Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03062

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03059 and MPMX19_03060 are separated by 13 nucleotidesMPMX19_03060 and MPMX19_03061 overlap by 14 nucleotidesMPMX19_03061 and MPMX19_03062 are separated by 59 nucleotidesMPMX19_03062 and MPMX19_03063 are separated by 15 nucleotidesMPMX19_03063 and MPMX19_03064 overlap by 4 nucleotides MPMX19_03059: MPMX19_03059 - hypothetical protein, at 324,934 to 325,161 _03059 MPMX19_03060: MPMX19_03060 - Ferredoxin-type protein NapF, at 325,175 to 325,720 _03060 MPMX19_03061: MPMX19_03061 - Chaperone NapD, at 325,707 to 326,009 _03061 MPMX19_03062: MPMX19_03062 - Periplasmic nitrate reductase, at 326,069 to 328,561 _03062 MPMX19_03063: MPMX19_03063 - hypothetical protein, at 328,577 to 329,062 _03063 MPMX19_03064: MPMX19_03064 - Cytochrome c-type protein NapC, at 329,059 to 329,730 _03064 Position (kb) 326 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 325.100 kb on - strand, within MPMX19_03059at 325.191 kb on + strandat 325.191 kb on + strandat 325.191 kb on + strandat 325.192 kb on - strandat 325.192 kb on - strandat 325.206 kb on + strandat 325.207 kb on - strandat 325.290 kb on - strand, within MPMX19_03060at 325.723 kb on + strandat 325.723 kb on + strandat 325.723 kb on + strandat 325.724 kb on - strandat 326.324 kb on + strand, within MPMX19_03062at 326.324 kb on + strand, within MPMX19_03062at 326.324 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.345 kb on + strand, within MPMX19_03062at 326.346 kb on - strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.396 kb on + strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.397 kb on - strand, within MPMX19_03062at 326.540 kb on + strand, within MPMX19_03062at 326.540 kb on + strand, within MPMX19_03062at 326.541 kb on - strand, within MPMX19_03062at 326.541 kb on - strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.669 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.879 kb on + strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 326.880 kb on - strand, within MPMX19_03062at 327.080 kb on + strand, within MPMX19_03062at 327.080 kb on + strand, within MPMX19_03062at 327.080 kb on + strand, within MPMX19_03062at 327.081 kb on - strand, within MPMX19_03062at 327.081 kb on - strand, within MPMX19_03062at 327.081 kb on - strand, within MPMX19_03062at 327.081 kb on - strand, within MPMX19_03062at 327.092 kb on + strand, within MPMX19_03062at 327.092 kb on + strand, within MPMX19_03062at 327.093 kb on - strand, within MPMX19_03062at 327.093 kb on - strand, within MPMX19_03062at 327.093 kb on - strand, within MPMX19_03062at 327.149 kb on + strand, within MPMX19_03062at 327.149 kb on + strand, within MPMX19_03062at 327.149 kb on + strand, within MPMX19_03062at 327.149 kb on + strand, within MPMX19_03062at 327.149 kb on + strand, within MPMX19_03062at 327.149 kb on + strand, within MPMX19_03062at 327.150 kb on - strand, within MPMX19_03062at 327.150 kb on - strand, within MPMX19_03062at 327.150 kb on - strand, within MPMX19_03062at 327.150 kb on - strand, within MPMX19_03062at 327.150 kb on - strand, within MPMX19_03062at 327.150 kb on - strand, within MPMX19_03062at 327.236 kb on + strand, within MPMX19_03062at 327.236 kb on + strand, within MPMX19_03062at 327.236 kb on + strand, within MPMX19_03062at 327.236 kb on + strand, within MPMX19_03062at 327.236 kb on + strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.237 kb on - strand, within MPMX19_03062at 327.449 kb on + strand, within MPMX19_03062at 327.449 kb on + strand, within MPMX19_03062at 327.450 kb on - strand, within MPMX19_03062at 327.450 kb on - strand, within MPMX19_03062at 327.500 kb on + strand, within MPMX19_03062at 327.500 kb on + strand, within MPMX19_03062at 327.500 kb on + strand, within MPMX19_03062at 327.557 kb on + strand, within MPMX19_03062at 327.557 kb on + strand, within MPMX19_03062at 327.557 kb on + strand, within MPMX19_03062at 327.606 kb on - strand, within MPMX19_03062at 327.772 kb on + strand, within MPMX19_03062at 327.773 kb on - strand, within MPMX19_03062at 327.773 kb on - strand, within MPMX19_03062at 327.830 kb on + strand, within MPMX19_03062at 327.861 kb on - strand, within MPMX19_03062at 327.861 kb on - strand, within MPMX19_03062at 327.911 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.944 kb on + strand, within MPMX19_03062at 327.945 kb on - strand, within MPMX19_03062at 327.945 kb on - strand, within MPMX19_03062at 327.945 kb on - strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.971 kb on + strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 327.972 kb on - strand, within MPMX19_03062at 328.023 kb on - strand, within MPMX19_03062at 328.023 kb on - strand, within MPMX19_03062at 328.023 kb on - strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.133 kb on + strand, within MPMX19_03062at 328.134 kb on - strand, within MPMX19_03062at 328.134 kb on - strand, within MPMX19_03062at 328.134 kb on - strand, within MPMX19_03062at 328.176 kb on - strand, within MPMX19_03062at 328.176 kb on - strand, within MPMX19_03062at 328.176 kb on - strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.286 kb on + strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.287 kb on - strand, within MPMX19_03062at 328.648 kb on + strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.649 kb on - strand, within MPMX19_03063at 328.763 kb on + strand, within MPMX19_03063at 328.764 kb on - strand, within MPMX19_03063at 328.764 kb on - strand, within MPMX19_03063at 328.805 kb on + strand, within MPMX19_03063at 328.805 kb on + strand, within MPMX19_03063at 328.898 kb on + strand, within MPMX19_03063at 329.258 kb on - strand, within MPMX19_03064at 329.258 kb on - strand, within MPMX19_03064at 329.258 kb on - strand, within MPMX19_03064

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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325,100 - MPMX19_03059 0.73 -0.6
325,191 + -1.1
325,191 + +0.3
325,191 + -1.2
325,192 - -1.1
325,192 - +0.3
325,206 + -2.1
325,207 - -1.1
325,290 - MPMX19_03060 0.21 -0.3
325,723 + -1.6
325,723 + -1.7
325,723 + -1.9
325,724 - -0.5
326,324 + MPMX19_03062 0.10 -0.0
326,324 + MPMX19_03062 0.10 +0.4
326,324 + MPMX19_03062 0.10 +0.5
326,345 + MPMX19_03062 0.11 -0.2
326,345 + MPMX19_03062 0.11 +1.3
326,345 + MPMX19_03062 0.11 -1.6
326,345 + MPMX19_03062 0.11 -0.2
326,346 - MPMX19_03062 0.11 +0.1
326,396 + MPMX19_03062 0.13 -1.5
326,396 + MPMX19_03062 0.13 -0.8
326,396 + MPMX19_03062 0.13 -1.2
326,396 + MPMX19_03062 0.13 -0.4
326,397 - MPMX19_03062 0.13 -0.0
326,397 - MPMX19_03062 0.13 -1.4
326,397 - MPMX19_03062 0.13 -2.4
326,397 - MPMX19_03062 0.13 -1.4
326,540 + MPMX19_03062 0.19 -0.6
326,540 + MPMX19_03062 0.19 +0.1
326,541 - MPMX19_03062 0.19 +1.2
326,541 - MPMX19_03062 0.19 -0.2
326,669 + MPMX19_03062 0.24 +0.3
326,669 + MPMX19_03062 0.24 -1.1
326,669 + MPMX19_03062 0.24 +0.2
326,879 + MPMX19_03062 0.32 +0.2
326,879 + MPMX19_03062 0.32 -1.9
326,879 + MPMX19_03062 0.32 -1.0
326,879 + MPMX19_03062 0.32 -0.4
326,879 + MPMX19_03062 0.32 +0.3
326,879 + MPMX19_03062 0.32 +0.3
326,879 + MPMX19_03062 0.32 -1.5
326,879 + MPMX19_03062 0.32 -0.2
326,880 - MPMX19_03062 0.33 -1.0
326,880 - MPMX19_03062 0.33 -0.8
326,880 - MPMX19_03062 0.33 +1.2
326,880 - MPMX19_03062 0.33 -1.4
326,880 - MPMX19_03062 0.33 -0.7
327,080 + MPMX19_03062 0.41 +1.7
327,080 + MPMX19_03062 0.41 -0.8
327,080 + MPMX19_03062 0.41 -0.8
327,081 - MPMX19_03062 0.41 +0.5
327,081 - MPMX19_03062 0.41 +1.0
327,081 - MPMX19_03062 0.41 -0.2
327,081 - MPMX19_03062 0.41 -0.0
327,092 + MPMX19_03062 0.41 -0.0
327,092 + MPMX19_03062 0.41 -2.2
327,093 - MPMX19_03062 0.41 +0.5
327,093 - MPMX19_03062 0.41 -0.2
327,093 - MPMX19_03062 0.41 +1.1
327,149 + MPMX19_03062 0.43 +1.4
327,149 + MPMX19_03062 0.43 +0.5
327,149 + MPMX19_03062 0.43 -0.7
327,149 + MPMX19_03062 0.43 +1.8
327,149 + MPMX19_03062 0.43 -1.7
327,149 + MPMX19_03062 0.43 -1.6
327,150 - MPMX19_03062 0.43 -0.4
327,150 - MPMX19_03062 0.43 +2.0
327,150 - MPMX19_03062 0.43 -1.5
327,150 - MPMX19_03062 0.43 +0.4
327,150 - MPMX19_03062 0.43 +0.3
327,150 - MPMX19_03062 0.43 -0.8
327,236 + MPMX19_03062 0.47 -0.6
327,236 + MPMX19_03062 0.47 -0.0
327,236 + MPMX19_03062 0.47 -1.3
327,236 + MPMX19_03062 0.47 -1.6
327,236 + MPMX19_03062 0.47 -1.2
327,237 - MPMX19_03062 0.47 -1.2
327,237 - MPMX19_03062 0.47 -1.3
327,237 - MPMX19_03062 0.47 -0.4
327,237 - MPMX19_03062 0.47 +1.1
327,237 - MPMX19_03062 0.47 +1.2
327,237 - MPMX19_03062 0.47 -0.7
327,237 - MPMX19_03062 0.47 -0.4
327,237 - MPMX19_03062 0.47 -0.0
327,237 - MPMX19_03062 0.47 +0.3
327,237 - MPMX19_03062 0.47 -1.2
327,449 + MPMX19_03062 0.55 -0.7
327,449 + MPMX19_03062 0.55 -1.2
327,450 - MPMX19_03062 0.55 -1.2
327,450 - MPMX19_03062 0.55 +0.2
327,500 + MPMX19_03062 0.57 +1.0
327,500 + MPMX19_03062 0.57 +0.8
327,500 + MPMX19_03062 0.57 -1.2
327,557 + MPMX19_03062 0.60 +0.1
327,557 + MPMX19_03062 0.60 +0.5
327,557 + MPMX19_03062 0.60 -0.6
327,606 - MPMX19_03062 0.62 -0.8
327,772 + MPMX19_03062 0.68 +1.2
327,773 - MPMX19_03062 0.68 -1.6
327,773 - MPMX19_03062 0.68 -0.6
327,830 + MPMX19_03062 0.71 +0.2
327,861 - MPMX19_03062 0.72 -1.4
327,861 - MPMX19_03062 0.72 +1.8
327,911 + MPMX19_03062 0.74 +0.5
327,944 + MPMX19_03062 0.75 +0.8
327,944 + MPMX19_03062 0.75 +0.8
327,944 + MPMX19_03062 0.75 -0.6
327,944 + MPMX19_03062 0.75 -0.6
327,944 + MPMX19_03062 0.75 -0.2
327,944 + MPMX19_03062 0.75 +0.8
327,944 + MPMX19_03062 0.75 -0.4
327,945 - MPMX19_03062 0.75 +0.8
327,945 - MPMX19_03062 0.75 -0.0
327,945 - MPMX19_03062 0.75 -0.5
327,971 + MPMX19_03062 0.76 -1.0
327,971 + MPMX19_03062 0.76 +0.8
327,971 + MPMX19_03062 0.76 -0.2
327,971 + MPMX19_03062 0.76 -0.8
327,972 - MPMX19_03062 0.76 -0.5
327,972 - MPMX19_03062 0.76 -0.0
327,972 - MPMX19_03062 0.76 -0.6
327,972 - MPMX19_03062 0.76 -2.6
328,023 - MPMX19_03062 0.78 -0.7
328,023 - MPMX19_03062 0.78 +0.6
328,023 - MPMX19_03062 0.78 -1.0
328,133 + MPMX19_03062 0.83 -0.9
328,133 + MPMX19_03062 0.83 +0.1
328,133 + MPMX19_03062 0.83 -0.4
328,133 + MPMX19_03062 0.83 -0.7
328,134 - MPMX19_03062 0.83 +1.0
328,134 - MPMX19_03062 0.83 -1.2
328,134 - MPMX19_03062 0.83 -1.0
328,176 - MPMX19_03062 0.85 -2.4
328,176 - MPMX19_03062 0.85 -1.4
328,176 - MPMX19_03062 0.85 +0.5
328,286 + MPMX19_03062 0.89 +0.3
328,286 + MPMX19_03062 0.89 -0.0
328,286 + MPMX19_03062 0.89 -0.1
328,286 + MPMX19_03062 0.89 +0.6
328,286 + MPMX19_03062 0.89 -0.7
328,286 + MPMX19_03062 0.89 -1.4
328,286 + MPMX19_03062 0.89 -0.1
328,287 - MPMX19_03062 0.89 +0.2
328,287 - MPMX19_03062 0.89 +0.1
328,287 - MPMX19_03062 0.89 -0.1
328,287 - MPMX19_03062 0.89 +0.1
328,648 + MPMX19_03063 0.15 -0.0
328,649 - MPMX19_03063 0.15 -0.6
328,649 - MPMX19_03063 0.15 +0.3
328,649 - MPMX19_03063 0.15 -0.1
328,649 - MPMX19_03063 0.15 +1.2
328,763 + MPMX19_03063 0.38 -0.1
328,764 - MPMX19_03063 0.38 -0.6
328,764 - MPMX19_03063 0.38 -0.5
328,805 + MPMX19_03063 0.47 -0.8
328,805 + MPMX19_03063 0.47 -0.4
328,898 + MPMX19_03063 0.66 -0.4
329,258 - MPMX19_03064 0.30 -1.2
329,258 - MPMX19_03064 0.30 -0.2
329,258 - MPMX19_03064 0.30 -0.2

Or see this region's nucleotide sequence