Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03131

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03130 and MPMX19_03131 are separated by 258 nucleotidesMPMX19_03131 and MPMX19_03132 are separated by 80 nucleotides MPMX19_03130: MPMX19_03130 - Anaerobic nitric oxide reductase transcription regulator NorR, at 417,857 to 419,284 _03130 MPMX19_03131: MPMX19_03131 - putative 3-hydroxybutyryl-CoA dehydrogenase, at 419,543 to 420,508 _03131 MPMX19_03132: MPMX19_03132 - 3-keto-5-aminohexanoate cleavage enzyme, at 420,589 to 421,527 _03132 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.911 kb on + strand, within MPMX19_03130at 418.911 kb on + strand, within MPMX19_03130at 418.911 kb on + strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 419.011 kb on - strand, within MPMX19_03130at 419.458 kb on + strandat 419.458 kb on + strandat 419.459 kb on - strandat 419.459 kb on - strandat 419.459 kb on - strandat 419.459 kb on - strandat 419.782 kb on + strand, within MPMX19_03131at 420.537 kb on + strandat 420.538 kb on - strandat 420.971 kb on - strand, within MPMX19_03132at 421.003 kb on + strand, within MPMX19_03132at 421.004 kb on - strand, within MPMX19_03132at 421.004 kb on - strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.057 kb on + strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.058 kb on - strand, within MPMX19_03132at 421.059 kb on + strand, within MPMX19_03132at 421.060 kb on - strand, within MPMX19_03132at 421.060 kb on - strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.111 kb on + strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.112 kb on - strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.129 kb on + strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.130 kb on - strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.276 kb on + strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.277 kb on - strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.378 kb on + strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132at 421.379 kb on - strand, within MPMX19_03132

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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418,576 - MPMX19_03130 0.50 -0.6
418,576 - MPMX19_03130 0.50 -0.9
418,576 - MPMX19_03130 0.50 -0.7
418,576 - MPMX19_03130 0.50 -0.9
418,576 - MPMX19_03130 0.50 +0.6
418,576 - MPMX19_03130 0.50 -1.2
418,576 - MPMX19_03130 0.50 -1.0
418,576 - MPMX19_03130 0.50 -0.3
418,576 - MPMX19_03130 0.50 +0.9
418,821 + MPMX19_03130 0.68 +1.2
418,821 + MPMX19_03130 0.68 -0.1
418,821 + MPMX19_03130 0.68 -1.4
418,821 + MPMX19_03130 0.68 -0.3
418,821 + MPMX19_03130 0.68 -0.3
418,822 - MPMX19_03130 0.68 -2.7
418,822 - MPMX19_03130 0.68 +1.0
418,822 - MPMX19_03130 0.68 -1.0
418,822 - MPMX19_03130 0.68 -0.7
418,911 + MPMX19_03130 0.74 -0.5
418,911 + MPMX19_03130 0.74 +0.4
418,911 + MPMX19_03130 0.74 -0.6
418,912 - MPMX19_03130 0.74 +0.5
418,912 - MPMX19_03130 0.74 +0.6
418,912 - MPMX19_03130 0.74 -0.6
418,912 - MPMX19_03130 0.74 -0.7
418,912 - MPMX19_03130 0.74 +1.1
418,912 - MPMX19_03130 0.74 -0.6
418,912 - MPMX19_03130 0.74 -0.2
418,912 - MPMX19_03130 0.74 -2.0
418,912 - MPMX19_03130 0.74 -0.6
419,011 - MPMX19_03130 0.81 +1.5
419,458 + -0.9
419,458 + +0.9
419,459 - -1.7
419,459 - -0.3
419,459 - +0.1
419,459 - -1.1
419,782 + MPMX19_03131 0.25 +0.0
420,537 + +1.5
420,538 - -0.1
420,971 - MPMX19_03132 0.41 -1.1
421,003 + MPMX19_03132 0.44 +0.7
421,004 - MPMX19_03132 0.44 -0.5
421,004 - MPMX19_03132 0.44 -1.1
421,057 + MPMX19_03132 0.50 +0.8
421,057 + MPMX19_03132 0.50 +1.1
421,057 + MPMX19_03132 0.50 -2.5
421,057 + MPMX19_03132 0.50 -1.2
421,057 + MPMX19_03132 0.50 -1.4
421,057 + MPMX19_03132 0.50 +0.4
421,057 + MPMX19_03132 0.50 -0.7
421,058 - MPMX19_03132 0.50 +0.1
421,058 - MPMX19_03132 0.50 +1.7
421,058 - MPMX19_03132 0.50 +0.9
421,058 - MPMX19_03132 0.50 -0.1
421,058 - MPMX19_03132 0.50 +0.3
421,059 + MPMX19_03132 0.50 -0.4
421,060 - MPMX19_03132 0.50 +0.1
421,060 - MPMX19_03132 0.50 -0.6
421,111 + MPMX19_03132 0.56 -0.1
421,111 + MPMX19_03132 0.56 -1.6
421,111 + MPMX19_03132 0.56 -1.4
421,111 + MPMX19_03132 0.56 -0.3
421,111 + MPMX19_03132 0.56 -2.6
421,111 + MPMX19_03132 0.56 +0.4
421,111 + MPMX19_03132 0.56 -0.1
421,112 - MPMX19_03132 0.56 -0.3
421,112 - MPMX19_03132 0.56 +0.7
421,112 - MPMX19_03132 0.56 -1.6
421,112 - MPMX19_03132 0.56 -0.7
421,112 - MPMX19_03132 0.56 -1.7
421,112 - MPMX19_03132 0.56 -0.6
421,112 - MPMX19_03132 0.56 +0.2
421,112 - MPMX19_03132 0.56 -1.1
421,112 - MPMX19_03132 0.56 -0.1
421,112 - MPMX19_03132 0.56 -1.7
421,129 + MPMX19_03132 0.58 +0.1
421,129 + MPMX19_03132 0.58 -1.4
421,129 + MPMX19_03132 0.58 -1.6
421,129 + MPMX19_03132 0.58 -0.4
421,130 - MPMX19_03132 0.58 -0.0
421,130 - MPMX19_03132 0.58 -0.9
421,130 - MPMX19_03132 0.58 -1.1
421,130 - MPMX19_03132 0.58 -0.4
421,130 - MPMX19_03132 0.58 -0.1
421,130 - MPMX19_03132 0.58 -1.1
421,130 - MPMX19_03132 0.58 +0.1
421,276 + MPMX19_03132 0.73 +0.2
421,276 + MPMX19_03132 0.73 +0.4
421,276 + MPMX19_03132 0.73 -0.9
421,276 + MPMX19_03132 0.73 -0.0
421,277 - MPMX19_03132 0.73 -0.4
421,277 - MPMX19_03132 0.73 -0.1
421,277 - MPMX19_03132 0.73 -0.3
421,277 - MPMX19_03132 0.73 -2.0
421,277 - MPMX19_03132 0.73 -2.4
421,277 - MPMX19_03132 0.73 +0.3
421,277 - MPMX19_03132 0.73 +0.1
421,277 - MPMX19_03132 0.73 -1.1
421,378 + MPMX19_03132 0.84 -0.5
421,378 + MPMX19_03132 0.84 -0.5
421,378 + MPMX19_03132 0.84 -0.2
421,378 + MPMX19_03132 0.84 +0.9
421,378 + MPMX19_03132 0.84 -1.3
421,379 - MPMX19_03132 0.84 +0.3
421,379 - MPMX19_03132 0.84 -1.5
421,379 - MPMX19_03132 0.84 +0.1
421,379 - MPMX19_03132 0.84 +0.1
421,379 - MPMX19_03132 0.84 -0.4

Or see this region's nucleotide sequence