Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03062 and MPMX19_03063 are separated by 15 nucleotides MPMX19_03063 and MPMX19_03064 overlap by 4 nucleotides MPMX19_03064 and MPMX19_03065 are separated by 229 nucleotides
MPMX19_03062: MPMX19_03062 - Periplasmic nitrate reductase, at 326,069 to 328,561
_03062
MPMX19_03063: MPMX19_03063 - hypothetical protein, at 328,577 to 329,062
_03063
MPMX19_03064: MPMX19_03064 - Cytochrome c-type protein NapC, at 329,059 to 329,730
_03064
MPMX19_03065: MPMX19_03065 - Nucleoid occlusion protein, at 329,960 to 330,847
_03065
Position (kb) 329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 328.133 kb on + strand, within MPMX19_03062 at 328.133 kb on + strand, within MPMX19_03062 at 328.133 kb on + strand, within MPMX19_03062 at 328.133 kb on + strand, within MPMX19_03062 at 328.134 kb on - strand, within MPMX19_03062 at 328.134 kb on - strand, within MPMX19_03062 at 328.134 kb on - strand, within MPMX19_03062 at 328.176 kb on - strand, within MPMX19_03062 at 328.176 kb on - strand, within MPMX19_03062 at 328.176 kb on - strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.286 kb on + strand, within MPMX19_03062 at 328.287 kb on - strand, within MPMX19_03062 at 328.287 kb on - strand, within MPMX19_03062 at 328.287 kb on - strand, within MPMX19_03062 at 328.287 kb on - strand, within MPMX19_03062 at 328.648 kb on + strand, within MPMX19_03063 at 328.649 kb on - strand, within MPMX19_03063 at 328.649 kb on - strand, within MPMX19_03063 at 328.649 kb on - strand, within MPMX19_03063 at 328.649 kb on - strand, within MPMX19_03063 at 328.763 kb on + strand, within MPMX19_03063 at 328.764 kb on - strand, within MPMX19_03063 at 328.764 kb on - strand, within MPMX19_03063 at 328.805 kb on + strand, within MPMX19_03063 at 328.805 kb on + strand, within MPMX19_03063 at 328.898 kb on + strand, within MPMX19_03063 at 329.258 kb on - strand, within MPMX19_03064 at 329.258 kb on - strand, within MPMX19_03064 at 329.258 kb on - strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.635 kb on - strand, within MPMX19_03064 at 329.635 kb on - strand, within MPMX19_03064 at 329.961 kb on + strand at 329.961 kb on + strand at 329.961 kb on + strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 328,133 + MPMX19_03062 0.83 -0.9 328,133 + MPMX19_03062 0.83 +0.1 328,133 + MPMX19_03062 0.83 -0.4 328,133 + MPMX19_03062 0.83 -0.7 328,134 - MPMX19_03062 0.83 +1.0 328,134 - MPMX19_03062 0.83 -1.2 328,134 - MPMX19_03062 0.83 -1.0 328,176 - MPMX19_03062 0.85 -2.4 328,176 - MPMX19_03062 0.85 -1.4 328,176 - MPMX19_03062 0.85 +0.5 328,286 + MPMX19_03062 0.89 +0.3 328,286 + MPMX19_03062 0.89 -0.0 328,286 + MPMX19_03062 0.89 -0.1 328,286 + MPMX19_03062 0.89 +0.6 328,286 + MPMX19_03062 0.89 -0.7 328,286 + MPMX19_03062 0.89 -1.4 328,286 + MPMX19_03062 0.89 -0.1 328,287 - MPMX19_03062 0.89 +0.2 328,287 - MPMX19_03062 0.89 +0.1 328,287 - MPMX19_03062 0.89 -0.1 328,287 - MPMX19_03062 0.89 +0.1 328,648 + MPMX19_03063 0.15 -0.0 328,649 - MPMX19_03063 0.15 -0.6 328,649 - MPMX19_03063 0.15 +0.3 328,649 - MPMX19_03063 0.15 -0.1 328,649 - MPMX19_03063 0.15 +1.2 328,763 + MPMX19_03063 0.38 -0.1 328,764 - MPMX19_03063 0.38 -0.6 328,764 - MPMX19_03063 0.38 -0.5 328,805 + MPMX19_03063 0.47 -0.8 328,805 + MPMX19_03063 0.47 -0.4 328,898 + MPMX19_03063 0.66 -0.4 329,258 - MPMX19_03064 0.30 -1.2 329,258 - MPMX19_03064 0.30 -0.2 329,258 - MPMX19_03064 0.30 -0.2 329,569 + MPMX19_03064 0.76 -0.1 329,569 + MPMX19_03064 0.76 -0.6 329,569 + MPMX19_03064 0.76 -0.8 329,569 + MPMX19_03064 0.76 +0.8 329,570 - MPMX19_03064 0.76 -1.2 329,570 - MPMX19_03064 0.76 +0.1 329,570 - MPMX19_03064 0.76 +0.2 329,570 - MPMX19_03064 0.76 -1.9 329,570 - MPMX19_03064 0.76 +0.2 329,570 - MPMX19_03064 0.76 -1.2 329,570 - MPMX19_03064 0.76 -0.8 329,635 - MPMX19_03064 0.86 -2.6 329,635 - MPMX19_03064 0.86 -0.9 329,961 + +0.3 329,961 + +0.8 329,961 + -0.2 329,962 - -1.0 329,962 - -1.1 329,962 - +0.1 329,962 - +1.0 329,962 - +0.3
Or see this region's nucleotide sequence