Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03373 and MPMX19_03374 overlap by 4 nucleotides MPMX19_03374 and MPMX19_03375 overlap by 4 nucleotides
MPMX19_03373: MPMX19_03373 - Type I secretion system membrane fusion protein PrsE, at 750,057 to 751,460
_03373
MPMX19_03374: MPMX19_03374 - Alpha-hemolysin translocation ATP-binding protein HlyB, at 751,457 to 753,139
_03374
MPMX19_03375: MPMX19_03375 - Outer membrane protein TolC, at 753,136 to 754,560
_03375
Position (kb)
751
752
753
754 Strain fitness (log2 ratio)
-2
-1
0
1 at 750.533 kb on - strand, within MPMX19_03373 at 750.608 kb on - strand, within MPMX19_03373 at 751.189 kb on + strand, within MPMX19_03373 at 751.189 kb on + strand, within MPMX19_03373 at 751.189 kb on + strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.190 kb on - strand, within MPMX19_03373 at 751.386 kb on - strand at 751.386 kb on - strand at 751.906 kb on - strand, within MPMX19_03374 at 751.906 kb on - strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.121 kb on + strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.122 kb on - strand, within MPMX19_03374 at 752.154 kb on + strand, within MPMX19_03374 at 752.155 kb on - strand, within MPMX19_03374 at 752.155 kb on - strand, within MPMX19_03374 at 752.155 kb on - strand, within MPMX19_03374 at 752.997 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.713 kb on + strand, within MPMX19_03375 at 753.713 kb on + strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.732 kb on - strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 754.018 kb on - strand, within MPMX19_03375 at 754.028 kb on + strand, within MPMX19_03375 at 754.133 kb on + strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 750,533 - MPMX19_03373 0.34 -2.0 750,608 - MPMX19_03373 0.39 -0.6 751,189 + MPMX19_03373 0.81 +0.1 751,189 + MPMX19_03373 0.81 +0.0 751,189 + MPMX19_03373 0.81 -0.2 751,190 - MPMX19_03373 0.81 +0.0 751,190 - MPMX19_03373 0.81 -1.2 751,190 - MPMX19_03373 0.81 +0.5 751,190 - MPMX19_03373 0.81 -0.4 751,190 - MPMX19_03373 0.81 +0.7 751,190 - MPMX19_03373 0.81 +0.7 751,190 - MPMX19_03373 0.81 +0.4 751,386 - -0.6 751,386 - +0.3 751,906 - MPMX19_03374 0.27 -0.7 751,906 - MPMX19_03374 0.27 -0.5 752,121 + MPMX19_03374 0.39 +0.7 752,121 + MPMX19_03374 0.39 -1.9 752,121 + MPMX19_03374 0.39 -0.5 752,121 + MPMX19_03374 0.39 +0.3 752,121 + MPMX19_03374 0.39 +0.6 752,121 + MPMX19_03374 0.39 -1.4 752,121 + MPMX19_03374 0.39 -0.4 752,121 + MPMX19_03374 0.39 +0.2 752,121 + MPMX19_03374 0.39 -0.0 752,121 + MPMX19_03374 0.39 -0.2 752,122 - MPMX19_03374 0.40 -0.7 752,122 - MPMX19_03374 0.40 -1.1 752,122 - MPMX19_03374 0.40 +1.4 752,122 - MPMX19_03374 0.40 +0.4 752,122 - MPMX19_03374 0.40 +0.3 752,122 - MPMX19_03374 0.40 +0.5 752,122 - MPMX19_03374 0.40 -0.9 752,122 - MPMX19_03374 0.40 -1.0 752,122 - MPMX19_03374 0.40 -1.1 752,122 - MPMX19_03374 0.40 -0.0 752,122 - MPMX19_03374 0.40 -2.3 752,154 + MPMX19_03374 0.41 +0.7 752,155 - MPMX19_03374 0.41 -2.3 752,155 - MPMX19_03374 0.41 -0.7 752,155 - MPMX19_03374 0.41 -0.3 752,997 + +0.1 753,021 + +0.1 753,021 + -1.0 753,021 + -0.1 753,021 + +0.5 753,021 + -0.1 753,021 + -0.4 753,021 + +0.4 753,021 + -0.5 753,021 + -0.8 753,021 + -0.3 753,021 + -1.1 753,021 + +1.4 753,022 - -0.6 753,022 - +0.1 753,022 - -0.2 753,022 - -0.2 753,022 - -0.1 753,022 - -0.0 753,022 - +0.3 753,022 - -0.0 753,713 + MPMX19_03375 0.40 +0.7 753,713 + MPMX19_03375 0.40 -0.6 753,714 - MPMX19_03375 0.41 -2.1 753,714 - MPMX19_03375 0.41 +0.9 753,714 - MPMX19_03375 0.41 +0.3 753,714 - MPMX19_03375 0.41 +1.0 753,732 - MPMX19_03375 0.42 +0.1 753,917 + MPMX19_03375 0.55 +0.3 753,917 + MPMX19_03375 0.55 +1.2 753,917 + MPMX19_03375 0.55 +0.4 753,917 + MPMX19_03375 0.55 -0.4 753,918 - MPMX19_03375 0.55 +0.1 753,918 - MPMX19_03375 0.55 +0.1 753,918 - MPMX19_03375 0.55 -0.1 754,018 - MPMX19_03375 0.62 -0.8 754,028 + MPMX19_03375 0.63 -0.8 754,133 + MPMX19_03375 0.70 +0.6 754,134 - MPMX19_03375 0.70 +1.3 754,134 - MPMX19_03375 0.70 -1.1
Or see this region's nucleotide sequence