Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03053

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03052 and MPMX19_03053 overlap by 1 nucleotidesMPMX19_03053 and MPMX19_03054 overlap by 1 nucleotidesMPMX19_03054 and MPMX19_03055 overlap by 4 nucleotides MPMX19_03052: MPMX19_03052 - hypothetical protein, at 315,567 to 316,577 _03052 MPMX19_03053: MPMX19_03053 - Copper-binding lipoprotein NosL, at 316,577 to 317,119 _03053 MPMX19_03054: MPMX19_03054 - putative ABC transporter permease protein NosY, at 317,119 to 317,943 _03054 MPMX19_03055: MPMX19_03055 - putative ABC transporter ATP-binding protein NosF, at 317,940 to 318,866 _03055 Position (kb) 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 315.628 kb on + strandat 315.629 kb on - strandat 315.809 kb on - strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.711 kb on - strand, within MPMX19_03053at 316.758 kb on + strand, within MPMX19_03053at 316.758 kb on + strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 317.288 kb on + strand, within MPMX19_03054at 317.381 kb on + strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.666 kb on + strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.737 kb on + strand, within MPMX19_03054at 317.737 kb on + strand, within MPMX19_03054at 317.738 kb on - strand, within MPMX19_03054at 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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315,628 + -0.6
315,629 - -0.9
315,809 - MPMX19_03052 0.24 +0.2
316,006 + MPMX19_03052 0.43 +0.3
316,006 + MPMX19_03052 0.43 +1.2
316,006 + MPMX19_03052 0.43 -2.1
316,006 + MPMX19_03052 0.43 +0.4
316,006 + MPMX19_03052 0.43 +0.2
316,006 + MPMX19_03052 0.43 +1.1
316,006 + MPMX19_03052 0.43 +0.5
316,006 + MPMX19_03052 0.43 -0.1
316,007 - MPMX19_03052 0.44 +0.0
316,007 - MPMX19_03052 0.44 +1.1
316,007 - MPMX19_03052 0.44 -0.9
316,007 - MPMX19_03052 0.44 -0.6
316,007 - MPMX19_03052 0.44 -0.1
316,007 - MPMX19_03052 0.44 -0.1
316,007 - MPMX19_03052 0.44 -0.2
316,174 + MPMX19_03052 0.60 -0.1
316,174 + MPMX19_03052 0.60 +0.4
316,174 + MPMX19_03052 0.60 -1.6
316,174 + MPMX19_03052 0.60 -1.6
316,174 + MPMX19_03052 0.60 -0.7
316,174 + MPMX19_03052 0.60 +0.2
316,174 + MPMX19_03052 0.60 +0.1
316,174 + MPMX19_03052 0.60 -0.3
316,174 + MPMX19_03052 0.60 -0.5
316,175 - MPMX19_03052 0.60 +0.3
316,175 - MPMX19_03052 0.60 +0.2
316,175 - MPMX19_03052 0.60 -1.8
316,175 - MPMX19_03052 0.60 +0.0
316,175 - MPMX19_03052 0.60 -0.8
316,175 - MPMX19_03052 0.60 -0.2
316,711 - MPMX19_03053 0.25 +0.4
316,758 + MPMX19_03053 0.33 -1.8
316,758 + MPMX19_03053 0.33 +0.6
316,759 - MPMX19_03053 0.34 -0.1
316,759 - MPMX19_03053 0.34 +0.1
316,759 - MPMX19_03053 0.34 +2.0
316,759 - MPMX19_03053 0.34 +0.9
316,759 - MPMX19_03053 0.34 -0.5
316,759 - MPMX19_03053 0.34 -1.8
316,759 - MPMX19_03053 0.34 -0.4
316,759 - MPMX19_03053 0.34 -0.8
316,759 - MPMX19_03053 0.34 -1.2
316,836 + MPMX19_03053 0.48 +0.0
316,836 + MPMX19_03053 0.48 -1.0
316,836 + MPMX19_03053 0.48 -0.5
316,836 + MPMX19_03053 0.48 +0.9
316,836 + MPMX19_03053 0.48 -0.0
316,836 + MPMX19_03053 0.48 -0.3
316,836 + MPMX19_03053 0.48 +1.2
316,836 + MPMX19_03053 0.48 +0.3
316,836 + MPMX19_03053 0.48 +0.5
316,837 - MPMX19_03053 0.48 -1.8
316,837 - MPMX19_03053 0.48 -1.2
316,837 - MPMX19_03053 0.48 -0.3
316,837 - MPMX19_03053 0.48 +0.7
316,837 - MPMX19_03053 0.48 +1.0
316,837 - MPMX19_03053 0.48 +0.6
316,837 - MPMX19_03053 0.48 +0.2
316,837 - MPMX19_03053 0.48 -1.1
316,837 - MPMX19_03053 0.48 -2.1
316,837 - MPMX19_03053 0.48 -0.4
316,837 - MPMX19_03053 0.48 +1.0
316,983 + MPMX19_03053 0.75 +0.7
316,983 + MPMX19_03053 0.75 +1.0
316,983 + MPMX19_03053 0.75 -0.3
316,983 + MPMX19_03053 0.75 +0.5
316,984 - MPMX19_03053 0.75 +0.0
316,984 - MPMX19_03053 0.75 +0.4
317,288 + MPMX19_03054 0.20 +0.8
317,381 + MPMX19_03054 0.32 -2.0
317,382 - MPMX19_03054 0.32 +0.2
317,382 - MPMX19_03054 0.32 -0.6
317,462 + MPMX19_03054 0.42 -0.6
317,462 + MPMX19_03054 0.42 -0.5
317,666 + MPMX19_03054 0.66 +0.4
317,667 - MPMX19_03054 0.66 -0.2
317,667 - MPMX19_03054 0.66 -0.7
317,667 - MPMX19_03054 0.66 +0.4
317,737 + MPMX19_03054 0.75 -0.1
317,737 + MPMX19_03054 0.75 +0.2
317,738 - MPMX19_03054 0.75 -0.5
317,974 + +0.4
317,974 + -0.2
317,974 + -0.4
317,974 + -0.7
317,974 + -1.2
317,974 + +0.4
317,974 + -0.1
317,974 + -0.4
317,974 + -0.9
317,974 + +0.4
317,974 + -0.9
317,974 + -1.3
317,974 + +1.0
317,974 + -1.0
317,974 + -1.8
317,974 + +0.5
317,974 + -1.2
317,975 - -2.2
317,975 - -0.5
317,975 - +0.4
317,975 - +1.9
317,975 - +0.3
317,975 - +0.3
317,975 - +0.3
317,975 - -0.1
317,975 - -1.1
317,975 - -0.9
317,975 - -0.8
317,975 - -0.2
317,975 - -1.1
317,975 - +0.8
317,975 - -1.6
317,975 - -0.7
317,975 - -2.3
317,975 - -0.8
317,975 - +0.9
317,975 - -1.2
317,975 - +0.9
317,975 - -1.2
317,975 - -1.4

Or see this region's nucleotide sequence