Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03276

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03275 and MPMX19_03276 are separated by 160 nucleotidesMPMX19_03276 and MPMX19_03277 are separated by 128 nucleotides MPMX19_03275: MPMX19_03275 - HTH-type transcriptional regulator PgrR, at 621,102 to 622,043 _03275 MPMX19_03276: MPMX19_03276 - hypothetical protein, at 622,204 to 622,644 _03276 MPMX19_03277: MPMX19_03277 - hypothetical protein, at 622,773 to 623,816 _03277 Position (kb) 622 623Strain fitness (log2 ratio) -2 -1 0 1at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.597 kb on + strand, within MPMX19_03275at 621.597 kb on + strand, within MPMX19_03275at 621.597 kb on + strand, within MPMX19_03275at 621.598 kb on - strand, within MPMX19_03275at 621.612 kb on + strand, within MPMX19_03275at 621.612 kb on + strand, within MPMX19_03275at 621.613 kb on - strand, within MPMX19_03275at 621.613 kb on - strand, within MPMX19_03275at 622.099 kb on + strandat 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.908 kb on + strand, within MPMX19_03277at 622.908 kb on + strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 623.322 kb on + strand, within MPMX19_03277at 623.463 kb on + strand, within MPMX19_03277at 623.463 kb on + strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
621,294 + MPMX19_03275 0.20 -0.2
621,294 + MPMX19_03275 0.20 -0.5
621,294 + MPMX19_03275 0.20 +0.3
621,294 + MPMX19_03275 0.20 -0.6
621,294 + MPMX19_03275 0.20 -0.4
621,294 + MPMX19_03275 0.20 +0.4
621,295 - MPMX19_03275 0.20 -1.2
621,295 - MPMX19_03275 0.20 +0.4
621,295 - MPMX19_03275 0.20 +0.4
621,295 - MPMX19_03275 0.20 -1.6
621,597 + MPMX19_03275 0.53 -0.6
621,597 + MPMX19_03275 0.53 +0.4
621,597 + MPMX19_03275 0.53 -0.2
621,598 - MPMX19_03275 0.53 +0.4
621,612 + MPMX19_03275 0.54 +0.2
621,612 + MPMX19_03275 0.54 -2.0
621,613 - MPMX19_03275 0.54 -0.4
621,613 - MPMX19_03275 0.54 -1.3
622,099 + -2.2
622,528 + MPMX19_03276 0.73 -1.6
622,528 + MPMX19_03276 0.73 -0.3
622,528 + MPMX19_03276 0.73 -1.0
622,528 + MPMX19_03276 0.73 -1.0
622,908 + MPMX19_03277 0.13 +0.7
622,908 + MPMX19_03277 0.13 -0.8
622,909 - MPMX19_03277 0.13 -0.0
622,909 - MPMX19_03277 0.13 +0.2
622,959 + MPMX19_03277 0.18 +0.4
622,959 + MPMX19_03277 0.18 -1.4
622,959 + MPMX19_03277 0.18 -2.3
622,960 - MPMX19_03277 0.18 +0.2
622,960 - MPMX19_03277 0.18 -0.9
623,322 + MPMX19_03277 0.53 +0.3
623,463 + MPMX19_03277 0.66 +0.7
623,463 + MPMX19_03277 0.66 +0.2
623,464 - MPMX19_03277 0.66 -0.3
623,464 - MPMX19_03277 0.66 -0.5
623,464 - MPMX19_03277 0.66 -0.6
623,464 - MPMX19_03277 0.66 +0.3
623,601 + MPMX19_03277 0.79 -1.1
623,601 + MPMX19_03277 0.79 -1.2
623,601 + MPMX19_03277 0.79 -0.3
623,601 + MPMX19_03277 0.79 -2.3
623,602 - MPMX19_03277 0.79 +0.3
623,602 - MPMX19_03277 0.79 +0.2
623,602 - MPMX19_03277 0.79 -0.1
623,602 - MPMX19_03277 0.79 -0.8
623,602 - MPMX19_03277 0.79 -0.6

Or see this region's nucleotide sequence