Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03405

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03404 and MPMX19_03405 are separated by 291 nucleotidesMPMX19_03405 and MPMX19_03406 are separated by 173 nucleotides MPMX19_03404: MPMX19_03404 - Glutathione-binding protein GsiB, at 791,097 to 792,599 _03404 MPMX19_03405: MPMX19_03405 - hypothetical protein, at 792,891 to 794,300 _03405 MPMX19_03406: MPMX19_03406 - HTH-type transcriptional regulator HdfR, at 794,474 to 795,430 _03406 Position (kb) 792 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2 3at 791.992 kb on + strand, within MPMX19_03404at 791.992 kb on + strand, within MPMX19_03404at 791.993 kb on - strand, within MPMX19_03404at 791.993 kb on - strand, within MPMX19_03404at 791.993 kb on - strand, within MPMX19_03404at 791.993 kb on - strand, within MPMX19_03404at 791.993 kb on - strand, within MPMX19_03404at 791.993 kb on - strand, within MPMX19_03404at 792.433 kb on + strand, within MPMX19_03404at 792.434 kb on - strand, within MPMX19_03404at 792.434 kb on - strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.445 kb on + strand, within MPMX19_03404at 792.446 kb on - strand, within MPMX19_03404at 792.446 kb on - strand, within MPMX19_03404at 792.446 kb on - strand, within MPMX19_03404at 792.446 kb on - strand, within MPMX19_03404at 792.796 kb on - strandat 792.838 kb on + strandat 792.839 kb on - strandat 792.863 kb on + strandat 793.031 kb on + strandat 793.031 kb on + strandat 793.032 kb on - strand, within MPMX19_03405at 793.091 kb on + strand, within MPMX19_03405at 793.092 kb on - strand, within MPMX19_03405at 793.092 kb on - strand, within MPMX19_03405at 793.092 kb on - strand, within MPMX19_03405at 793.092 kb on - strand, within MPMX19_03405at 793.270 kb on + strand, within MPMX19_03405at 793.271 kb on - strand, within MPMX19_03405at 793.271 kb on - strand, within MPMX19_03405at 793.339 kb on + strand, within MPMX19_03405at 793.339 kb on + strand, within MPMX19_03405at 793.339 kb on + strand, within MPMX19_03405at 793.339 kb on + strand, within MPMX19_03405at 793.339 kb on + strand, within MPMX19_03405at 793.339 kb on + strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.340 kb on - strand, within MPMX19_03405at 793.471 kb on + strand, within MPMX19_03405at 793.471 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.834 kb on + strand, within MPMX19_03405at 793.835 kb on - strand, within MPMX19_03405at 793.835 kb on - strand, within MPMX19_03405at 793.835 kb on - strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.867 kb on + strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.868 kb on - strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.987 kb on + strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 793.988 kb on - strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.095 kb on + strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.096 kb on - strand, within MPMX19_03405at 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.422 kb on + strandat 794.423 kb on - strandat 794.423 kb on - strandat 794.423 kb on - strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.427 kb on + strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 794.428 kb on - strandat 795.121 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.247 kb on + strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406at 795.248 kb on - strand, within MPMX19_03406

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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791,992 + MPMX19_03404 0.60 -1.6
791,992 + MPMX19_03404 0.60 -0.8
791,993 - MPMX19_03404 0.60 -0.0
791,993 - MPMX19_03404 0.60 -1.1
791,993 - MPMX19_03404 0.60 -0.3
791,993 - MPMX19_03404 0.60 -0.7
791,993 - MPMX19_03404 0.60 +0.6
791,993 - MPMX19_03404 0.60 +2.0
792,433 + MPMX19_03404 0.89 -0.6
792,434 - MPMX19_03404 0.89 -0.5
792,434 - MPMX19_03404 0.89 -1.1
792,445 + MPMX19_03404 0.90 +0.1
792,445 + MPMX19_03404 0.90 -0.4
792,445 + MPMX19_03404 0.90 -1.4
792,445 + MPMX19_03404 0.90 +0.1
792,445 + MPMX19_03404 0.90 -0.9
792,445 + MPMX19_03404 0.90 -0.9
792,445 + MPMX19_03404 0.90 -0.7
792,445 + MPMX19_03404 0.90 +0.8
792,445 + MPMX19_03404 0.90 -0.6
792,445 + MPMX19_03404 0.90 -2.0
792,445 + MPMX19_03404 0.90 -0.1
792,445 + MPMX19_03404 0.90 +0.2
792,445 + MPMX19_03404 0.90 -0.0
792,446 - MPMX19_03404 0.90 +2.4
792,446 - MPMX19_03404 0.90 +0.6
792,446 - MPMX19_03404 0.90 -0.0
792,446 - MPMX19_03404 0.90 -1.1
792,796 - +0.1
792,838 + -0.1
792,839 - +1.0
792,863 + +0.7
793,031 + -0.9
793,031 + -0.5
793,032 - MPMX19_03405 0.10 -1.1
793,091 + MPMX19_03405 0.14 -0.9
793,092 - MPMX19_03405 0.14 -1.4
793,092 - MPMX19_03405 0.14 -0.3
793,092 - MPMX19_03405 0.14 -0.1
793,092 - MPMX19_03405 0.14 +0.1
793,270 + MPMX19_03405 0.27 -0.1
793,271 - MPMX19_03405 0.27 -0.4
793,271 - MPMX19_03405 0.27 -0.1
793,339 + MPMX19_03405 0.32 -0.1
793,339 + MPMX19_03405 0.32 -1.2
793,339 + MPMX19_03405 0.32 +0.8
793,339 + MPMX19_03405 0.32 -0.4
793,339 + MPMX19_03405 0.32 -1.3
793,339 + MPMX19_03405 0.32 +0.1
793,340 - MPMX19_03405 0.32 +0.4
793,340 - MPMX19_03405 0.32 -0.1
793,340 - MPMX19_03405 0.32 -0.6
793,340 - MPMX19_03405 0.32 -0.4
793,340 - MPMX19_03405 0.32 -0.6
793,340 - MPMX19_03405 0.32 +0.4
793,340 - MPMX19_03405 0.32 +0.7
793,340 - MPMX19_03405 0.32 +1.2
793,471 + MPMX19_03405 0.41 +0.1
793,471 + MPMX19_03405 0.41 +0.7
793,834 + MPMX19_03405 0.67 +0.4
793,834 + MPMX19_03405 0.67 -0.9
793,834 + MPMX19_03405 0.67 +0.1
793,834 + MPMX19_03405 0.67 -1.6
793,834 + MPMX19_03405 0.67 -1.1
793,834 + MPMX19_03405 0.67 -0.9
793,834 + MPMX19_03405 0.67 -0.4
793,834 + MPMX19_03405 0.67 -0.3
793,834 + MPMX19_03405 0.67 +0.4
793,834 + MPMX19_03405 0.67 -0.3
793,835 - MPMX19_03405 0.67 -1.4
793,835 - MPMX19_03405 0.67 -1.1
793,835 - MPMX19_03405 0.67 -1.1
793,867 + MPMX19_03405 0.69 -0.4
793,867 + MPMX19_03405 0.69 -0.3
793,867 + MPMX19_03405 0.69 -0.2
793,867 + MPMX19_03405 0.69 -0.1
793,867 + MPMX19_03405 0.69 -1.0
793,867 + MPMX19_03405 0.69 +1.1
793,868 - MPMX19_03405 0.69 +0.7
793,868 - MPMX19_03405 0.69 +0.7
793,868 - MPMX19_03405 0.69 -0.7
793,868 - MPMX19_03405 0.69 -0.1
793,868 - MPMX19_03405 0.69 -0.3
793,987 + MPMX19_03405 0.78 -0.2
793,987 + MPMX19_03405 0.78 -0.9
793,987 + MPMX19_03405 0.78 -0.3
793,987 + MPMX19_03405 0.78 -0.2
793,987 + MPMX19_03405 0.78 +0.7
793,987 + MPMX19_03405 0.78 -0.3
793,987 + MPMX19_03405 0.78 +0.3
793,987 + MPMX19_03405 0.78 -1.1
793,987 + MPMX19_03405 0.78 -0.3
793,987 + MPMX19_03405 0.78 -1.0
793,987 + MPMX19_03405 0.78 -0.5
793,987 + MPMX19_03405 0.78 -2.1
793,987 + MPMX19_03405 0.78 +0.0
793,988 - MPMX19_03405 0.78 -0.9
793,988 - MPMX19_03405 0.78 -1.3
793,988 - MPMX19_03405 0.78 +0.6
793,988 - MPMX19_03405 0.78 -0.9
793,988 - MPMX19_03405 0.78 +1.1
793,988 - MPMX19_03405 0.78 -1.7
793,988 - MPMX19_03405 0.78 +0.5
794,095 + MPMX19_03405 0.85 -0.7
794,095 + MPMX19_03405 0.85 -0.3
794,095 + MPMX19_03405 0.85 -0.5
794,095 + MPMX19_03405 0.85 +0.8
794,096 - MPMX19_03405 0.85 -0.7
794,096 - MPMX19_03405 0.85 +0.6
794,096 - MPMX19_03405 0.85 -0.3
794,096 - MPMX19_03405 0.85 +0.6
794,096 - MPMX19_03405 0.85 -1.1
794,422 + +0.4
794,422 + -0.6
794,422 + -0.5
794,422 + -0.4
794,422 + -1.3
794,422 + +0.1
794,422 + -0.2
794,422 + -0.3
794,422 + +0.1
794,422 + -1.6
794,422 + -0.9
794,422 + -2.6
794,422 + -0.2
794,423 - -0.1
794,423 - -1.0
794,423 - +0.4
794,427 + +1.1
794,427 + -1.4
794,427 + -0.1
794,427 + -0.3
794,427 + -1.9
794,427 + -1.5
794,427 + -1.1
794,427 + +0.1
794,427 + -0.4
794,427 + -0.7
794,427 + -0.3
794,427 + -2.7
794,427 + -1.3
794,427 + +2.7
794,427 + -0.3
794,427 + -0.3
794,427 + -0.8
794,427 + -0.1
794,427 + -0.9
794,427 + +1.3
794,427 + +0.3
794,428 - -0.6
794,428 - -0.6
794,428 - -0.5
794,428 - +3.3
794,428 - -0.4
794,428 - +0.1
794,428 - -0.9
794,428 - -0.3
794,428 - +0.1
794,428 - -0.2
794,428 - -0.4
794,428 - -0.0
794,428 - +0.3
794,428 - -1.9
794,428 - +0.1
794,428 - -0.5
794,428 - +1.4
795,121 + MPMX19_03406 0.68 -1.0
795,247 + MPMX19_03406 0.81 -0.5
795,247 + MPMX19_03406 0.81 -1.9
795,247 + MPMX19_03406 0.81 -0.8
795,247 + MPMX19_03406 0.81 -0.8
795,247 + MPMX19_03406 0.81 -0.6
795,247 + MPMX19_03406 0.81 -0.7
795,248 - MPMX19_03406 0.81 +1.1
795,248 - MPMX19_03406 0.81 -0.3
795,248 - MPMX19_03406 0.81 -0.5
795,248 - MPMX19_03406 0.81 +0.7
795,248 - MPMX19_03406 0.81 -1.3

Or see this region's nucleotide sequence