Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03088

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03087 and MPMX19_03088 overlap by 4 nucleotidesMPMX19_03088 and MPMX19_03089 are separated by 284 nucleotides MPMX19_03087: MPMX19_03087 - Protein FecR, at 358,310 to 359,257 _03087 MPMX19_03088: MPMX19_03088 - putative RNA polymerase sigma factor FecI, at 359,254 to 359,760 _03088 MPMX19_03089: MPMX19_03089 - Macrolide export protein MacA, at 360,045 to 361,253 _03089 Position (kb) 359 360Strain fitness (log2 ratio) -3 -2 -1 0 1at 358.311 kb on + strandat 358.312 kb on - strandat 358.598 kb on + strand, within MPMX19_03087at 358.599 kb on + strand, within MPMX19_03087at 358.599 kb on + strand, within MPMX19_03087at 358.599 kb on + strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 358.600 kb on - strand, within MPMX19_03087at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.582 kb on + strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.583 kb on - strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.636 kb on + strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.637 kb on - strand, within MPMX19_03088at 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.711 kb on + strandat 359.712 kb on - strandat 359.806 kb on + strandat 359.807 kb on - strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.905 kb on + strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.906 kb on - strandat 359.976 kb on + strandat 359.985 kb on - strandat 360.078 kb on + strandat 360.078 kb on + strandat 360.079 kb on - strandat 360.188 kb on + strand, within MPMX19_03089at 360.188 kb on + strand, within MPMX19_03089at 360.188 kb on + strand, within MPMX19_03089at 360.237 kb on + strand, within MPMX19_03089at 360.237 kb on + strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.238 kb on - strand, within MPMX19_03089at 360.492 kb on + strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.604 kb on - strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.682 kb on - strand, within MPMX19_03089at 360.682 kb on - strand, within MPMX19_03089

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
358,311 + +0.2
358,312 - -0.8
358,598 + MPMX19_03087 0.30 +0.2
358,599 + MPMX19_03087 0.30 +0.2
358,599 + MPMX19_03087 0.30 +0.1
358,599 + MPMX19_03087 0.30 -0.6
358,600 - MPMX19_03087 0.31 +0.6
358,600 - MPMX19_03087 0.31 +0.0
358,600 - MPMX19_03087 0.31 +0.4
358,600 - MPMX19_03087 0.31 -1.7
358,600 - MPMX19_03087 0.31 -1.3
358,600 - MPMX19_03087 0.31 +0.2
358,600 - MPMX19_03087 0.31 -1.6
358,600 - MPMX19_03087 0.31 -0.2
358,600 - MPMX19_03087 0.31 -2.4
359,582 + MPMX19_03088 0.65 +0.9
359,582 + MPMX19_03088 0.65 +0.0
359,582 + MPMX19_03088 0.65 +0.1
359,582 + MPMX19_03088 0.65 -0.2
359,582 + MPMX19_03088 0.65 -1.7
359,583 - MPMX19_03088 0.65 -1.6
359,583 - MPMX19_03088 0.65 -0.4
359,583 - MPMX19_03088 0.65 -1.1
359,583 - MPMX19_03088 0.65 -0.0
359,636 + MPMX19_03088 0.75 -0.2
359,636 + MPMX19_03088 0.75 +0.8
359,636 + MPMX19_03088 0.75 +0.1
359,636 + MPMX19_03088 0.75 -0.4
359,636 + MPMX19_03088 0.75 +0.3
359,636 + MPMX19_03088 0.75 +0.2
359,636 + MPMX19_03088 0.75 -0.6
359,636 + MPMX19_03088 0.75 +0.4
359,636 + MPMX19_03088 0.75 +0.7
359,637 - MPMX19_03088 0.76 +0.1
359,637 - MPMX19_03088 0.76 -0.3
359,637 - MPMX19_03088 0.76 +1.5
359,637 - MPMX19_03088 0.76 -1.8
359,637 - MPMX19_03088 0.76 +0.6
359,637 - MPMX19_03088 0.76 +1.3
359,637 - MPMX19_03088 0.76 +0.2
359,637 - MPMX19_03088 0.76 -0.8
359,637 - MPMX19_03088 0.76 +0.0
359,637 - MPMX19_03088 0.76 -0.6
359,711 + +1.1
359,711 + -1.2
359,711 + +0.4
359,711 + -0.8
359,711 + -0.2
359,711 + -2.0
359,712 - +0.2
359,806 + -0.2
359,807 - -0.2
359,905 + +0.8
359,905 + -1.7
359,905 + +0.4
359,905 + +0.4
359,905 + -0.8
359,905 + -1.4
359,905 + -1.8
359,905 + -1.1
359,905 + -0.3
359,906 - -2.3
359,906 - -1.3
359,906 - -0.5
359,906 - -0.2
359,906 - -0.2
359,906 - +0.2
359,906 - +0.3
359,976 + -0.1
359,985 - +0.4
360,078 + -0.6
360,078 + -0.6
360,079 - +1.3
360,188 + MPMX19_03089 0.12 -1.2
360,188 + MPMX19_03089 0.12 -0.3
360,188 + MPMX19_03089 0.12 +0.6
360,237 + MPMX19_03089 0.16 +1.0
360,237 + MPMX19_03089 0.16 -0.9
360,238 - MPMX19_03089 0.16 +0.0
360,238 - MPMX19_03089 0.16 -0.3
360,238 - MPMX19_03089 0.16 +0.2
360,238 - MPMX19_03089 0.16 -0.5
360,238 - MPMX19_03089 0.16 -1.3
360,492 + MPMX19_03089 0.37 -0.8
360,493 - MPMX19_03089 0.37 -0.8
360,493 - MPMX19_03089 0.37 +0.8
360,493 - MPMX19_03089 0.37 -0.5
360,604 - MPMX19_03089 0.46 -1.4
360,615 + MPMX19_03089 0.47 +0.2
360,615 + MPMX19_03089 0.47 -0.2
360,615 + MPMX19_03089 0.47 -0.2
360,615 + MPMX19_03089 0.47 -0.1
360,615 + MPMX19_03089 0.47 -0.9
360,615 + MPMX19_03089 0.47 -0.2
360,615 + MPMX19_03089 0.47 +0.2
360,615 + MPMX19_03089 0.47 -0.4
360,616 - MPMX19_03089 0.47 -0.9
360,616 - MPMX19_03089 0.47 -0.7
360,616 - MPMX19_03089 0.47 +0.3
360,616 - MPMX19_03089 0.47 +1.0
360,616 - MPMX19_03089 0.47 +0.6
360,616 - MPMX19_03089 0.47 -0.6
360,616 - MPMX19_03089 0.47 -0.6
360,616 - MPMX19_03089 0.47 +1.6
360,616 - MPMX19_03089 0.47 -0.1
360,616 - MPMX19_03089 0.47 +0.2
360,681 + MPMX19_03089 0.53 +0.3
360,681 + MPMX19_03089 0.53 +0.4
360,681 + MPMX19_03089 0.53 +0.3
360,681 + MPMX19_03089 0.53 -2.8
360,681 + MPMX19_03089 0.53 -1.2
360,681 + MPMX19_03089 0.53 -1.8
360,682 - MPMX19_03089 0.53 -0.3
360,682 - MPMX19_03089 0.53 -0.2

Or see this region's nucleotide sequence