 815.860 kb on + strandat 815.873 kb on + strandat 815.873 kb on + strandat 815.873 kb on + strandat 815.874 kb on - strandat 815.902 kb on - strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.921 kb on + strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.922 kb on - strandat 815.924 kb on + strandat 815.987 kb on + strandat 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.077 kb on + strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.078 kb on - strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.155 kb on + strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.156 kb on - strand, within MPMX19_03424at 816.447 kb on - strand, within MPMX19_03424at 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.662 kb on + strandat 816.663 kb on - strandat 816.663 kb on - strandat 816.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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814,322 + MPMX19_03422 0.41 -0.3
814,322 + MPMX19_03422 0.41 -0.7
814,322 + MPMX19_03422 0.41 -0.6
814,322 + MPMX19_03422 0.41 +0.1
814,322 + MPMX19_03422 0.41 +0.5
814,322 + MPMX19_03422 0.41 -1.0
814,322 + MPMX19_03422 0.41 +0.3
814,322 + MPMX19_03422 0.41 +1.2
814,323 - MPMX19_03422 0.41 +0.9
814,323 - MPMX19_03422 0.41 -1.9
814,323 - MPMX19_03422 0.41 +1.6
814,323 - MPMX19_03422 0.41 -1.0
814,323 - MPMX19_03422 0.41 -1.0
814,323 - MPMX19_03422 0.41 +0.6
814,323 - MPMX19_03422 0.41 -0.4
814,323 - MPMX19_03422 0.41 -0.1
814,382 + MPMX19_03422 0.45 -1.1
814,382 + MPMX19_03422 0.45 +0.4
814,382 + MPMX19_03422 0.45 +1.1
814,382 + MPMX19_03422 0.45 +0.1
814,382 + MPMX19_03422 0.45 +0.8
814,382 + MPMX19_03422 0.45 -0.6
814,382 + MPMX19_03422 0.45 -0.1
814,383 - MPMX19_03422 0.45 -0.6
814,383 - MPMX19_03422 0.45 -0.0
814,383 - MPMX19_03422 0.45 -1.3
814,383 - MPMX19_03422 0.45 +0.1
814,454 + MPMX19_03422 0.50 -0.9
814,455 - MPMX19_03422 0.50 +1.2
814,496 + MPMX19_03422 0.53 +1.2
814,497 - MPMX19_03422 0.53 -0.5
814,497 - MPMX19_03422 0.53 -0.1
814,497 - MPMX19_03422 0.53 -0.6
814,684 + MPMX19_03422 0.66 -0.7
814,684 + MPMX19_03422 0.66 -0.1
814,684 + MPMX19_03422 0.66 +0.8
814,684 + MPMX19_03422 0.66 +0.3
814,685 - MPMX19_03422 0.66 +0.1
814,685 - MPMX19_03422 0.66 -2.9
814,685 - MPMX19_03422 0.66 -1.1
814,685 - MPMX19_03422 0.66 +0.2
814,685 - MPMX19_03422 0.66 -0.1
814,685 - MPMX19_03422 0.66 -0.3
814,712 + MPMX19_03422 0.67 -0.4
814,713 - MPMX19_03422 0.67 -0.4
814,713 - MPMX19_03422 0.67 -0.6
814,713 - MPMX19_03422 0.67 -1.8
814,733 + MPMX19_03422 0.69 +0.1
814,733 + MPMX19_03422 0.69 -0.4
814,734 - MPMX19_03422 0.69 -0.7
814,734 - MPMX19_03422 0.69 -2.2
814,757 + MPMX19_03422 0.70 +0.7
814,757 + MPMX19_03422 0.70 +1.7
814,769 + MPMX19_03422 0.71 -0.7
814,769 + MPMX19_03422 0.71 +1.0
814,769 + MPMX19_03422 0.71 -1.7
814,769 + MPMX19_03422 0.71 -0.2
814,769 + MPMX19_03422 0.71 -1.0
814,770 - MPMX19_03422 0.71 -0.6
814,770 - MPMX19_03422 0.71 -0.3
814,770 - MPMX19_03422 0.71 -0.6
814,770 - MPMX19_03422 0.71 -1.0
814,898 + MPMX19_03422 0.80 +1.1
814,898 + MPMX19_03422 0.80 -0.9
814,898 + MPMX19_03422 0.80 +0.5
814,898 + MPMX19_03422 0.80 -0.7
814,898 + MPMX19_03422 0.80 +0.6
814,899 - MPMX19_03422 0.80 -1.2
814,899 - MPMX19_03422 0.80 -0.7
814,899 - MPMX19_03422 0.80 -0.6
814,899 - MPMX19_03422 0.80 +0.3
815,090 + +0.5
815,185 - +0.7
815,217 + -1.4
815,718 + MPMX19_03423 0.89 -1.1
815,718 + MPMX19_03423 0.89 +1.1
815,718 + MPMX19_03423 0.89 +0.7
815,718 + MPMX19_03423 0.89 -0.4
815,718 + MPMX19_03423 0.89 -0.1
815,718 + MPMX19_03423 0.89 -2.2
815,719 - MPMX19_03423 0.89 +1.3
815,719 - MPMX19_03423 0.89 -0.4
815,719 - MPMX19_03423 0.89 -0.3
815,719 - MPMX19_03423 0.89 +0.1
815,719 - MPMX19_03423 0.89 +0.1
815,719 - MPMX19_03423 0.89 -0.1
815,860 + -0.5
815,873 + +0.7
815,873 + +0.7
815,873 + -1.1
815,874 - -0.9
815,902 - -0.8
815,921 + -1.4
815,921 + +1.7
815,921 + -1.6
815,921 + -0.9
815,921 + +0.5
815,921 + -1.3
815,922 - +0.5
815,922 - +0.3
815,922 - +0.9
815,922 - +0.1
815,922 - -0.5
815,922 - -0.1
815,922 - -1.0
815,924 + +0.4
815,987 + -1.1
816,077 + MPMX19_03424 0.14 -0.7
816,077 + MPMX19_03424 0.14 -1.6
816,077 + MPMX19_03424 0.14 -1.1
816,077 + MPMX19_03424 0.14 -0.4
816,077 + MPMX19_03424 0.14 -0.1
816,077 + MPMX19_03424 0.14 -0.3
816,077 + MPMX19_03424 0.14 -1.3
816,077 + MPMX19_03424 0.14 +0.4
816,077 + MPMX19_03424 0.14 -0.1
816,077 + MPMX19_03424 0.14 +1.7
816,077 + MPMX19_03424 0.14 +0.3
816,077 + MPMX19_03424 0.14 -0.7
816,077 + MPMX19_03424 0.14 -0.3
816,077 + MPMX19_03424 0.14 -1.8
816,078 - MPMX19_03424 0.14 -0.8
816,078 - MPMX19_03424 0.14 -0.4
816,078 - MPMX19_03424 0.14 -2.0
816,078 - MPMX19_03424 0.14 -1.3
816,078 - MPMX19_03424 0.14 -0.0
816,078 - MPMX19_03424 0.14 +0.1
816,078 - MPMX19_03424 0.14 -1.1
816,078 - MPMX19_03424 0.14 -1.3
816,078 - MPMX19_03424 0.14 -0.0
816,078 - MPMX19_03424 0.14 -0.1
816,078 - MPMX19_03424 0.14 -0.3
816,078 - MPMX19_03424 0.14 -1.6
816,078 - MPMX19_03424 0.14 -0.5
816,078 - MPMX19_03424 0.14 -0.3
816,155 + MPMX19_03424 0.25 +1.0
816,155 + MPMX19_03424 0.25 -2.4
816,155 + MPMX19_03424 0.25 +0.4
816,155 + MPMX19_03424 0.25 -1.3
816,155 + MPMX19_03424 0.25 -0.6
816,155 + MPMX19_03424 0.25 -1.1
816,155 + MPMX19_03424 0.25 +0.8
816,155 + MPMX19_03424 0.25 -0.3
816,155 + MPMX19_03424 0.25 +1.0
816,155 + MPMX19_03424 0.25 -0.1
816,155 + MPMX19_03424 0.25 -0.5
816,156 - MPMX19_03424 0.26 -1.4
816,156 - MPMX19_03424 0.26 +0.4
816,156 - MPMX19_03424 0.26 -0.0
816,156 - MPMX19_03424 0.26 -0.1
816,156 - MPMX19_03424 0.26 -0.1
816,156 - MPMX19_03424 0.26 +0.6
816,156 - MPMX19_03424 0.26 +0.1
816,156 - MPMX19_03424 0.26 -0.4
816,447 - MPMX19_03424 0.69 -1.1
816,662 + -0.4
816,662 + -0.9
816,662 + -1.7
816,662 + +0.3
816,662 + +0.4
816,663 - +1.1
816,663 - -2.7
816,663 - +0.8

Or see this region's nucleotide sequence