Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03264

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03263 and MPMX19_03264 are separated by 11 nucleotidesMPMX19_03264 and MPMX19_03265 overlap by 4 nucleotides MPMX19_03263: MPMX19_03263 - hypothetical protein, at 604,965 to 606,041 _03263 MPMX19_03264: MPMX19_03264 - hypothetical protein, at 606,053 to 608,230 _03264 MPMX19_03265: MPMX19_03265 - Spermidine/putrescine import ATP-binding protein PotA, at 608,227 to 609,399 _03265 Position (kb) 606 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 605.103 kb on + strand, within MPMX19_03263at 605.104 kb on - strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.205 kb on + strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.206 kb on - strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.310 kb on + strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.311 kb on - strand, within MPMX19_03263at 605.337 kb on + strand, within MPMX19_03263at 605.337 kb on + strand, within MPMX19_03263at 605.338 kb on - strand, within MPMX19_03263at 605.338 kb on - strand, within MPMX19_03263at 605.338 kb on - strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.391 kb on + strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.392 kb on - strand, within MPMX19_03263at 605.415 kb on + strand, within MPMX19_03263at 605.415 kb on + strand, within MPMX19_03263at 605.415 kb on + strand, within MPMX19_03263at 605.416 kb on - strand, within MPMX19_03263at 605.416 kb on - strand, within MPMX19_03263at 605.417 kb on + strand, within MPMX19_03263at 605.417 kb on + strand, within MPMX19_03263at 605.417 kb on + strand, within MPMX19_03263at 605.418 kb on - strand, within MPMX19_03263at 605.418 kb on - strand, within MPMX19_03263at 605.418 kb on - strand, within MPMX19_03263at 605.536 kb on - strand, within MPMX19_03263at 605.536 kb on - strand, within MPMX19_03263at 605.622 kb on + strand, within MPMX19_03263at 605.622 kb on + strand, within MPMX19_03263at 605.622 kb on + strand, within MPMX19_03263at 605.622 kb on + strand, within MPMX19_03263at 605.623 kb on - strand, within MPMX19_03263at 605.623 kb on - strand, within MPMX19_03263at 605.826 kb on + strand, within MPMX19_03263at 605.826 kb on + strand, within MPMX19_03263at 605.827 kb on - strand, within MPMX19_03263at 605.827 kb on - strand, within MPMX19_03263at 606.039 kb on + strandat 606.039 kb on + strandat 606.039 kb on + strandat 606.039 kb on + strandat 606.039 kb on + strandat 606.039 kb on + strandat 606.040 kb on - strandat 606.040 kb on - strandat 606.040 kb on - strandat 606.040 kb on - strandat 606.040 kb on - strandat 606.417 kb on - strand, within MPMX19_03264at 606.926 kb on + strand, within MPMX19_03264at 606.926 kb on + strand, within MPMX19_03264at 606.927 kb on - strand, within MPMX19_03264at 607.205 kb on + strand, within MPMX19_03264at 607.205 kb on + strand, within MPMX19_03264at 607.205 kb on + strand, within MPMX19_03264at 607.206 kb on - strand, within MPMX19_03264at 607.206 kb on - strand, within MPMX19_03264at 607.206 kb on - strand, within MPMX19_03264at 607.206 kb on - strand, within MPMX19_03264at 607.322 kb on + strand, within MPMX19_03264at 607.322 kb on + strand, within MPMX19_03264at 607.322 kb on + strand, within MPMX19_03264at 607.323 kb on - strand, within MPMX19_03264at 607.436 kb on + strand, within MPMX19_03264at 607.437 kb on - strand, within MPMX19_03264at 607.437 kb on - strand, within MPMX19_03264at 607.437 kb on - strand, within MPMX19_03264at 607.506 kb on - strand, within MPMX19_03264at 607.506 kb on - strand, within MPMX19_03264at 607.643 kb on + strand, within MPMX19_03264at 607.644 kb on - strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.739 kb on + strand, within MPMX19_03264at 607.974 kb on - strand, within MPMX19_03264at 607.974 kb on - strand, within MPMX19_03264at 608.033 kb on + strandat 608.033 kb on + strandat 608.033 kb on + strandat 608.033 kb on + strandat 608.034 kb on - strandat 608.034 kb on - strandat 608.034 kb on - strandat 608.034 kb on - strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.051 kb on + strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.052 kb on - strandat 608.081 kb on + strandat 608.082 kb on - strandat 608.099 kb on + strandat 608.099 kb on + strandat 608.099 kb on + strandat 608.100 kb on - strandat 608.100 kb on - strandat 608.345 kb on - strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.600 kb on - strand, within MPMX19_03265at 608.600 kb on - strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.971 kb on + strand, within MPMX19_03265at 608.972 kb on - strand, within MPMX19_03265

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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605,103 + MPMX19_03263 0.13 -0.2
605,104 - MPMX19_03263 0.13 +0.7
605,205 + MPMX19_03263 0.22 -0.7
605,205 + MPMX19_03263 0.22 -1.1
605,205 + MPMX19_03263 0.22 -0.3
605,205 + MPMX19_03263 0.22 -0.8
605,205 + MPMX19_03263 0.22 +0.4
605,206 - MPMX19_03263 0.22 -0.1
605,206 - MPMX19_03263 0.22 +0.0
605,206 - MPMX19_03263 0.22 -0.8
605,206 - MPMX19_03263 0.22 -0.5
605,206 - MPMX19_03263 0.22 -1.7
605,206 - MPMX19_03263 0.22 -0.5
605,206 - MPMX19_03263 0.22 -1.6
605,206 - MPMX19_03263 0.22 -0.6
605,206 - MPMX19_03263 0.22 -2.7
605,206 - MPMX19_03263 0.22 -0.8
605,310 + MPMX19_03263 0.32 -1.5
605,310 + MPMX19_03263 0.32 +1.0
605,310 + MPMX19_03263 0.32 +0.2
605,310 + MPMX19_03263 0.32 +0.4
605,310 + MPMX19_03263 0.32 -1.4
605,310 + MPMX19_03263 0.32 +0.9
605,310 + MPMX19_03263 0.32 -0.8
605,310 + MPMX19_03263 0.32 -0.7
605,311 - MPMX19_03263 0.32 -1.7
605,311 - MPMX19_03263 0.32 -0.1
605,311 - MPMX19_03263 0.32 +0.4
605,311 - MPMX19_03263 0.32 +0.6
605,311 - MPMX19_03263 0.32 -0.1
605,311 - MPMX19_03263 0.32 -0.6
605,311 - MPMX19_03263 0.32 +0.5
605,311 - MPMX19_03263 0.32 -0.8
605,311 - MPMX19_03263 0.32 -0.8
605,337 + MPMX19_03263 0.35 -0.3
605,337 + MPMX19_03263 0.35 -0.1
605,338 - MPMX19_03263 0.35 -2.0
605,338 - MPMX19_03263 0.35 -2.6
605,338 - MPMX19_03263 0.35 -0.7
605,391 + MPMX19_03263 0.40 -1.3
605,391 + MPMX19_03263 0.40 -0.8
605,391 + MPMX19_03263 0.40 -0.4
605,391 + MPMX19_03263 0.40 +0.4
605,391 + MPMX19_03263 0.40 -0.2
605,391 + MPMX19_03263 0.40 +0.6
605,391 + MPMX19_03263 0.40 -0.1
605,391 + MPMX19_03263 0.40 -0.2
605,391 + MPMX19_03263 0.40 +0.3
605,391 + MPMX19_03263 0.40 -0.2
605,391 + MPMX19_03263 0.40 -0.2
605,391 + MPMX19_03263 0.40 +1.7
605,392 - MPMX19_03263 0.40 -0.8
605,392 - MPMX19_03263 0.40 +0.5
605,392 - MPMX19_03263 0.40 +0.0
605,392 - MPMX19_03263 0.40 +0.6
605,392 - MPMX19_03263 0.40 -0.5
605,392 - MPMX19_03263 0.40 -0.8
605,392 - MPMX19_03263 0.40 -0.2
605,392 - MPMX19_03263 0.40 -0.8
605,392 - MPMX19_03263 0.40 +0.7
605,392 - MPMX19_03263 0.40 -0.9
605,392 - MPMX19_03263 0.40 -1.3
605,392 - MPMX19_03263 0.40 -0.7
605,415 + MPMX19_03263 0.42 -0.1
605,415 + MPMX19_03263 0.42 +0.7
605,415 + MPMX19_03263 0.42 +0.3
605,416 - MPMX19_03263 0.42 -0.1
605,416 - MPMX19_03263 0.42 -1.3
605,417 + MPMX19_03263 0.42 -0.6
605,417 + MPMX19_03263 0.42 -0.2
605,417 + MPMX19_03263 0.42 -1.5
605,418 - MPMX19_03263 0.42 -0.2
605,418 - MPMX19_03263 0.42 -0.6
605,418 - MPMX19_03263 0.42 +0.0
605,536 - MPMX19_03263 0.53 +0.2
605,536 - MPMX19_03263 0.53 +0.9
605,622 + MPMX19_03263 0.61 +0.0
605,622 + MPMX19_03263 0.61 -1.1
605,622 + MPMX19_03263 0.61 -0.1
605,622 + MPMX19_03263 0.61 -0.4
605,623 - MPMX19_03263 0.61 +0.4
605,623 - MPMX19_03263 0.61 +0.5
605,826 + MPMX19_03263 0.80 -1.5
605,826 + MPMX19_03263 0.80 -0.2
605,827 - MPMX19_03263 0.80 -0.3
605,827 - MPMX19_03263 0.80 +0.0
606,039 + +1.0
606,039 + -0.8
606,039 + -0.4
606,039 + -0.3
606,039 + +1.7
606,039 + +0.5
606,040 - -1.2
606,040 - +0.3
606,040 - -0.1
606,040 - -0.8
606,040 - +0.2
606,417 - MPMX19_03264 0.17 -1.3
606,926 + MPMX19_03264 0.40 -1.1
606,926 + MPMX19_03264 0.40 -0.6
606,927 - MPMX19_03264 0.40 -0.3
607,205 + MPMX19_03264 0.53 -1.3
607,205 + MPMX19_03264 0.53 +0.2
607,205 + MPMX19_03264 0.53 -2.2
607,206 - MPMX19_03264 0.53 +0.6
607,206 - MPMX19_03264 0.53 -0.9
607,206 - MPMX19_03264 0.53 -0.4
607,206 - MPMX19_03264 0.53 -2.8
607,322 + MPMX19_03264 0.58 -0.7
607,322 + MPMX19_03264 0.58 -0.4
607,322 + MPMX19_03264 0.58 -2.6
607,323 - MPMX19_03264 0.58 -0.7
607,436 + MPMX19_03264 0.63 -0.1
607,437 - MPMX19_03264 0.64 +0.4
607,437 - MPMX19_03264 0.64 +2.5
607,437 - MPMX19_03264 0.64 -0.5
607,506 - MPMX19_03264 0.67 -1.7
607,506 - MPMX19_03264 0.67 +0.7
607,643 + MPMX19_03264 0.73 -3.0
607,644 - MPMX19_03264 0.73 +0.5
607,739 + MPMX19_03264 0.77 -0.9
607,739 + MPMX19_03264 0.77 -1.1
607,739 + MPMX19_03264 0.77 -1.6
607,739 + MPMX19_03264 0.77 -1.2
607,739 + MPMX19_03264 0.77 -0.0
607,739 + MPMX19_03264 0.77 -1.1
607,974 - MPMX19_03264 0.88 +1.6
607,974 - MPMX19_03264 0.88 -1.2
608,033 + -1.1
608,033 + +0.2
608,033 + -0.3
608,033 + -0.3
608,034 - -1.3
608,034 - -0.2
608,034 - +0.5
608,034 - -1.3
608,051 + -2.2
608,051 + -0.7
608,051 + +0.1
608,051 + -0.3
608,051 + -0.6
608,051 + +2.1
608,052 - -0.5
608,052 - -0.7
608,052 - -2.1
608,052 - -0.5
608,052 - -0.3
608,052 - -0.3
608,081 + -0.1
608,082 - -0.4
608,099 + -0.7
608,099 + -0.7
608,099 + -0.8
608,100 - -0.8
608,100 - -1.1
608,345 - MPMX19_03265 0.10 +1.4
608,557 + MPMX19_03265 0.28 -0.8
608,557 + MPMX19_03265 0.28 -0.2
608,557 + MPMX19_03265 0.28 +0.2
608,557 + MPMX19_03265 0.28 -0.8
608,557 + MPMX19_03265 0.28 -2.3
608,558 - MPMX19_03265 0.28 +0.3
608,558 - MPMX19_03265 0.28 -0.7
608,558 - MPMX19_03265 0.28 +0.3
608,558 - MPMX19_03265 0.28 +0.4
608,558 - MPMX19_03265 0.28 -1.1
608,600 - MPMX19_03265 0.32 -1.1
608,600 - MPMX19_03265 0.32 -0.4
608,660 + MPMX19_03265 0.37 -0.3
608,660 + MPMX19_03265 0.37 -0.4
608,660 + MPMX19_03265 0.37 -0.6
608,660 + MPMX19_03265 0.37 -1.3
608,660 + MPMX19_03265 0.37 +0.9
608,661 - MPMX19_03265 0.37 +0.3
608,661 - MPMX19_03265 0.37 +0.3
608,661 - MPMX19_03265 0.37 -1.8
608,872 + MPMX19_03265 0.55 +0.3
608,872 + MPMX19_03265 0.55 +1.5
608,872 + MPMX19_03265 0.55 +0.4
608,872 + MPMX19_03265 0.55 -0.2
608,872 + MPMX19_03265 0.55 -0.1
608,872 + MPMX19_03265 0.55 -0.1
608,872 + MPMX19_03265 0.55 +0.9
608,873 - MPMX19_03265 0.55 +0.0
608,873 - MPMX19_03265 0.55 -1.2
608,873 - MPMX19_03265 0.55 -2.2
608,873 - MPMX19_03265 0.55 +0.4
608,971 + MPMX19_03265 0.63 +0.3
608,972 - MPMX19_03265 0.64 +1.3

Or see this region's nucleotide sequence