Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03373

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03372 and MPMX19_03373 are separated by 46 nucleotidesMPMX19_03373 and MPMX19_03374 overlap by 4 nucleotides MPMX19_03372: MPMX19_03372 - hypothetical protein, at 746,921 to 750,010 _03372 MPMX19_03373: MPMX19_03373 - Type I secretion system membrane fusion protein PrsE, at 750,057 to 751,460 _03373 MPMX19_03374: MPMX19_03374 - Alpha-hemolysin translocation ATP-binding protein HlyB, at 751,457 to 753,139 _03374 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 749.085 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.331 kb on + strand, within MPMX19_03372at 749.332 kb on - strand, within MPMX19_03372at 749.332 kb on - strand, within MPMX19_03372at 749.332 kb on - strand, within MPMX19_03372at 749.332 kb on - strand, within MPMX19_03372at 749.332 kb on - strand, within MPMX19_03372at 749.332 kb on - strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.463 kb on + strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.464 kb on - strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.589 kb on + strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 749.590 kb on - strand, within MPMX19_03372at 750.033 kb on + strandat 750.033 kb on + strandat 750.033 kb on + strandat 750.033 kb on + strandat 750.033 kb on + strandat 750.033 kb on + strandat 750.033 kb on + strandat 750.033 kb on + strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.034 kb on - strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.109 kb on + strandat 750.110 kb on - strandat 750.110 kb on - strandat 750.110 kb on - strandat 750.110 kb on - strandat 750.175 kb on + strandat 750.175 kb on + strandat 750.175 kb on + strandat 750.175 kb on + strandat 750.176 kb on - strandat 750.176 kb on - strandat 750.191 kb on - strandat 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.229 kb on + strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.230 kb on - strand, within MPMX19_03373at 750.232 kb on + strand, within MPMX19_03373at 750.232 kb on + strand, within MPMX19_03373at 750.232 kb on + strand, within MPMX19_03373at 750.232 kb on + strand, within MPMX19_03373at 750.233 kb on - strand, within MPMX19_03373at 750.233 kb on - strand, within MPMX19_03373at 750.293 kb on + strand, within MPMX19_03373at 750.293 kb on + strand, within MPMX19_03373at 750.293 kb on + strand, within MPMX19_03373at 750.358 kb on + strand, within MPMX19_03373at 750.358 kb on + strand, within MPMX19_03373at 750.359 kb on - strand, within MPMX19_03373at 750.359 kb on - strand, within MPMX19_03373at 750.359 kb on - strand, within MPMX19_03373at 750.533 kb on - strand, within MPMX19_03373at 750.608 kb on - strand, within MPMX19_03373at 751.189 kb on + strand, within MPMX19_03373at 751.189 kb on + strand, within MPMX19_03373at 751.189 kb on + strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.190 kb on - strand, within MPMX19_03373at 751.386 kb on - strandat 751.386 kb on - strandat 751.906 kb on - strand, within MPMX19_03374at 751.906 kb on - strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.121 kb on + strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.122 kb on - strand, within MPMX19_03374at 752.154 kb on + strand, within MPMX19_03374at 752.155 kb on - strand, within MPMX19_03374at 752.155 kb on - strand, within MPMX19_03374at 752.155 kb on - strand, within MPMX19_03374

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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749,085 + MPMX19_03372 0.70 +0.0
749,331 + MPMX19_03372 0.78 -1.6
749,331 + MPMX19_03372 0.78 -0.1
749,331 + MPMX19_03372 0.78 -0.8
749,331 + MPMX19_03372 0.78 +0.9
749,331 + MPMX19_03372 0.78 -0.9
749,331 + MPMX19_03372 0.78 -0.7
749,331 + MPMX19_03372 0.78 +0.9
749,332 - MPMX19_03372 0.78 +0.0
749,332 - MPMX19_03372 0.78 -2.2
749,332 - MPMX19_03372 0.78 -1.6
749,332 - MPMX19_03372 0.78 -1.1
749,332 - MPMX19_03372 0.78 -0.7
749,332 - MPMX19_03372 0.78 -0.7
749,463 + MPMX19_03372 0.82 +2.1
749,463 + MPMX19_03372 0.82 -0.3
749,463 + MPMX19_03372 0.82 -0.4
749,463 + MPMX19_03372 0.82 +0.3
749,463 + MPMX19_03372 0.82 +0.3
749,463 + MPMX19_03372 0.82 -3.0
749,463 + MPMX19_03372 0.82 -1.3
749,463 + MPMX19_03372 0.82 -0.4
749,463 + MPMX19_03372 0.82 -0.1
749,463 + MPMX19_03372 0.82 -0.6
749,463 + MPMX19_03372 0.82 -0.1
749,463 + MPMX19_03372 0.82 +0.5
749,463 + MPMX19_03372 0.82 -2.3
749,463 + MPMX19_03372 0.82 -0.2
749,463 + MPMX19_03372 0.82 +1.0
749,463 + MPMX19_03372 0.82 +0.6
749,464 - MPMX19_03372 0.82 +0.1
749,464 - MPMX19_03372 0.82 +0.4
749,464 - MPMX19_03372 0.82 -0.3
749,464 - MPMX19_03372 0.82 +0.1
749,464 - MPMX19_03372 0.82 +0.4
749,464 - MPMX19_03372 0.82 +0.0
749,464 - MPMX19_03372 0.82 +0.0
749,464 - MPMX19_03372 0.82 -0.3
749,464 - MPMX19_03372 0.82 -0.3
749,464 - MPMX19_03372 0.82 +0.5
749,464 - MPMX19_03372 0.82 +0.0
749,464 - MPMX19_03372 0.82 -1.9
749,464 - MPMX19_03372 0.82 -0.2
749,589 + MPMX19_03372 0.86 -0.0
749,589 + MPMX19_03372 0.86 +0.2
749,589 + MPMX19_03372 0.86 -0.3
749,589 + MPMX19_03372 0.86 -0.4
749,589 + MPMX19_03372 0.86 +1.5
749,589 + MPMX19_03372 0.86 -0.2
749,589 + MPMX19_03372 0.86 -1.0
749,589 + MPMX19_03372 0.86 +1.1
749,589 + MPMX19_03372 0.86 -0.3
749,589 + MPMX19_03372 0.86 +0.3
749,589 + MPMX19_03372 0.86 -1.9
749,589 + MPMX19_03372 0.86 -0.6
749,589 + MPMX19_03372 0.86 +0.7
749,589 + MPMX19_03372 0.86 +0.5
749,589 + MPMX19_03372 0.86 +0.4
749,590 - MPMX19_03372 0.86 -0.2
749,590 - MPMX19_03372 0.86 +0.7
749,590 - MPMX19_03372 0.86 +0.6
749,590 - MPMX19_03372 0.86 -1.0
749,590 - MPMX19_03372 0.86 -0.2
749,590 - MPMX19_03372 0.86 -1.2
749,590 - MPMX19_03372 0.86 +0.2
749,590 - MPMX19_03372 0.86 +0.1
749,590 - MPMX19_03372 0.86 +0.1
749,590 - MPMX19_03372 0.86 -0.2
749,590 - MPMX19_03372 0.86 -2.3
749,590 - MPMX19_03372 0.86 +0.7
749,590 - MPMX19_03372 0.86 +0.1
750,033 + +0.2
750,033 + -1.4
750,033 + +1.0
750,033 + +0.9
750,033 + -0.9
750,033 + -0.9
750,033 + -0.1
750,033 + -0.0
750,034 - +0.2
750,034 - -1.4
750,034 - +0.5
750,034 - -0.4
750,034 - -0.5
750,034 - +0.6
750,034 - +0.5
750,034 - +1.5
750,109 + -1.2
750,109 + -0.1
750,109 + -0.2
750,109 + -1.4
750,109 + +0.4
750,109 + -0.2
750,109 + -0.7
750,109 + -1.1
750,110 - -0.8
750,110 - +0.5
750,110 - -0.2
750,110 - -0.5
750,175 + -1.0
750,175 + +0.1
750,175 + +0.6
750,175 + -1.5
750,176 - +0.1
750,176 - -3.4
750,191 - +0.1
750,229 + MPMX19_03373 0.12 -1.6
750,229 + MPMX19_03373 0.12 -0.3
750,229 + MPMX19_03373 0.12 +0.1
750,229 + MPMX19_03373 0.12 -1.2
750,229 + MPMX19_03373 0.12 -0.4
750,229 + MPMX19_03373 0.12 +0.9
750,229 + MPMX19_03373 0.12 -0.4
750,229 + MPMX19_03373 0.12 -0.1
750,229 + MPMX19_03373 0.12 -0.1
750,229 + MPMX19_03373 0.12 -1.1
750,229 + MPMX19_03373 0.12 -0.1
750,229 + MPMX19_03373 0.12 -0.5
750,229 + MPMX19_03373 0.12 -1.4
750,230 - MPMX19_03373 0.12 -0.6
750,230 - MPMX19_03373 0.12 +0.7
750,230 - MPMX19_03373 0.12 -0.8
750,230 - MPMX19_03373 0.12 -1.0
750,230 - MPMX19_03373 0.12 +0.3
750,230 - MPMX19_03373 0.12 +0.3
750,230 - MPMX19_03373 0.12 -0.9
750,232 + MPMX19_03373 0.12 -0.1
750,232 + MPMX19_03373 0.12 -0.5
750,232 + MPMX19_03373 0.12 -0.7
750,232 + MPMX19_03373 0.12 +1.3
750,233 - MPMX19_03373 0.13 -1.9
750,233 - MPMX19_03373 0.13 +0.9
750,293 + MPMX19_03373 0.17 -0.3
750,293 + MPMX19_03373 0.17 +0.1
750,293 + MPMX19_03373 0.17 -0.2
750,358 + MPMX19_03373 0.21 -1.2
750,358 + MPMX19_03373 0.21 -1.4
750,359 - MPMX19_03373 0.22 +0.1
750,359 - MPMX19_03373 0.22 +1.4
750,359 - MPMX19_03373 0.22 -0.5
750,533 - MPMX19_03373 0.34 -2.0
750,608 - MPMX19_03373 0.39 -0.6
751,189 + MPMX19_03373 0.81 +0.1
751,189 + MPMX19_03373 0.81 +0.0
751,189 + MPMX19_03373 0.81 -0.2
751,190 - MPMX19_03373 0.81 +0.0
751,190 - MPMX19_03373 0.81 -1.2
751,190 - MPMX19_03373 0.81 +0.5
751,190 - MPMX19_03373 0.81 -0.4
751,190 - MPMX19_03373 0.81 +0.7
751,190 - MPMX19_03373 0.81 +0.7
751,190 - MPMX19_03373 0.81 +0.4
751,386 - -0.6
751,386 - +0.3
751,906 - MPMX19_03374 0.27 -0.7
751,906 - MPMX19_03374 0.27 -0.5
752,121 + MPMX19_03374 0.39 +0.7
752,121 + MPMX19_03374 0.39 -1.9
752,121 + MPMX19_03374 0.39 -0.5
752,121 + MPMX19_03374 0.39 +0.3
752,121 + MPMX19_03374 0.39 +0.6
752,121 + MPMX19_03374 0.39 -1.4
752,121 + MPMX19_03374 0.39 -0.4
752,121 + MPMX19_03374 0.39 +0.2
752,121 + MPMX19_03374 0.39 -0.0
752,121 + MPMX19_03374 0.39 -0.2
752,122 - MPMX19_03374 0.40 -0.7
752,122 - MPMX19_03374 0.40 -1.1
752,122 - MPMX19_03374 0.40 +1.4
752,122 - MPMX19_03374 0.40 +0.4
752,122 - MPMX19_03374 0.40 +0.3
752,122 - MPMX19_03374 0.40 +0.5
752,122 - MPMX19_03374 0.40 -0.9
752,122 - MPMX19_03374 0.40 -1.0
752,122 - MPMX19_03374 0.40 -1.1
752,122 - MPMX19_03374 0.40 -0.0
752,122 - MPMX19_03374 0.40 -2.3
752,154 + MPMX19_03374 0.41 +0.7
752,155 - MPMX19_03374 0.41 -2.3
752,155 - MPMX19_03374 0.41 -0.7
752,155 - MPMX19_03374 0.41 -0.3

Or see this region's nucleotide sequence