Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03387

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03386 and MPMX19_03387 are separated by 124 nucleotidesMPMX19_03387 and MPMX19_03388 overlap by 4 nucleotidesMPMX19_03388 and MPMX19_03389 overlap by 13 nucleotides MPMX19_03386: MPMX19_03386 - HTH-type transcriptional activator RhaR, at 770,335 to 771,210 _03386 MPMX19_03387: MPMX19_03387 - hypothetical protein, at 771,335 to 774,394 _03387 MPMX19_03388: MPMX19_03388 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 774,391 to 775,227 _03388 MPMX19_03389: MPMX19_03389 - Carbon monoxide dehydrogenase small chain, at 775,215 to 775,745 _03389 Position (kb) 771 772 773 774 775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 770.488 kb on + strand, within MPMX19_03386at 770.488 kb on + strand, within MPMX19_03386at 770.489 kb on - strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.542 kb on + strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.543 kb on - strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.587 kb on + strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.588 kb on - strand, within MPMX19_03386at 770.683 kb on + strand, within MPMX19_03386at 770.683 kb on + strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.684 kb on - strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.725 kb on + strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.726 kb on - strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.827 kb on + strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.828 kb on - strand, within MPMX19_03386at 770.983 kb on - strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.995 kb on + strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 770.996 kb on - strand, within MPMX19_03386at 771.145 kb on + strandat 771.145 kb on + strandat 771.225 kb on + strandat 771.242 kb on + strandat 771.243 kb on - strandat 771.243 kb on - strandat 771.256 kb on + strandat 771.256 kb on + strandat 771.261 kb on + strandat 771.261 kb on + strandat 771.281 kb on + strandat 771.474 kb on - strandat 771.474 kb on - strandat 771.740 kb on + strand, within MPMX19_03387at 771.740 kb on + strand, within MPMX19_03387at 771.741 kb on - strand, within MPMX19_03387at 771.741 kb on - strand, within MPMX19_03387at 771.741 kb on - strand, within MPMX19_03387at 771.779 kb on + strand, within MPMX19_03387at 771.779 kb on + strand, within MPMX19_03387at 771.947 kb on + strand, within MPMX19_03387at 771.948 kb on - strand, within MPMX19_03387at 771.998 kb on + strand, within MPMX19_03387at 771.999 kb on - strand, within MPMX19_03387at 771.999 kb on - strand, within MPMX19_03387at 771.999 kb on - strand, within MPMX19_03387at 772.019 kb on + strand, within MPMX19_03387at 772.019 kb on + strand, within MPMX19_03387at 772.019 kb on + strand, within MPMX19_03387at 772.020 kb on - strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.163 kb on + strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.164 kb on - strand, within MPMX19_03387at 772.349 kb on + strand, within MPMX19_03387at 772.349 kb on + strand, within MPMX19_03387at 772.349 kb on + strand, within MPMX19_03387at 772.350 kb on - strand, within MPMX19_03387at 772.350 kb on - strand, within MPMX19_03387at 772.379 kb on + strand, within MPMX19_03387at 772.409 kb on + strand, within MPMX19_03387at 772.409 kb on + strand, within MPMX19_03387at 772.409 kb on + strand, within MPMX19_03387at 772.410 kb on - strand, within MPMX19_03387at 772.502 kb on + strand, within MPMX19_03387at 772.502 kb on + strand, within MPMX19_03387at 772.502 kb on + strand, within MPMX19_03387at 772.502 kb on + strand, within MPMX19_03387at 772.503 kb on - strand, within MPMX19_03387at 772.503 kb on - strand, within MPMX19_03387at 772.503 kb on - strand, within MPMX19_03387at 772.503 kb on - strand, within MPMX19_03387at 772.505 kb on + strand, within MPMX19_03387at 772.506 kb on - strand, within MPMX19_03387at 772.506 kb on - strand, within MPMX19_03387at 772.506 kb on - strand, within MPMX19_03387at 772.605 kb on - strand, within MPMX19_03387at 772.644 kb on - strand, within MPMX19_03387at 772.734 kb on - strand, within MPMX19_03387at 772.745 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.784 kb on + strand, within MPMX19_03387at 772.785 kb on - strand, within MPMX19_03387at 772.785 kb on - strand, within MPMX19_03387at 772.785 kb on - strand, within MPMX19_03387at 772.785 kb on - strand, within MPMX19_03387at 773.039 kb on + strand, within MPMX19_03387at 773.039 kb on + strand, within MPMX19_03387at 773.039 kb on + strand, within MPMX19_03387at 773.039 kb on + strand, within MPMX19_03387at 773.040 kb on - strand, within MPMX19_03387at 773.355 kb on - strand, within MPMX19_03387at 773.355 kb on - strand, within MPMX19_03387at 773.355 kb on - strand, within MPMX19_03387at 773.424 kb on - strand, within MPMX19_03387at 773.424 kb on - strand, within MPMX19_03387at 773.424 kb on - strand, within MPMX19_03387at 773.528 kb on + strand, within MPMX19_03387at 773.528 kb on + strand, within MPMX19_03387at 773.528 kb on + strand, within MPMX19_03387at 773.528 kb on + strand, within MPMX19_03387at 773.528 kb on + strand, within MPMX19_03387at 773.528 kb on + strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.529 kb on - strand, within MPMX19_03387at 773.534 kb on + strand, within MPMX19_03387at 773.534 kb on + strand, within MPMX19_03387at 773.534 kb on + strand, within MPMX19_03387at 773.534 kb on + strand, within MPMX19_03387at 773.534 kb on + strand, within MPMX19_03387at 773.534 kb on + strand, within MPMX19_03387at 773.535 kb on - strand, within MPMX19_03387at 773.535 kb on - strand, within MPMX19_03387at 773.576 kb on + strand, within MPMX19_03387at 773.576 kb on + strand, within MPMX19_03387at 773.576 kb on + strand, within MPMX19_03387at 773.577 kb on - strand, within MPMX19_03387at 773.577 kb on - strand, within MPMX19_03387at 773.751 kb on + strand, within MPMX19_03387at 773.751 kb on + strand, within MPMX19_03387at 773.751 kb on + strand, within MPMX19_03387at 773.751 kb on + strand, within MPMX19_03387at 773.752 kb on - strand, within MPMX19_03387at 773.752 kb on - strand, within MPMX19_03387at 774.065 kb on + strand, within MPMX19_03387at 774.065 kb on + strand, within MPMX19_03387at 774.065 kb on + strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.066 kb on - strand, within MPMX19_03387at 774.206 kb on + strandat 774.206 kb on + strandat 774.207 kb on - strandat 774.207 kb on - strandat 774.213 kb on - strandat 774.213 kb on - strandat 774.213 kb on - strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 774.412 kb on + strandat 775.269 kb on + strand, within MPMX19_03389

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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770,488 + MPMX19_03386 0.17 -1.6
770,488 + MPMX19_03386 0.17 -0.3
770,489 - MPMX19_03386 0.18 -0.7
770,542 + MPMX19_03386 0.24 +0.6
770,542 + MPMX19_03386 0.24 -1.7
770,542 + MPMX19_03386 0.24 +0.1
770,542 + MPMX19_03386 0.24 +1.5
770,542 + MPMX19_03386 0.24 -0.6
770,542 + MPMX19_03386 0.24 -0.4
770,542 + MPMX19_03386 0.24 -1.3
770,542 + MPMX19_03386 0.24 -0.3
770,543 - MPMX19_03386 0.24 +0.4
770,543 - MPMX19_03386 0.24 +0.3
770,543 - MPMX19_03386 0.24 +1.1
770,543 - MPMX19_03386 0.24 -0.4
770,543 - MPMX19_03386 0.24 +1.3
770,543 - MPMX19_03386 0.24 +1.0
770,587 + MPMX19_03386 0.29 -0.9
770,587 + MPMX19_03386 0.29 +0.4
770,587 + MPMX19_03386 0.29 +0.7
770,587 + MPMX19_03386 0.29 -0.9
770,587 + MPMX19_03386 0.29 -0.4
770,587 + MPMX19_03386 0.29 -0.9
770,587 + MPMX19_03386 0.29 +1.1
770,587 + MPMX19_03386 0.29 -1.4
770,588 - MPMX19_03386 0.29 -1.1
770,588 - MPMX19_03386 0.29 -2.9
770,588 - MPMX19_03386 0.29 -0.9
770,588 - MPMX19_03386 0.29 +0.0
770,588 - MPMX19_03386 0.29 -0.6
770,588 - MPMX19_03386 0.29 +0.6
770,588 - MPMX19_03386 0.29 +0.4
770,683 + MPMX19_03386 0.40 -1.2
770,683 + MPMX19_03386 0.40 -0.3
770,684 - MPMX19_03386 0.40 -0.4
770,684 - MPMX19_03386 0.40 +1.0
770,684 - MPMX19_03386 0.40 -0.3
770,684 - MPMX19_03386 0.40 +0.6
770,684 - MPMX19_03386 0.40 -0.6
770,684 - MPMX19_03386 0.40 -0.7
770,725 + MPMX19_03386 0.45 -1.7
770,725 + MPMX19_03386 0.45 -0.9
770,725 + MPMX19_03386 0.45 -0.6
770,726 - MPMX19_03386 0.45 -1.4
770,726 - MPMX19_03386 0.45 -0.9
770,726 - MPMX19_03386 0.45 +0.4
770,726 - MPMX19_03386 0.45 +0.1
770,827 + MPMX19_03386 0.56 +1.2
770,827 + MPMX19_03386 0.56 +0.9
770,827 + MPMX19_03386 0.56 -0.7
770,827 + MPMX19_03386 0.56 -0.3
770,827 + MPMX19_03386 0.56 +0.1
770,828 - MPMX19_03386 0.56 -1.3
770,828 - MPMX19_03386 0.56 +0.1
770,828 - MPMX19_03386 0.56 +0.1
770,828 - MPMX19_03386 0.56 -0.1
770,983 - MPMX19_03386 0.74 +0.1
770,995 + MPMX19_03386 0.75 +0.5
770,995 + MPMX19_03386 0.75 -0.3
770,995 + MPMX19_03386 0.75 +0.7
770,996 - MPMX19_03386 0.75 -0.6
770,996 - MPMX19_03386 0.75 -1.3
770,996 - MPMX19_03386 0.75 -0.1
771,145 + +0.5
771,145 + -1.1
771,225 + +0.1
771,242 + +1.0
771,243 - -0.0
771,243 - -0.1
771,256 + -1.0
771,256 + -1.7
771,261 + -0.4
771,261 + -0.6
771,281 + -2.4
771,474 - -1.8
771,474 - -0.3
771,740 + MPMX19_03387 0.13 -0.7
771,740 + MPMX19_03387 0.13 +0.8
771,741 - MPMX19_03387 0.13 +0.7
771,741 - MPMX19_03387 0.13 +1.9
771,741 - MPMX19_03387 0.13 -0.9
771,779 + MPMX19_03387 0.15 -0.9
771,779 + MPMX19_03387 0.15 +1.1
771,947 + MPMX19_03387 0.20 -1.3
771,948 - MPMX19_03387 0.20 -0.7
771,998 + MPMX19_03387 0.22 +0.3
771,999 - MPMX19_03387 0.22 -0.7
771,999 - MPMX19_03387 0.22 -0.8
771,999 - MPMX19_03387 0.22 -1.0
772,019 + MPMX19_03387 0.22 +0.6
772,019 + MPMX19_03387 0.22 -0.2
772,019 + MPMX19_03387 0.22 +0.1
772,020 - MPMX19_03387 0.22 -1.4
772,163 + MPMX19_03387 0.27 -0.6
772,163 + MPMX19_03387 0.27 +0.4
772,163 + MPMX19_03387 0.27 +0.0
772,163 + MPMX19_03387 0.27 +0.6
772,163 + MPMX19_03387 0.27 +0.6
772,163 + MPMX19_03387 0.27 -0.4
772,163 + MPMX19_03387 0.27 -0.3
772,163 + MPMX19_03387 0.27 -0.9
772,164 - MPMX19_03387 0.27 -0.6
772,164 - MPMX19_03387 0.27 -0.7
772,164 - MPMX19_03387 0.27 +0.6
772,164 - MPMX19_03387 0.27 +0.7
772,164 - MPMX19_03387 0.27 +0.4
772,164 - MPMX19_03387 0.27 +0.3
772,164 - MPMX19_03387 0.27 +0.1
772,164 - MPMX19_03387 0.27 -1.6
772,349 + MPMX19_03387 0.33 +0.9
772,349 + MPMX19_03387 0.33 +0.7
772,349 + MPMX19_03387 0.33 -1.3
772,350 - MPMX19_03387 0.33 -0.0
772,350 - MPMX19_03387 0.33 +0.8
772,379 + MPMX19_03387 0.34 +0.2
772,409 + MPMX19_03387 0.35 -0.1
772,409 + MPMX19_03387 0.35 -0.2
772,409 + MPMX19_03387 0.35 +0.6
772,410 - MPMX19_03387 0.35 +0.6
772,502 + MPMX19_03387 0.38 -0.5
772,502 + MPMX19_03387 0.38 +0.6
772,502 + MPMX19_03387 0.38 +1.7
772,502 + MPMX19_03387 0.38 +0.9
772,503 - MPMX19_03387 0.38 +0.9
772,503 - MPMX19_03387 0.38 -0.9
772,503 - MPMX19_03387 0.38 +1.2
772,503 - MPMX19_03387 0.38 -0.9
772,505 + MPMX19_03387 0.38 +0.8
772,506 - MPMX19_03387 0.38 +0.4
772,506 - MPMX19_03387 0.38 +1.5
772,506 - MPMX19_03387 0.38 +1.1
772,605 - MPMX19_03387 0.42 -1.0
772,644 - MPMX19_03387 0.43 -1.3
772,734 - MPMX19_03387 0.46 +0.1
772,745 + MPMX19_03387 0.46 -0.7
772,784 + MPMX19_03387 0.47 +0.1
772,784 + MPMX19_03387 0.47 -1.5
772,784 + MPMX19_03387 0.47 -0.7
772,784 + MPMX19_03387 0.47 -1.2
772,784 + MPMX19_03387 0.47 +0.1
772,784 + MPMX19_03387 0.47 +0.6
772,784 + MPMX19_03387 0.47 -1.8
772,785 - MPMX19_03387 0.47 +0.7
772,785 - MPMX19_03387 0.47 +0.3
772,785 - MPMX19_03387 0.47 -1.7
772,785 - MPMX19_03387 0.47 -0.3
773,039 + MPMX19_03387 0.56 -0.4
773,039 + MPMX19_03387 0.56 -0.8
773,039 + MPMX19_03387 0.56 -1.0
773,039 + MPMX19_03387 0.56 +0.3
773,040 - MPMX19_03387 0.56 +0.7
773,355 - MPMX19_03387 0.66 +0.0
773,355 - MPMX19_03387 0.66 +0.4
773,355 - MPMX19_03387 0.66 +0.7
773,424 - MPMX19_03387 0.68 +0.2
773,424 - MPMX19_03387 0.68 +1.5
773,424 - MPMX19_03387 0.68 +0.4
773,528 + MPMX19_03387 0.72 -0.6
773,528 + MPMX19_03387 0.72 -1.3
773,528 + MPMX19_03387 0.72 -0.0
773,528 + MPMX19_03387 0.72 -1.1
773,528 + MPMX19_03387 0.72 -2.0
773,528 + MPMX19_03387 0.72 +0.4
773,529 - MPMX19_03387 0.72 +0.4
773,529 - MPMX19_03387 0.72 -0.0
773,529 - MPMX19_03387 0.72 -1.0
773,529 - MPMX19_03387 0.72 -0.5
773,529 - MPMX19_03387 0.72 +0.7
773,529 - MPMX19_03387 0.72 +0.1
773,529 - MPMX19_03387 0.72 +1.0
773,529 - MPMX19_03387 0.72 -0.1
773,529 - MPMX19_03387 0.72 +0.4
773,534 + MPMX19_03387 0.72 -0.9
773,534 + MPMX19_03387 0.72 -0.3
773,534 + MPMX19_03387 0.72 -1.4
773,534 + MPMX19_03387 0.72 -0.3
773,534 + MPMX19_03387 0.72 +0.1
773,534 + MPMX19_03387 0.72 -0.7
773,535 - MPMX19_03387 0.72 -0.0
773,535 - MPMX19_03387 0.72 -2.2
773,576 + MPMX19_03387 0.73 -0.6
773,576 + MPMX19_03387 0.73 -1.9
773,576 + MPMX19_03387 0.73 +0.0
773,577 - MPMX19_03387 0.73 -1.1
773,577 - MPMX19_03387 0.73 -0.2
773,751 + MPMX19_03387 0.79 -0.0
773,751 + MPMX19_03387 0.79 -1.6
773,751 + MPMX19_03387 0.79 -0.2
773,751 + MPMX19_03387 0.79 +0.6
773,752 - MPMX19_03387 0.79 +0.4
773,752 - MPMX19_03387 0.79 -1.6
774,065 + MPMX19_03387 0.89 -0.8
774,065 + MPMX19_03387 0.89 +0.7
774,065 + MPMX19_03387 0.89 -0.7
774,066 - MPMX19_03387 0.89 +0.3
774,066 - MPMX19_03387 0.89 -0.5
774,066 - MPMX19_03387 0.89 -0.5
774,066 - MPMX19_03387 0.89 -0.4
774,066 - MPMX19_03387 0.89 -0.4
774,066 - MPMX19_03387 0.89 -0.4
774,066 - MPMX19_03387 0.89 -2.1
774,066 - MPMX19_03387 0.89 -1.7
774,066 - MPMX19_03387 0.89 -2.1
774,066 - MPMX19_03387 0.89 -0.6
774,206 + -2.2
774,206 + +0.0
774,207 - -0.9
774,207 - -0.8
774,213 - +1.4
774,213 - -0.2
774,213 - -0.4
774,412 + -0.9
774,412 + +2.5
774,412 + +0.7
774,412 + +0.0
774,412 + +1.2
774,412 + -0.9
775,269 + MPMX19_03389 0.10 -0.8

Or see this region's nucleotide sequence