Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03087 and MPMX19_03088 overlap by 4 nucleotides MPMX19_03088 and MPMX19_03089 are separated by 284 nucleotides
MPMX19_03087: MPMX19_03087 - Protein FecR, at 358,310 to 359,257
_03087
MPMX19_03088: MPMX19_03088 - putative RNA polymerase sigma factor FecI, at 359,254 to 359,760
_03088
MPMX19_03089: MPMX19_03089 - Macrolide export protein MacA, at 360,045 to 361,253
_03089
Position (kb)
359
360 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 358.311 kb on + strand at 358.312 kb on - strand at 358.598 kb on + strand, within MPMX19_03087 at 358.599 kb on + strand, within MPMX19_03087 at 358.599 kb on + strand, within MPMX19_03087 at 358.599 kb on + strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.712 kb on - strand at 359.806 kb on + strand at 359.807 kb on - strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.976 kb on + strand at 359.985 kb on - strand at 360.078 kb on + strand at 360.078 kb on + strand at 360.079 kb on - strand at 360.188 kb on + strand, within MPMX19_03089 at 360.188 kb on + strand, within MPMX19_03089 at 360.188 kb on + strand, within MPMX19_03089 at 360.237 kb on + strand, within MPMX19_03089 at 360.237 kb on + strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.492 kb on + strand, within MPMX19_03089 at 360.493 kb on - strand, within MPMX19_03089 at 360.493 kb on - strand, within MPMX19_03089 at 360.493 kb on - strand, within MPMX19_03089 at 360.604 kb on - strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.615 kb on + strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.616 kb on - strand, within MPMX19_03089 at 360.681 kb on + strand, within MPMX19_03089 at 360.681 kb on + strand, within MPMX19_03089 at 360.681 kb on + strand, within MPMX19_03089 at 360.681 kb on + strand, within MPMX19_03089 at 360.681 kb on + strand, within MPMX19_03089 at 360.681 kb on + strand, within MPMX19_03089 at 360.682 kb on - strand, within MPMX19_03089 at 360.682 kb on - strand, within MPMX19_03089
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 358,311 + +0.2 358,312 - -0.8 358,598 + MPMX19_03087 0.30 +0.2 358,599 + MPMX19_03087 0.30 +0.2 358,599 + MPMX19_03087 0.30 +0.1 358,599 + MPMX19_03087 0.30 -0.6 358,600 - MPMX19_03087 0.31 +0.6 358,600 - MPMX19_03087 0.31 +0.0 358,600 - MPMX19_03087 0.31 +0.4 358,600 - MPMX19_03087 0.31 -1.7 358,600 - MPMX19_03087 0.31 -1.3 358,600 - MPMX19_03087 0.31 +0.2 358,600 - MPMX19_03087 0.31 -1.6 358,600 - MPMX19_03087 0.31 -0.2 358,600 - MPMX19_03087 0.31 -2.4 359,582 + MPMX19_03088 0.65 +0.9 359,582 + MPMX19_03088 0.65 +0.0 359,582 + MPMX19_03088 0.65 +0.1 359,582 + MPMX19_03088 0.65 -0.2 359,582 + MPMX19_03088 0.65 -1.7 359,583 - MPMX19_03088 0.65 -1.6 359,583 - MPMX19_03088 0.65 -0.4 359,583 - MPMX19_03088 0.65 -1.1 359,583 - MPMX19_03088 0.65 -0.0 359,636 + MPMX19_03088 0.75 -0.2 359,636 + MPMX19_03088 0.75 +0.8 359,636 + MPMX19_03088 0.75 +0.1 359,636 + MPMX19_03088 0.75 -0.4 359,636 + MPMX19_03088 0.75 +0.3 359,636 + MPMX19_03088 0.75 +0.2 359,636 + MPMX19_03088 0.75 -0.6 359,636 + MPMX19_03088 0.75 +0.4 359,636 + MPMX19_03088 0.75 +0.7 359,637 - MPMX19_03088 0.76 +0.1 359,637 - MPMX19_03088 0.76 -0.3 359,637 - MPMX19_03088 0.76 +1.5 359,637 - MPMX19_03088 0.76 -1.8 359,637 - MPMX19_03088 0.76 +0.6 359,637 - MPMX19_03088 0.76 +1.3 359,637 - MPMX19_03088 0.76 +0.2 359,637 - MPMX19_03088 0.76 -0.8 359,637 - MPMX19_03088 0.76 +0.0 359,637 - MPMX19_03088 0.76 -0.6 359,711 + +1.1 359,711 + -1.2 359,711 + +0.4 359,711 + -0.8 359,711 + -0.2 359,711 + -2.0 359,712 - +0.2 359,806 + -0.2 359,807 - -0.2 359,905 + +0.8 359,905 + -1.7 359,905 + +0.4 359,905 + +0.4 359,905 + -0.8 359,905 + -1.4 359,905 + -1.8 359,905 + -1.1 359,905 + -0.3 359,906 - -2.3 359,906 - -1.3 359,906 - -0.5 359,906 - -0.2 359,906 - -0.2 359,906 - +0.2 359,906 - +0.3 359,976 + -0.1 359,985 - +0.4 360,078 + -0.6 360,078 + -0.6 360,079 - +1.3 360,188 + MPMX19_03089 0.12 -1.2 360,188 + MPMX19_03089 0.12 -0.3 360,188 + MPMX19_03089 0.12 +0.6 360,237 + MPMX19_03089 0.16 +1.0 360,237 + MPMX19_03089 0.16 -0.9 360,238 - MPMX19_03089 0.16 +0.0 360,238 - MPMX19_03089 0.16 -0.3 360,238 - MPMX19_03089 0.16 +0.2 360,238 - MPMX19_03089 0.16 -0.5 360,238 - MPMX19_03089 0.16 -1.3 360,492 + MPMX19_03089 0.37 -0.8 360,493 - MPMX19_03089 0.37 -0.8 360,493 - MPMX19_03089 0.37 +0.8 360,493 - MPMX19_03089 0.37 -0.5 360,604 - MPMX19_03089 0.46 -1.4 360,615 + MPMX19_03089 0.47 +0.2 360,615 + MPMX19_03089 0.47 -0.2 360,615 + MPMX19_03089 0.47 -0.2 360,615 + MPMX19_03089 0.47 -0.1 360,615 + MPMX19_03089 0.47 -0.9 360,615 + MPMX19_03089 0.47 -0.2 360,615 + MPMX19_03089 0.47 +0.2 360,615 + MPMX19_03089 0.47 -0.4 360,616 - MPMX19_03089 0.47 -0.9 360,616 - MPMX19_03089 0.47 -0.7 360,616 - MPMX19_03089 0.47 +0.3 360,616 - MPMX19_03089 0.47 +1.0 360,616 - MPMX19_03089 0.47 +0.6 360,616 - MPMX19_03089 0.47 -0.6 360,616 - MPMX19_03089 0.47 -0.6 360,616 - MPMX19_03089 0.47 +1.6 360,616 - MPMX19_03089 0.47 -0.1 360,616 - MPMX19_03089 0.47 +0.2 360,681 + MPMX19_03089 0.53 +0.3 360,681 + MPMX19_03089 0.53 +0.4 360,681 + MPMX19_03089 0.53 +0.3 360,681 + MPMX19_03089 0.53 -2.8 360,681 + MPMX19_03089 0.53 -1.2 360,681 + MPMX19_03089 0.53 -1.8 360,682 - MPMX19_03089 0.53 -0.3 360,682 - MPMX19_03089 0.53 -0.2
Or see this region's nucleotide sequence