Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03304

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03303 and MPMX19_03304 overlap by 1 nucleotidesMPMX19_03304 and MPMX19_03305 are separated by 19 nucleotidesMPMX19_03305 and MPMX19_03306 are separated by 31 nucleotides MPMX19_03303: MPMX19_03303 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 649,837 to 650,919 _03303 MPMX19_03304: MPMX19_03304 - Pyridoxal 4-dehydrogenase, at 650,919 to 651,947 _03304 MPMX19_03305: MPMX19_03305 - L-fucose mutarotase, at 651,967 to 652,422 _03305 MPMX19_03306: MPMX19_03306 - hypothetical protein, at 652,454 to 653,635 _03306 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1at 650.086 kb on + strand, within MPMX19_03303at 650.086 kb on + strand, within MPMX19_03303at 650.087 kb on - strand, within MPMX19_03303at 650.087 kb on - strand, within MPMX19_03303at 650.087 kb on - strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.401 kb on + strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.402 kb on - strand, within MPMX19_03303at 650.589 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.662 kb on + strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 650.663 kb on - strand, within MPMX19_03303at 651.019 kb on - strandat 651.019 kb on - strandat 651.105 kb on + strand, within MPMX19_03304at 651.105 kb on + strand, within MPMX19_03304at 651.105 kb on + strand, within MPMX19_03304at 651.106 kb on - strand, within MPMX19_03304at 651.234 kb on + strand, within MPMX19_03304at 651.234 kb on + strand, within MPMX19_03304at 651.234 kb on + strand, within MPMX19_03304at 651.235 kb on - strand, within MPMX19_03304at 651.271 kb on - strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.276 kb on + strand, within MPMX19_03304at 651.277 kb on - strand, within MPMX19_03304at 651.277 kb on - strand, within MPMX19_03304at 651.277 kb on - strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.682 kb on - strand, within MPMX19_03304at 651.682 kb on - strand, within MPMX19_03304at 651.687 kb on + strand, within MPMX19_03304at 651.688 kb on - strand, within MPMX19_03304at 651.875 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.372 kb on + strand, within MPMX19_03305at 652.372 kb on + strand, within MPMX19_03305at 652.373 kb on - strand, within MPMX19_03305at 652.420 kb on + strandat 652.502 kb on + strandat 652.502 kb on + strandat 652.502 kb on + strandat 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.581 kb on - strand, within MPMX19_03306at 652.941 kb on + strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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650,086 + MPMX19_03303 0.23 -0.6
650,086 + MPMX19_03303 0.23 -1.3
650,087 - MPMX19_03303 0.23 -1.0
650,087 - MPMX19_03303 0.23 +1.1
650,087 - MPMX19_03303 0.23 -0.6
650,401 + MPMX19_03303 0.52 -1.1
650,401 + MPMX19_03303 0.52 -1.6
650,401 + MPMX19_03303 0.52 -1.3
650,401 + MPMX19_03303 0.52 -1.5
650,402 - MPMX19_03303 0.52 +1.1
650,402 - MPMX19_03303 0.52 -0.1
650,402 - MPMX19_03303 0.52 -0.5
650,402 - MPMX19_03303 0.52 -0.9
650,402 - MPMX19_03303 0.52 -0.9
650,402 - MPMX19_03303 0.52 -0.9
650,589 + MPMX19_03303 0.69 +0.7
650,662 + MPMX19_03303 0.76 +0.5
650,662 + MPMX19_03303 0.76 +0.1
650,662 + MPMX19_03303 0.76 -0.6
650,662 + MPMX19_03303 0.76 -1.9
650,662 + MPMX19_03303 0.76 -0.9
650,663 - MPMX19_03303 0.76 +0.1
650,663 - MPMX19_03303 0.76 +0.1
650,663 - MPMX19_03303 0.76 +0.5
650,663 - MPMX19_03303 0.76 -2.2
650,663 - MPMX19_03303 0.76 +0.6
651,019 - -0.1
651,019 - +0.8
651,105 + MPMX19_03304 0.18 -1.7
651,105 + MPMX19_03304 0.18 -0.7
651,105 + MPMX19_03304 0.18 -0.5
651,106 - MPMX19_03304 0.18 +0.0
651,234 + MPMX19_03304 0.31 +1.7
651,234 + MPMX19_03304 0.31 -2.1
651,234 + MPMX19_03304 0.31 -0.9
651,235 - MPMX19_03304 0.31 +0.3
651,271 - MPMX19_03304 0.34 +0.2
651,276 + MPMX19_03304 0.35 -0.6
651,276 + MPMX19_03304 0.35 -0.6
651,276 + MPMX19_03304 0.35 -0.3
651,276 + MPMX19_03304 0.35 -1.1
651,276 + MPMX19_03304 0.35 +0.1
651,277 - MPMX19_03304 0.35 +0.4
651,277 - MPMX19_03304 0.35 +0.4
651,277 - MPMX19_03304 0.35 -0.6
651,681 + MPMX19_03304 0.74 -1.3
651,681 + MPMX19_03304 0.74 -0.4
651,681 + MPMX19_03304 0.74 -1.4
651,682 - MPMX19_03304 0.74 +0.1
651,682 - MPMX19_03304 0.74 -0.9
651,687 + MPMX19_03304 0.75 +0.6
651,688 - MPMX19_03304 0.75 -1.3
651,875 + +1.3
651,959 + -1.6
651,959 + -0.8
651,959 + -0.9
651,959 + -0.4
651,960 - -0.8
651,960 - -0.3
651,960 - +0.7
651,960 - -0.8
651,960 - +0.2
652,318 + MPMX19_03305 0.77 -0.3
652,318 + MPMX19_03305 0.77 +0.7
652,318 + MPMX19_03305 0.77 -0.4
652,318 + MPMX19_03305 0.77 +0.1
652,318 + MPMX19_03305 0.77 -0.3
652,319 - MPMX19_03305 0.77 -1.1
652,319 - MPMX19_03305 0.77 +0.0
652,319 - MPMX19_03305 0.77 +0.7
652,319 - MPMX19_03305 0.77 +0.8
652,319 - MPMX19_03305 0.77 -0.4
652,372 + MPMX19_03305 0.89 -0.8
652,372 + MPMX19_03305 0.89 -1.7
652,373 - MPMX19_03305 0.89 +0.7
652,420 + +0.5
652,502 + +1.0
652,502 + -1.2
652,502 + +0.1
652,580 + MPMX19_03306 0.11 -0.1
652,580 + MPMX19_03306 0.11 -0.6
652,580 + MPMX19_03306 0.11 -2.3
652,580 + MPMX19_03306 0.11 -1.4
652,581 - MPMX19_03306 0.11 +0.2
652,941 + MPMX19_03306 0.41 +0.7
652,942 - MPMX19_03306 0.41 -1.1
652,942 - MPMX19_03306 0.41 -0.3
652,942 - MPMX19_03306 0.41 -0.5

Or see this region's nucleotide sequence