Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03413

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03412 and MPMX19_03413 are separated by 306 nucleotidesMPMX19_03413 and MPMX19_03414 are separated by 105 nucleotidesMPMX19_03414 and MPMX19_03415 are separated by 30 nucleotides MPMX19_03412: MPMX19_03412 - putative cystine transporter YijE, at 801,312 to 802,247 _03412 MPMX19_03413: MPMX19_03413 - hypothetical protein, at 802,554 to 803,690 _03413 MPMX19_03414: MPMX19_03414 - hypothetical protein, at 803,796 to 804,185 _03414 MPMX19_03415: MPMX19_03415 - hypothetical protein, at 804,216 to 804,908 _03415 Position (kb) 802 803 804Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.816 kb on - strand, within MPMX19_03412at 802.033 kb on - strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.514 kb on - strandat 802.722 kb on + strand, within MPMX19_03413at 802.722 kb on + strand, within MPMX19_03413at 802.722 kb on + strand, within MPMX19_03413at 802.722 kb on + strand, within MPMX19_03413at 802.723 kb on - strand, within MPMX19_03413at 802.723 kb on - strand, within MPMX19_03413at 802.917 kb on + strand, within MPMX19_03413at 802.917 kb on + strand, within MPMX19_03413at 802.918 kb on - strand, within MPMX19_03413at 802.918 kb on - strand, within MPMX19_03413at 803.208 kb on + strand, within MPMX19_03413at 803.208 kb on + strand, within MPMX19_03413at 803.209 kb on - strand, within MPMX19_03413at 803.209 kb on - strand, within MPMX19_03413at 803.209 kb on - strand, within MPMX19_03413at 803.316 kb on + strand, within MPMX19_03413at 803.316 kb on + strand, within MPMX19_03413at 803.361 kb on + strand, within MPMX19_03413at 803.501 kb on + strand, within MPMX19_03413at 803.502 kb on - strand, within MPMX19_03413at 803.524 kb on - strand, within MPMX19_03413at 803.553 kb on + strand, within MPMX19_03413at 803.553 kb on + strand, within MPMX19_03413at 803.554 kb on - strand, within MPMX19_03413at 803.554 kb on - strand, within MPMX19_03413at 803.554 kb on - strand, within MPMX19_03413at 803.753 kb on - strandat 803.753 kb on - strandat 803.753 kb on - strandat 804.310 kb on + strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.311 kb on - strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.454 kb on + strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.455 kb on - strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.490 kb on + strand, within MPMX19_03415at 804.491 kb on - strand, within MPMX19_03415at 804.491 kb on - strand, within MPMX19_03415at 804.549 kb on - strand, within MPMX19_03415at 804.549 kb on - strand, within MPMX19_03415at 804.565 kb on + strand, within MPMX19_03415at 804.565 kb on + strand, within MPMX19_03415at 804.566 kb on - strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.598 kb on + strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.599 kb on - strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.631 kb on + strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.632 kb on - strand, within MPMX19_03415at 804.667 kb on + strand, within MPMX19_03415at 804.667 kb on + strand, within MPMX19_03415at 804.667 kb on + strand, within MPMX19_03415at 804.668 kb on - strand, within MPMX19_03415

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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801,675 + MPMX19_03412 0.39 -1.1
801,675 + MPMX19_03412 0.39 +0.2
801,675 + MPMX19_03412 0.39 -0.4
801,675 + MPMX19_03412 0.39 +0.7
801,675 + MPMX19_03412 0.39 +0.4
801,675 + MPMX19_03412 0.39 +2.2
801,676 - MPMX19_03412 0.39 -0.7
801,676 - MPMX19_03412 0.39 +0.3
801,676 - MPMX19_03412 0.39 +0.5
801,676 - MPMX19_03412 0.39 -0.1
801,676 - MPMX19_03412 0.39 -0.9
801,676 - MPMX19_03412 0.39 +0.6
801,676 - MPMX19_03412 0.39 -0.3
801,676 - MPMX19_03412 0.39 -3.1
801,676 - MPMX19_03412 0.39 -0.7
801,816 - MPMX19_03412 0.54 -1.1
802,033 - MPMX19_03412 0.77 +0.4
802,062 + MPMX19_03412 0.80 -0.1
802,062 + MPMX19_03412 0.80 -1.6
802,062 + MPMX19_03412 0.80 -0.7
802,063 - MPMX19_03412 0.80 -0.3
802,063 - MPMX19_03412 0.80 -0.4
802,063 - MPMX19_03412 0.80 -0.8
802,514 - -0.3
802,722 + MPMX19_03413 0.15 -1.6
802,722 + MPMX19_03413 0.15 -1.6
802,722 + MPMX19_03413 0.15 -1.7
802,722 + MPMX19_03413 0.15 -0.8
802,723 - MPMX19_03413 0.15 -1.1
802,723 - MPMX19_03413 0.15 -1.7
802,917 + MPMX19_03413 0.32 -0.2
802,917 + MPMX19_03413 0.32 -2.4
802,918 - MPMX19_03413 0.32 -1.4
802,918 - MPMX19_03413 0.32 +0.9
803,208 + MPMX19_03413 0.58 -2.0
803,208 + MPMX19_03413 0.58 +1.4
803,209 - MPMX19_03413 0.58 +0.1
803,209 - MPMX19_03413 0.58 -0.4
803,209 - MPMX19_03413 0.58 -1.6
803,316 + MPMX19_03413 0.67 -2.0
803,316 + MPMX19_03413 0.67 -0.4
803,361 + MPMX19_03413 0.71 -0.1
803,501 + MPMX19_03413 0.83 -0.3
803,502 - MPMX19_03413 0.83 -0.4
803,524 - MPMX19_03413 0.85 -1.7
803,553 + MPMX19_03413 0.88 +0.5
803,553 + MPMX19_03413 0.88 -0.4
803,554 - MPMX19_03413 0.88 +0.4
803,554 - MPMX19_03413 0.88 -0.1
803,554 - MPMX19_03413 0.88 +0.7
803,753 - +0.6
803,753 - -1.7
803,753 - +1.0
804,310 + MPMX19_03415 0.14 -0.1
804,311 - MPMX19_03415 0.14 +0.1
804,311 - MPMX19_03415 0.14 +0.7
804,311 - MPMX19_03415 0.14 +0.3
804,311 - MPMX19_03415 0.14 +1.1
804,311 - MPMX19_03415 0.14 +0.4
804,454 + MPMX19_03415 0.34 -1.4
804,454 + MPMX19_03415 0.34 -1.4
804,454 + MPMX19_03415 0.34 +0.3
804,454 + MPMX19_03415 0.34 +0.1
804,454 + MPMX19_03415 0.34 -0.5
804,454 + MPMX19_03415 0.34 -0.4
804,455 - MPMX19_03415 0.34 -0.6
804,455 - MPMX19_03415 0.34 -0.4
804,455 - MPMX19_03415 0.34 -0.1
804,455 - MPMX19_03415 0.34 -0.9
804,455 - MPMX19_03415 0.34 -1.4
804,455 - MPMX19_03415 0.34 -2.4
804,490 + MPMX19_03415 0.40 +0.9
804,490 + MPMX19_03415 0.40 +0.3
804,490 + MPMX19_03415 0.40 -0.8
804,490 + MPMX19_03415 0.40 -1.0
804,490 + MPMX19_03415 0.40 +0.7
804,491 - MPMX19_03415 0.40 -0.9
804,491 - MPMX19_03415 0.40 -1.3
804,549 - MPMX19_03415 0.48 -2.8
804,549 - MPMX19_03415 0.48 -1.4
804,565 + MPMX19_03415 0.50 +1.0
804,565 + MPMX19_03415 0.50 -1.8
804,566 - MPMX19_03415 0.51 -1.9
804,598 + MPMX19_03415 0.55 +0.6
804,598 + MPMX19_03415 0.55 +1.1
804,598 + MPMX19_03415 0.55 +0.6
804,598 + MPMX19_03415 0.55 +0.4
804,598 + MPMX19_03415 0.55 +1.3
804,598 + MPMX19_03415 0.55 +1.1
804,599 - MPMX19_03415 0.55 -0.6
804,599 - MPMX19_03415 0.55 +1.0
804,599 - MPMX19_03415 0.55 -0.9
804,599 - MPMX19_03415 0.55 -1.0
804,599 - MPMX19_03415 0.55 +0.4
804,631 + MPMX19_03415 0.60 -0.7
804,631 + MPMX19_03415 0.60 -1.3
804,631 + MPMX19_03415 0.60 +1.0
804,631 + MPMX19_03415 0.60 +0.4
804,631 + MPMX19_03415 0.60 -2.6
804,632 - MPMX19_03415 0.60 +0.0
804,632 - MPMX19_03415 0.60 -0.4
804,632 - MPMX19_03415 0.60 -0.9
804,632 - MPMX19_03415 0.60 +0.2
804,632 - MPMX19_03415 0.60 -0.3
804,632 - MPMX19_03415 0.60 -0.3
804,632 - MPMX19_03415 0.60 -1.1
804,632 - MPMX19_03415 0.60 +0.1
804,632 - MPMX19_03415 0.60 +1.1
804,632 - MPMX19_03415 0.60 -1.0
804,632 - MPMX19_03415 0.60 -0.3
804,632 - MPMX19_03415 0.60 -2.2
804,632 - MPMX19_03415 0.60 -1.3
804,632 - MPMX19_03415 0.60 -0.7
804,632 - MPMX19_03415 0.60 +0.4
804,632 - MPMX19_03415 0.60 -1.2
804,667 + MPMX19_03415 0.65 -0.8
804,667 + MPMX19_03415 0.65 +1.3
804,667 + MPMX19_03415 0.65 -0.2
804,668 - MPMX19_03415 0.65 -2.2

Or see this region's nucleotide sequence