Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03374

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03373 and MPMX19_03374 overlap by 4 nucleotidesMPMX19_03374 and MPMX19_03375 overlap by 4 nucleotides MPMX19_03373: MPMX19_03373 - Type I secretion system membrane fusion protein PrsE, at 750,057 to 751,460 _03373 MPMX19_03374: MPMX19_03374 - Alpha-hemolysin translocation ATP-binding protein HlyB, at 751,457 to 753,139 _03374 MPMX19_03375: MPMX19_03375 - Outer membrane protein TolC, at 753,136 to 754,560 _03375 Position (kb) 751 752 753 754Strain fitness (log2 ratio) -2 -1 0 1at 750.533 kb on - strand, within MPMX19_03373at 750.608 kb on - strand, within MPMX19_03373at 751.189 kb on + strand, within MPMX19_03373at 751.189 kb on + strand, within MPMX19_03373at 751.189 kb on + strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.386 kb on - strandat 751.386 kb on - strandat 751.906 kb on - strand, within MPMX19_03374at 751.906 kb on - strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.154 kb on + strand, within MPMX19_03374at 752.155 kb on - strand, within MPMX19_03374at 752.155 kb on - strand, within MPMX19_03374at 752.155 kb on - strand, within MPMX19_03374at 752.997 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.021 kb on + strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.022 kb on - strandat 753.713 kb on + strand, within MPMX19_03375at 753.713 kb on + strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.732 kb on - strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.918 kb on - strand, within MPMX19_03375at 753.918 kb on - strand, within MPMX19_03375at 753.918 kb on - strand, within MPMX19_03375at 754.018 kb on - strand, within MPMX19_03375at 754.028 kb on + strand, within MPMX19_03375at 754.133 kb on + strand, within MPMX19_03375at 754.134 kb on - strand, within MPMX19_03375at 754.134 kb on - strand, within MPMX19_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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750,533 - MPMX19_03373 0.34 -2.0
750,608 - MPMX19_03373 0.39 -0.6
751,189 + MPMX19_03373 0.81 +0.1
751,189 + MPMX19_03373 0.81 +0.0
751,189 + MPMX19_03373 0.81 -0.2
751,190 - MPMX19_03373 0.81 +0.0
751,190 - MPMX19_03373 0.81 -1.2
751,190 - MPMX19_03373 0.81 +0.5
751,190 - MPMX19_03373 0.81 -0.4
751,190 - MPMX19_03373 0.81 +0.7
751,190 - MPMX19_03373 0.81 +0.7
751,190 - MPMX19_03373 0.81 +0.4
751,386 - -0.6
751,386 - +0.3
751,906 - MPMX19_03374 0.27 -0.7
751,906 - MPMX19_03374 0.27 -0.5
752,121 + MPMX19_03374 0.39 +0.7
752,121 + MPMX19_03374 0.39 -1.9
752,121 + MPMX19_03374 0.39 -0.5
752,121 + MPMX19_03374 0.39 +0.3
752,121 + MPMX19_03374 0.39 +0.6
752,121 + MPMX19_03374 0.39 -1.4
752,121 + MPMX19_03374 0.39 -0.4
752,121 + MPMX19_03374 0.39 +0.2
752,121 + MPMX19_03374 0.39 -0.0
752,121 + MPMX19_03374 0.39 -0.2
752,122 - MPMX19_03374 0.40 -0.7
752,122 - MPMX19_03374 0.40 -1.1
752,122 - MPMX19_03374 0.40 +1.4
752,122 - MPMX19_03374 0.40 +0.4
752,122 - MPMX19_03374 0.40 +0.3
752,122 - MPMX19_03374 0.40 +0.5
752,122 - MPMX19_03374 0.40 -0.9
752,122 - MPMX19_03374 0.40 -1.0
752,122 - MPMX19_03374 0.40 -1.1
752,122 - MPMX19_03374 0.40 -0.0
752,122 - MPMX19_03374 0.40 -2.3
752,154 + MPMX19_03374 0.41 +0.7
752,155 - MPMX19_03374 0.41 -2.3
752,155 - MPMX19_03374 0.41 -0.7
752,155 - MPMX19_03374 0.41 -0.3
752,997 + +0.1
753,021 + +0.1
753,021 + -1.0
753,021 + -0.1
753,021 + +0.5
753,021 + -0.1
753,021 + -0.4
753,021 + +0.4
753,021 + -0.5
753,021 + -0.8
753,021 + -0.3
753,021 + -1.1
753,021 + +1.4
753,022 - -0.6
753,022 - +0.1
753,022 - -0.2
753,022 - -0.2
753,022 - -0.1
753,022 - -0.0
753,022 - +0.3
753,022 - -0.0
753,713 + MPMX19_03375 0.40 +0.7
753,713 + MPMX19_03375 0.40 -0.6
753,714 - MPMX19_03375 0.41 -2.1
753,714 - MPMX19_03375 0.41 +0.9
753,714 - MPMX19_03375 0.41 +0.3
753,714 - MPMX19_03375 0.41 +1.0
753,732 - MPMX19_03375 0.42 +0.1
753,917 + MPMX19_03375 0.55 +0.3
753,917 + MPMX19_03375 0.55 +1.2
753,917 + MPMX19_03375 0.55 +0.4
753,917 + MPMX19_03375 0.55 -0.4
753,918 - MPMX19_03375 0.55 +0.1
753,918 - MPMX19_03375 0.55 +0.1
753,918 - MPMX19_03375 0.55 -0.1
754,018 - MPMX19_03375 0.62 -0.8
754,028 + MPMX19_03375 0.63 -0.8
754,133 + MPMX19_03375 0.70 +0.6
754,134 - MPMX19_03375 0.70 +1.3
754,134 - MPMX19_03375 0.70 -1.1

Or see this region's nucleotide sequence