Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03315

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03313 and MPMX19_03314 are separated by 92 nucleotidesMPMX19_03314 and MPMX19_03315 are separated by 147 nucleotidesMPMX19_03315 and MPMX19_03316 are separated by 39 nucleotides MPMX19_03313: MPMX19_03313 - Ureidoglycolate lyase, at 660,966 to 661,811 _03313 MPMX19_03314: MPMX19_03314 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 661,904 to 662,647 _03314 MPMX19_03315: MPMX19_03315 - Transcriptional regulator KdgR, at 662,795 to 663,610 _03315 MPMX19_03316: MPMX19_03316 - hypothetical protein, at 663,650 to 664,879 _03316 Position (kb) 662 663 664Strain fitness (log2 ratio) -2 -1 0 1at 661.811 kb on + strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.909 kb on + strandat 661.910 kb on - strandat 661.910 kb on - strandat 661.977 kb on + strandat 661.978 kb on - strandat 661.978 kb on - strandat 662.038 kb on + strand, within MPMX19_03314at 662.061 kb on + strand, within MPMX19_03314at 662.062 kb on - strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.205 kb on + strand, within MPMX19_03314at 662.205 kb on + strand, within MPMX19_03314at 662.316 kb on + strand, within MPMX19_03314at 662.317 kb on - strand, within MPMX19_03314at 662.317 kb on - strand, within MPMX19_03314at 662.394 kb on + strand, within MPMX19_03314at 662.394 kb on + strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.821 kb on + strandat 662.822 kb on - strandat 662.892 kb on + strand, within MPMX19_03315at 662.892 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.249 kb on + strand, within MPMX19_03315at 663.249 kb on + strand, within MPMX19_03315at 663.250 kb on - strand, within MPMX19_03315at 663.250 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.387 kb on + strand, within MPMX19_03315at 663.387 kb on + strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.647 kb on + strandat 663.652 kb on - strandat 663.807 kb on + strand, within MPMX19_03316at 663.807 kb on + strand, within MPMX19_03316at 663.808 kb on - strand, within MPMX19_03316at 663.822 kb on + strand, within MPMX19_03316at 663.823 kb on - strand, within MPMX19_03316at 663.939 kb on + strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.940 kb on - strand, within MPMX19_03316at 663.978 kb on + strand, within MPMX19_03316at 663.978 kb on + strand, within MPMX19_03316at 663.978 kb on + strand, within MPMX19_03316at 663.979 kb on - strand, within MPMX19_03316at 663.979 kb on - strand, within MPMX19_03316at 663.979 kb on - strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.101 kb on + strand, within MPMX19_03316at 664.102 kb on - strand, within MPMX19_03316at 664.203 kb on + strand, within MPMX19_03316at 664.204 kb on - strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.218 kb on + strand, within MPMX19_03316at 664.219 kb on - strand, within MPMX19_03316at 664.546 kb on - strand, within MPMX19_03316

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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661,811 + -0.5
661,811 + -0.9
661,811 + +0.4
661,812 - -0.2
661,812 - -0.7
661,812 - -0.9
661,812 - -0.0
661,909 + -1.4
661,910 - -1.6
661,910 - -1.3
661,977 + -0.1
661,978 - -1.1
661,978 - +0.8
662,038 + MPMX19_03314 0.18 +0.1
662,061 + MPMX19_03314 0.21 -0.1
662,062 - MPMX19_03314 0.21 +0.3
662,151 + MPMX19_03314 0.33 +0.5
662,151 + MPMX19_03314 0.33 -0.4
662,151 + MPMX19_03314 0.33 -2.5
662,151 + MPMX19_03314 0.33 +1.1
662,151 + MPMX19_03314 0.33 +0.1
662,152 - MPMX19_03314 0.33 +1.1
662,152 - MPMX19_03314 0.33 +0.3
662,152 - MPMX19_03314 0.33 -1.1
662,205 + MPMX19_03314 0.40 +0.3
662,205 + MPMX19_03314 0.40 -1.4
662,316 + MPMX19_03314 0.55 -0.3
662,317 - MPMX19_03314 0.56 -0.2
662,317 - MPMX19_03314 0.56 -0.6
662,394 + MPMX19_03314 0.66 -0.6
662,394 + MPMX19_03314 0.66 -0.2
662,395 - MPMX19_03314 0.66 +0.2
662,395 - MPMX19_03314 0.66 +0.1
662,395 - MPMX19_03314 0.66 -0.1
662,821 + -1.9
662,822 - -1.6
662,892 + MPMX19_03315 0.12 -1.1
662,892 + MPMX19_03315 0.12 +1.5
663,075 + MPMX19_03315 0.34 -1.4
663,075 + MPMX19_03315 0.34 +1.5
663,075 + MPMX19_03315 0.34 -0.3
663,075 + MPMX19_03315 0.34 -2.3
663,076 - MPMX19_03315 0.34 +0.6
663,076 - MPMX19_03315 0.34 +0.2
663,076 - MPMX19_03315 0.34 -1.2
663,076 - MPMX19_03315 0.34 -0.1
663,076 - MPMX19_03315 0.34 -1.0
663,249 + MPMX19_03315 0.56 -1.7
663,249 + MPMX19_03315 0.56 -0.4
663,250 - MPMX19_03315 0.56 -0.1
663,250 - MPMX19_03315 0.56 +1.0
663,386 - MPMX19_03315 0.72 -0.1
663,386 - MPMX19_03315 0.72 +0.8
663,386 - MPMX19_03315 0.72 -0.7
663,387 + MPMX19_03315 0.73 +0.4
663,387 + MPMX19_03315 0.73 +0.7
663,388 - MPMX19_03315 0.73 -1.4
663,388 - MPMX19_03315 0.73 -1.7
663,388 - MPMX19_03315 0.73 -0.6
663,647 + +0.5
663,652 - +0.1
663,807 + MPMX19_03316 0.13 -0.1
663,807 + MPMX19_03316 0.13 +0.3
663,808 - MPMX19_03316 0.13 -1.6
663,822 + MPMX19_03316 0.14 +0.1
663,823 - MPMX19_03316 0.14 -1.4
663,939 + MPMX19_03316 0.23 +0.2
663,940 - MPMX19_03316 0.24 +0.5
663,940 - MPMX19_03316 0.24 +0.3
663,940 - MPMX19_03316 0.24 -0.4
663,940 - MPMX19_03316 0.24 -0.7
663,978 + MPMX19_03316 0.27 -1.1
663,978 + MPMX19_03316 0.27 +0.0
663,978 + MPMX19_03316 0.27 -0.1
663,979 - MPMX19_03316 0.27 -0.1
663,979 - MPMX19_03316 0.27 +0.2
663,979 - MPMX19_03316 0.27 -0.3
664,101 + MPMX19_03316 0.37 -0.9
664,101 + MPMX19_03316 0.37 -1.1
664,101 + MPMX19_03316 0.37 -0.1
664,101 + MPMX19_03316 0.37 +0.7
664,102 - MPMX19_03316 0.37 -0.7
664,203 + MPMX19_03316 0.45 +0.1
664,204 - MPMX19_03316 0.45 -0.1
664,218 + MPMX19_03316 0.46 -1.8
664,218 + MPMX19_03316 0.46 +0.0
664,218 + MPMX19_03316 0.46 +0.3
664,218 + MPMX19_03316 0.46 -0.4
664,218 + MPMX19_03316 0.46 +0.2
664,219 - MPMX19_03316 0.46 -0.1
664,546 - MPMX19_03316 0.73 +0.0

Or see this region's nucleotide sequence