Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03234

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03233 and MPMX19_03234 overlap by 1 nucleotidesMPMX19_03234 and MPMX19_03235 overlap by 4 nucleotidesMPMX19_03235 and MPMX19_03236 are separated by 164 nucleotides MPMX19_03233: MPMX19_03233 - Iron(3+)-hydroxamate import system permease protein FhuB, at 535,156 to 537,150 _03233 MPMX19_03234: MPMX19_03234 - hypothetical protein, at 537,150 to 538,247 _03234 MPMX19_03235: MPMX19_03235 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 538,244 to 539,056 _03235 MPMX19_03236: MPMX19_03236 - Protein MbtH, at 539,221 to 539,436 _03236 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.722 kb on + strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 536.723 kb on - strand, within MPMX19_03233at 537.077 kb on - strandat 537.077 kb on - strandat 537.582 kb on + strand, within MPMX19_03234at 537.582 kb on + strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.583 kb on - strand, within MPMX19_03234at 537.681 kb on + strand, within MPMX19_03234at 537.682 kb on - strand, within MPMX19_03234at 537.682 kb on - strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.684 kb on + strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.685 kb on - strand, within MPMX19_03234at 537.861 kb on + strand, within MPMX19_03234at 537.861 kb on + strand, within MPMX19_03234at 537.861 kb on + strand, within MPMX19_03234at 537.862 kb on - strand, within MPMX19_03234at 537.862 kb on - strand, within MPMX19_03234at 538.194 kb on + strandat 538.195 kb on - strandat 538.284 kb on + strandat 538.284 kb on + strandat 538.285 kb on - strandat 538.590 kb on - strand, within MPMX19_03235at 538.590 kb on - strand, within MPMX19_03235at 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 539.109 kb on + strandat 539.110 kb on - strandat 539.138 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
536,722 + MPMX19_03233 0.78 -1.2
536,722 + MPMX19_03233 0.78 -0.7
536,722 + MPMX19_03233 0.78 +0.4
536,722 + MPMX19_03233 0.78 -0.1
536,722 + MPMX19_03233 0.78 -1.3
536,722 + MPMX19_03233 0.78 -0.2
536,722 + MPMX19_03233 0.78 +0.6
536,722 + MPMX19_03233 0.78 -0.9
536,722 + MPMX19_03233 0.78 +1.6
536,722 + MPMX19_03233 0.78 +0.4
536,722 + MPMX19_03233 0.78 -0.3
536,722 + MPMX19_03233 0.78 -0.9
536,722 + MPMX19_03233 0.78 -1.1
536,722 + MPMX19_03233 0.78 -1.0
536,723 - MPMX19_03233 0.79 -1.3
536,723 - MPMX19_03233 0.79 -0.2
536,723 - MPMX19_03233 0.79 +0.7
536,723 - MPMX19_03233 0.79 +0.0
536,723 - MPMX19_03233 0.79 -0.6
536,723 - MPMX19_03233 0.79 -1.4
536,723 - MPMX19_03233 0.79 +0.4
536,723 - MPMX19_03233 0.79 -0.4
537,077 - -0.9
537,077 - +1.4
537,582 + MPMX19_03234 0.39 +1.0
537,582 + MPMX19_03234 0.39 +0.4
537,583 - MPMX19_03234 0.39 -0.5
537,583 - MPMX19_03234 0.39 +0.9
537,583 - MPMX19_03234 0.39 -0.2
537,583 - MPMX19_03234 0.39 +1.0
537,681 + MPMX19_03234 0.48 -0.2
537,682 - MPMX19_03234 0.48 +0.1
537,682 - MPMX19_03234 0.48 +0.8
537,684 + MPMX19_03234 0.49 -0.3
537,684 + MPMX19_03234 0.49 -0.1
537,684 + MPMX19_03234 0.49 -0.3
537,684 + MPMX19_03234 0.49 -1.7
537,684 + MPMX19_03234 0.49 -1.6
537,684 + MPMX19_03234 0.49 +0.1
537,684 + MPMX19_03234 0.49 +0.1
537,685 - MPMX19_03234 0.49 +0.1
537,685 - MPMX19_03234 0.49 -0.3
537,685 - MPMX19_03234 0.49 +0.3
537,685 - MPMX19_03234 0.49 +0.2
537,685 - MPMX19_03234 0.49 -0.6
537,685 - MPMX19_03234 0.49 -0.2
537,685 - MPMX19_03234 0.49 -0.3
537,685 - MPMX19_03234 0.49 -0.6
537,685 - MPMX19_03234 0.49 -0.1
537,861 + MPMX19_03234 0.65 -1.0
537,861 + MPMX19_03234 0.65 -1.9
537,861 + MPMX19_03234 0.65 -0.3
537,862 - MPMX19_03234 0.65 -0.1
537,862 - MPMX19_03234 0.65 -1.1
538,194 + -0.3
538,195 - -0.9
538,284 + -0.3
538,284 + +0.1
538,285 - -1.6
538,590 - MPMX19_03235 0.43 +0.8
538,590 - MPMX19_03235 0.43 -1.3
538,991 + +1.7
538,991 + +0.6
538,991 + -2.2
538,991 + -1.3
538,991 + +0.4
538,991 + -0.9
538,991 + +0.5
538,991 + +0.7
538,991 + -0.1
538,992 - -0.6
538,992 - +2.5
538,992 - +0.1
538,992 - -0.3
539,109 + +0.6
539,110 - -1.3
539,138 - +0.2

Or see this region's nucleotide sequence