Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03249

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03248 and MPMX19_03249 are separated by 6 nucleotidesMPMX19_03249 and MPMX19_03250 are separated by 241 nucleotides MPMX19_03248: MPMX19_03248 - 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component, at 588,317 to 589,402 _03248 MPMX19_03249: MPMX19_03249 - Carnitine monooxygenase oxygenase subunit, at 589,409 to 590,644 _03249 MPMX19_03250: MPMX19_03250 - Glycine cleavage system transcriptional activator, at 590,886 to 591,812 _03250 Position (kb) 589 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1at 588.660 kb on + strand, within MPMX19_03248at 588.660 kb on + strand, within MPMX19_03248at 588.661 kb on - strand, within MPMX19_03248at 588.735 kb on + strand, within MPMX19_03248at 588.735 kb on + strand, within MPMX19_03248at 588.735 kb on + strand, within MPMX19_03248at 588.736 kb on - strand, within MPMX19_03248at 588.736 kb on - strand, within MPMX19_03248at 588.753 kb on + strand, within MPMX19_03248at 588.753 kb on + strand, within MPMX19_03248at 588.753 kb on + strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.754 kb on - strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.969 kb on + strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 588.970 kb on - strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.023 kb on + strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.024 kb on - strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.194 kb on + strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.195 kb on - strand, within MPMX19_03248at 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.410 kb on + strandat 589.411 kb on - strandat 589.411 kb on - strandat 589.411 kb on - strandat 589.411 kb on - strandat 589.411 kb on - strandat 589.411 kb on - strandat 589.464 kb on + strandat 589.464 kb on + strandat 589.464 kb on + strandat 589.464 kb on + strandat 589.465 kb on - strandat 589.465 kb on - strandat 589.465 kb on - strandat 589.465 kb on - strandat 589.465 kb on - strandat 589.524 kb on + strandat 589.524 kb on + strandat 589.524 kb on + strandat 589.525 kb on - strandat 589.525 kb on - strandat 589.620 kb on + strand, within MPMX19_03249at 589.620 kb on + strand, within MPMX19_03249at 589.621 kb on - strand, within MPMX19_03249at 589.667 kb on + strand, within MPMX19_03249at 589.667 kb on + strand, within MPMX19_03249at 589.668 kb on - strand, within MPMX19_03249at 589.668 kb on - strand, within MPMX19_03249at 589.750 kb on - strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.833 kb on + strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 589.834 kb on - strand, within MPMX19_03249at 590.040 kb on + strand, within MPMX19_03249at 590.040 kb on + strand, within MPMX19_03249at 590.040 kb on + strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.041 kb on - strand, within MPMX19_03249at 590.142 kb on + strand, within MPMX19_03249at 590.142 kb on + strand, within MPMX19_03249at 590.143 kb on - strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.202 kb on + strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.203 kb on - strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.310 kb on + strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.311 kb on - strand, within MPMX19_03249at 590.526 kb on + strandat 590.526 kb on + strandat 590.526 kb on + strandat 590.527 kb on - strandat 590.527 kb on - strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.571 kb on + strandat 590.572 kb on - strandat 590.572 kb on - strandat 590.572 kb on - strandat 590.572 kb on - strandat 590.592 kb on + strandat 590.592 kb on + strandat 590.592 kb on + strandat 590.593 kb on - strandat 590.827 kb on + strandat 590.827 kb on + strandat 590.828 kb on - strandat 590.998 kb on + strand, within MPMX19_03250at 590.998 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.591 kb on - strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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588,660 + MPMX19_03248 0.32 -0.7
588,660 + MPMX19_03248 0.32 -2.2
588,661 - MPMX19_03248 0.32 -1.3
588,735 + MPMX19_03248 0.38 +0.0
588,735 + MPMX19_03248 0.38 -0.8
588,735 + MPMX19_03248 0.38 -1.6
588,736 - MPMX19_03248 0.39 -0.7
588,736 - MPMX19_03248 0.39 -0.3
588,753 + MPMX19_03248 0.40 +1.2
588,753 + MPMX19_03248 0.40 -0.2
588,753 + MPMX19_03248 0.40 -0.0
588,754 - MPMX19_03248 0.40 +0.4
588,754 - MPMX19_03248 0.40 -0.1
588,754 - MPMX19_03248 0.40 -1.8
588,754 - MPMX19_03248 0.40 -2.7
588,754 - MPMX19_03248 0.40 -0.3
588,754 - MPMX19_03248 0.40 -2.0
588,969 + MPMX19_03248 0.60 +0.5
588,969 + MPMX19_03248 0.60 +1.0
588,969 + MPMX19_03248 0.60 +0.6
588,969 + MPMX19_03248 0.60 -0.5
588,969 + MPMX19_03248 0.60 +0.0
588,969 + MPMX19_03248 0.60 +0.9
588,969 + MPMX19_03248 0.60 +0.0
588,969 + MPMX19_03248 0.60 -0.1
588,969 + MPMX19_03248 0.60 -0.6
588,969 + MPMX19_03248 0.60 -0.0
588,969 + MPMX19_03248 0.60 +0.1
588,969 + MPMX19_03248 0.60 +0.2
588,969 + MPMX19_03248 0.60 -0.0
588,970 - MPMX19_03248 0.60 -1.1
588,970 - MPMX19_03248 0.60 -1.0
588,970 - MPMX19_03248 0.60 +0.3
588,970 - MPMX19_03248 0.60 +0.2
588,970 - MPMX19_03248 0.60 -0.7
588,970 - MPMX19_03248 0.60 +0.2
588,970 - MPMX19_03248 0.60 +0.4
588,970 - MPMX19_03248 0.60 +0.7
588,970 - MPMX19_03248 0.60 -1.3
588,970 - MPMX19_03248 0.60 -0.1
588,970 - MPMX19_03248 0.60 -0.5
588,970 - MPMX19_03248 0.60 -0.8
589,023 + MPMX19_03248 0.65 -1.1
589,023 + MPMX19_03248 0.65 -0.6
589,023 + MPMX19_03248 0.65 -0.9
589,023 + MPMX19_03248 0.65 -2.1
589,023 + MPMX19_03248 0.65 -1.3
589,023 + MPMX19_03248 0.65 -0.6
589,023 + MPMX19_03248 0.65 -0.1
589,023 + MPMX19_03248 0.65 -0.3
589,023 + MPMX19_03248 0.65 -1.3
589,023 + MPMX19_03248 0.65 +0.3
589,023 + MPMX19_03248 0.65 -0.5
589,023 + MPMX19_03248 0.65 +0.8
589,024 - MPMX19_03248 0.65 -0.8
589,024 - MPMX19_03248 0.65 +0.2
589,024 - MPMX19_03248 0.65 -1.7
589,024 - MPMX19_03248 0.65 -0.8
589,024 - MPMX19_03248 0.65 -2.3
589,024 - MPMX19_03248 0.65 -0.3
589,024 - MPMX19_03248 0.65 +1.2
589,024 - MPMX19_03248 0.65 -0.6
589,024 - MPMX19_03248 0.65 +0.2
589,024 - MPMX19_03248 0.65 -0.1
589,024 - MPMX19_03248 0.65 -0.4
589,024 - MPMX19_03248 0.65 -0.8
589,194 + MPMX19_03248 0.81 -0.3
589,194 + MPMX19_03248 0.81 -0.1
589,194 + MPMX19_03248 0.81 +0.7
589,194 + MPMX19_03248 0.81 +0.3
589,194 + MPMX19_03248 0.81 -0.6
589,194 + MPMX19_03248 0.81 +0.2
589,194 + MPMX19_03248 0.81 -0.1
589,194 + MPMX19_03248 0.81 +0.7
589,194 + MPMX19_03248 0.81 -0.1
589,194 + MPMX19_03248 0.81 -0.7
589,194 + MPMX19_03248 0.81 -0.6
589,194 + MPMX19_03248 0.81 -1.4
589,194 + MPMX19_03248 0.81 -0.6
589,194 + MPMX19_03248 0.81 -0.8
589,194 + MPMX19_03248 0.81 +0.1
589,195 - MPMX19_03248 0.81 +0.3
589,195 - MPMX19_03248 0.81 +0.2
589,195 - MPMX19_03248 0.81 -1.0
589,195 - MPMX19_03248 0.81 -0.7
589,195 - MPMX19_03248 0.81 -0.1
589,410 + -1.6
589,410 + +0.6
589,410 + +0.9
589,410 + -1.6
589,410 + +0.7
589,410 + +0.2
589,410 + -1.1
589,410 + +0.4
589,410 + +0.3
589,410 + +0.7
589,411 - -1.4
589,411 - -0.8
589,411 - -1.1
589,411 - -0.5
589,411 - -0.5
589,411 - -1.7
589,464 + -2.9
589,464 + -1.7
589,464 + -0.1
589,464 + -0.1
589,465 - -1.7
589,465 - +0.1
589,465 - -2.2
589,465 - +1.0
589,465 - -0.1
589,524 + -1.3
589,524 + -1.3
589,524 + -0.3
589,525 - -1.3
589,525 - -1.1
589,620 + MPMX19_03249 0.17 -0.2
589,620 + MPMX19_03249 0.17 +0.0
589,621 - MPMX19_03249 0.17 -0.3
589,667 + MPMX19_03249 0.21 +0.6
589,667 + MPMX19_03249 0.21 -0.4
589,668 - MPMX19_03249 0.21 -0.3
589,668 - MPMX19_03249 0.21 +1.0
589,750 - MPMX19_03249 0.28 -0.8
589,833 + MPMX19_03249 0.34 +0.2
589,833 + MPMX19_03249 0.34 +0.7
589,833 + MPMX19_03249 0.34 +0.5
589,833 + MPMX19_03249 0.34 -1.8
589,833 + MPMX19_03249 0.34 -0.6
589,833 + MPMX19_03249 0.34 -1.2
589,833 + MPMX19_03249 0.34 -0.2
589,833 + MPMX19_03249 0.34 -1.3
589,833 + MPMX19_03249 0.34 +0.2
589,833 + MPMX19_03249 0.34 +0.0
589,833 + MPMX19_03249 0.34 -0.3
589,834 - MPMX19_03249 0.34 +0.2
589,834 - MPMX19_03249 0.34 +1.7
589,834 - MPMX19_03249 0.34 +0.1
589,834 - MPMX19_03249 0.34 -0.5
589,834 - MPMX19_03249 0.34 -0.1
589,834 - MPMX19_03249 0.34 +0.5
589,834 - MPMX19_03249 0.34 -1.2
589,834 - MPMX19_03249 0.34 -0.7
589,834 - MPMX19_03249 0.34 +1.2
589,834 - MPMX19_03249 0.34 +0.0
589,834 - MPMX19_03249 0.34 +1.5
589,834 - MPMX19_03249 0.34 +0.1
590,040 + MPMX19_03249 0.51 +0.5
590,040 + MPMX19_03249 0.51 +1.5
590,040 + MPMX19_03249 0.51 -1.3
590,041 - MPMX19_03249 0.51 -0.3
590,041 - MPMX19_03249 0.51 -0.3
590,041 - MPMX19_03249 0.51 -1.3
590,041 - MPMX19_03249 0.51 +1.3
590,041 - MPMX19_03249 0.51 -1.1
590,041 - MPMX19_03249 0.51 -0.1
590,041 - MPMX19_03249 0.51 -0.2
590,041 - MPMX19_03249 0.51 +1.0
590,142 + MPMX19_03249 0.59 +0.5
590,142 + MPMX19_03249 0.59 +0.4
590,143 - MPMX19_03249 0.59 -0.7
590,202 + MPMX19_03249 0.64 -0.1
590,202 + MPMX19_03249 0.64 -0.4
590,202 + MPMX19_03249 0.64 -0.1
590,202 + MPMX19_03249 0.64 -0.0
590,202 + MPMX19_03249 0.64 +0.6
590,202 + MPMX19_03249 0.64 -0.7
590,202 + MPMX19_03249 0.64 -1.5
590,202 + MPMX19_03249 0.64 -0.4
590,203 - MPMX19_03249 0.64 -0.5
590,203 - MPMX19_03249 0.64 -0.8
590,203 - MPMX19_03249 0.64 -1.6
590,203 - MPMX19_03249 0.64 -1.8
590,310 + MPMX19_03249 0.73 -0.5
590,310 + MPMX19_03249 0.73 +0.5
590,310 + MPMX19_03249 0.73 -1.4
590,310 + MPMX19_03249 0.73 +0.2
590,310 + MPMX19_03249 0.73 +1.5
590,310 + MPMX19_03249 0.73 -1.1
590,310 + MPMX19_03249 0.73 -2.1
590,310 + MPMX19_03249 0.73 -0.3
590,310 + MPMX19_03249 0.73 +0.0
590,311 - MPMX19_03249 0.73 +0.1
590,311 - MPMX19_03249 0.73 -0.4
590,311 - MPMX19_03249 0.73 -0.0
590,311 - MPMX19_03249 0.73 -0.4
590,311 - MPMX19_03249 0.73 +0.9
590,526 + -1.1
590,526 + -0.3
590,526 + -0.3
590,527 - -0.1
590,527 - +0.9
590,571 + -0.9
590,571 + +1.2
590,571 + -0.4
590,571 + +0.2
590,571 + -1.2
590,571 + -1.2
590,571 + -1.4
590,571 + +0.3
590,572 - +0.0
590,572 - +0.7
590,572 - +0.4
590,572 - -0.1
590,592 + -1.3
590,592 + +0.5
590,592 + -0.1
590,593 - -0.9
590,827 + -0.7
590,827 + +1.7
590,828 - -1.7
590,998 + MPMX19_03250 0.12 +0.6
590,998 + MPMX19_03250 0.12 -0.4
591,307 + MPMX19_03250 0.45 -2.2
591,307 + MPMX19_03250 0.45 -0.8
591,307 + MPMX19_03250 0.45 -1.6
591,307 + MPMX19_03250 0.45 -2.0
591,307 + MPMX19_03250 0.45 +1.4
591,308 - MPMX19_03250 0.46 -0.4
591,308 - MPMX19_03250 0.46 +0.3
591,308 - MPMX19_03250 0.46 -1.0
591,308 - MPMX19_03250 0.46 -0.4
591,591 - MPMX19_03250 0.76 +0.0
591,595 + MPMX19_03250 0.76 +0.3
591,595 + MPMX19_03250 0.76 -1.0
591,595 + MPMX19_03250 0.76 -0.3
591,595 + MPMX19_03250 0.76 +0.2
591,596 - MPMX19_03250 0.77 -1.6
591,596 - MPMX19_03250 0.77 +0.3
591,596 - MPMX19_03250 0.77 +0.6
591,596 - MPMX19_03250 0.77 +0.2
591,596 - MPMX19_03250 0.77 -0.3
591,596 - MPMX19_03250 0.77 +0.2
591,596 - MPMX19_03250 0.77 -0.3

Or see this region's nucleotide sequence