Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03130

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03129 and MPMX19_03130 are separated by 95 nucleotidesMPMX19_03130 and MPMX19_03131 are separated by 258 nucleotides MPMX19_03129: MPMX19_03129 - Citrate/malate transporter, at 416,400 to 417,761 _03129 MPMX19_03130: MPMX19_03130 - Anaerobic nitric oxide reductase transcription regulator NorR, at 417,857 to 419,284 _03130 MPMX19_03131: MPMX19_03131 - putative 3-hydroxybutyryl-CoA dehydrogenase, at 419,543 to 420,508 _03131 Position (kb) 417 418 419 420Strain fitness (log2 ratio) -2 -1 0 1at 417.030 kb on + strand, within MPMX19_03129at 417.030 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.280 kb on - strand, within MPMX19_03129at 417.280 kb on - strand, within MPMX19_03129at 417.280 kb on - strand, within MPMX19_03129at 417.408 kb on + strand, within MPMX19_03129at 417.408 kb on + strand, within MPMX19_03129at 417.408 kb on + strand, within MPMX19_03129at 417.409 kb on - strand, within MPMX19_03129at 417.409 kb on - strand, within MPMX19_03129at 417.409 kb on - strand, within MPMX19_03129at 417.435 kb on + strand, within MPMX19_03129at 417.435 kb on + strand, within MPMX19_03129at 417.436 kb on - strand, within MPMX19_03129at 417.582 kb on + strand, within MPMX19_03129at 417.582 kb on + strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.903 kb on + strandat 417.903 kb on + strandat 417.914 kb on - strandat 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.326 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.821 kb on + strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.822 kb on - strand, within MPMX19_03130at 418.911 kb on + strand, within MPMX19_03130at 418.911 kb on + strand, within MPMX19_03130at 418.911 kb on + strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 418.912 kb on - strand, within MPMX19_03130at 419.011 kb on - strand, within MPMX19_03130at 419.458 kb on + strandat 419.458 kb on + strandat 419.459 kb on - strandat 419.459 kb on - strandat 419.459 kb on - strandat 419.459 kb on - strandat 419.782 kb on + strand, within MPMX19_03131

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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417,030 + MPMX19_03129 0.46 +1.3
417,030 + MPMX19_03129 0.46 -1.1
417,279 + MPMX19_03129 0.65 +0.1
417,279 + MPMX19_03129 0.65 -0.3
417,279 + MPMX19_03129 0.65 +0.5
417,279 + MPMX19_03129 0.65 -1.4
417,279 + MPMX19_03129 0.65 -0.9
417,279 + MPMX19_03129 0.65 -0.1
417,280 - MPMX19_03129 0.65 +1.5
417,280 - MPMX19_03129 0.65 -1.6
417,280 - MPMX19_03129 0.65 -0.5
417,408 + MPMX19_03129 0.74 -0.9
417,408 + MPMX19_03129 0.74 -0.2
417,408 + MPMX19_03129 0.74 -1.4
417,409 - MPMX19_03129 0.74 -1.7
417,409 - MPMX19_03129 0.74 +0.5
417,409 - MPMX19_03129 0.74 -0.3
417,435 + MPMX19_03129 0.76 +0.1
417,435 + MPMX19_03129 0.76 -0.4
417,436 - MPMX19_03129 0.76 +0.4
417,582 + MPMX19_03129 0.87 -0.3
417,582 + MPMX19_03129 0.87 -0.1
417,583 - MPMX19_03129 0.87 -1.1
417,583 - MPMX19_03129 0.87 +0.3
417,583 - MPMX19_03129 0.87 -0.3
417,583 - MPMX19_03129 0.87 -1.1
417,583 - MPMX19_03129 0.87 -1.4
417,583 - MPMX19_03129 0.87 -0.7
417,903 + -0.6
417,903 + -0.9
417,914 - -0.5
418,119 + MPMX19_03130 0.18 -0.9
418,119 + MPMX19_03130 0.18 -0.8
418,119 + MPMX19_03130 0.18 -0.7
418,119 + MPMX19_03130 0.18 +0.7
418,119 + MPMX19_03130 0.18 -1.3
418,119 + MPMX19_03130 0.18 -1.9
418,119 + MPMX19_03130 0.18 +0.0
418,119 + MPMX19_03130 0.18 +0.7
418,119 + MPMX19_03130 0.18 -0.3
418,119 + MPMX19_03130 0.18 +1.5
418,119 + MPMX19_03130 0.18 +0.3
418,119 + MPMX19_03130 0.18 -1.4
418,119 + MPMX19_03130 0.18 -1.3
418,119 + MPMX19_03130 0.18 +0.7
418,119 + MPMX19_03130 0.18 -0.3
418,120 - MPMX19_03130 0.18 +0.3
418,120 - MPMX19_03130 0.18 -1.6
418,120 - MPMX19_03130 0.18 -0.3
418,120 - MPMX19_03130 0.18 +0.5
418,120 - MPMX19_03130 0.18 -2.0
418,120 - MPMX19_03130 0.18 -1.2
418,120 - MPMX19_03130 0.18 +0.5
418,120 - MPMX19_03130 0.18 -2.3
418,120 - MPMX19_03130 0.18 +0.1
418,120 - MPMX19_03130 0.18 -0.4
418,120 - MPMX19_03130 0.18 -1.9
418,120 - MPMX19_03130 0.18 -2.0
418,120 - MPMX19_03130 0.18 -0.0
418,326 + MPMX19_03130 0.33 -0.4
418,329 + MPMX19_03130 0.33 -1.9
418,329 + MPMX19_03130 0.33 -0.3
418,329 + MPMX19_03130 0.33 +1.1
418,329 + MPMX19_03130 0.33 +0.6
418,329 + MPMX19_03130 0.33 +1.0
418,330 - MPMX19_03130 0.33 -0.9
418,330 - MPMX19_03130 0.33 -2.3
418,330 - MPMX19_03130 0.33 +0.6
418,330 - MPMX19_03130 0.33 -0.0
418,330 - MPMX19_03130 0.33 +0.4
418,330 - MPMX19_03130 0.33 -1.4
418,576 - MPMX19_03130 0.50 -0.6
418,576 - MPMX19_03130 0.50 -0.9
418,576 - MPMX19_03130 0.50 -0.7
418,576 - MPMX19_03130 0.50 -0.9
418,576 - MPMX19_03130 0.50 +0.6
418,576 - MPMX19_03130 0.50 -1.2
418,576 - MPMX19_03130 0.50 -1.0
418,576 - MPMX19_03130 0.50 -0.3
418,576 - MPMX19_03130 0.50 +0.9
418,821 + MPMX19_03130 0.68 +1.2
418,821 + MPMX19_03130 0.68 -0.1
418,821 + MPMX19_03130 0.68 -1.4
418,821 + MPMX19_03130 0.68 -0.3
418,821 + MPMX19_03130 0.68 -0.3
418,822 - MPMX19_03130 0.68 -2.7
418,822 - MPMX19_03130 0.68 +1.0
418,822 - MPMX19_03130 0.68 -1.0
418,822 - MPMX19_03130 0.68 -0.7
418,911 + MPMX19_03130 0.74 -0.5
418,911 + MPMX19_03130 0.74 +0.4
418,911 + MPMX19_03130 0.74 -0.6
418,912 - MPMX19_03130 0.74 +0.5
418,912 - MPMX19_03130 0.74 +0.6
418,912 - MPMX19_03130 0.74 -0.6
418,912 - MPMX19_03130 0.74 -0.7
418,912 - MPMX19_03130 0.74 +1.1
418,912 - MPMX19_03130 0.74 -0.6
418,912 - MPMX19_03130 0.74 -0.2
418,912 - MPMX19_03130 0.74 -2.0
418,912 - MPMX19_03130 0.74 -0.6
419,011 - MPMX19_03130 0.81 +1.5
419,458 + -0.9
419,458 + +0.9
419,459 - -1.7
419,459 - -0.3
419,459 - +0.1
419,459 - -1.1
419,782 + MPMX19_03131 0.25 +0.0

Or see this region's nucleotide sequence