Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03050 and MPMX19_03051 are separated by 50 nucleotides MPMX19_03051 and MPMX19_03052 are separated by 17 nucleotides MPMX19_03052 and MPMX19_03053 overlap by 1 nucleotides MPMX19_03053 and MPMX19_03054 overlap by 1 nucleotides
MPMX19_03050: MPMX19_03050 - hypothetical protein, at 314,420 to 315,331
_03050
MPMX19_03051: MPMX19_03051 - Sec-independent protein translocase protein TatA, at 315,382 to 315,549
_03051
MPMX19_03052: MPMX19_03052 - hypothetical protein, at 315,567 to 316,577
_03052
MPMX19_03053: MPMX19_03053 - Copper-binding lipoprotein NosL, at 316,577 to 317,119
_03053
MPMX19_03054: MPMX19_03054 - putative ABC transporter permease protein NosY, at 317,119 to 317,943
_03054
Position (kb)
315
316
317 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.792 kb on + strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.793 kb on - strand, within MPMX19_03050 at 314.967 kb on - strand, within MPMX19_03050 at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.296 kb on + strand at 315.297 kb on - strand at 315.297 kb on - strand at 315.297 kb on - strand at 315.297 kb on - strand at 315.628 kb on + strand at 315.629 kb on - strand at 315.809 kb on - strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.006 kb on + strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.007 kb on - strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.174 kb on + strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.175 kb on - strand, within MPMX19_03052 at 316.711 kb on - strand, within MPMX19_03053 at 316.758 kb on + strand, within MPMX19_03053 at 316.758 kb on + strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.759 kb on - strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.836 kb on + strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.837 kb on - strand, within MPMX19_03053 at 316.983 kb on + strand, within MPMX19_03053 at 316.983 kb on + strand, within MPMX19_03053 at 316.983 kb on + strand, within MPMX19_03053 at 316.983 kb on + strand, within MPMX19_03053 at 316.984 kb on - strand, within MPMX19_03053 at 316.984 kb on - strand, within MPMX19_03053 at 317.288 kb on + strand, within MPMX19_03054 at 317.381 kb on + strand, within MPMX19_03054 at 317.382 kb on - strand, within MPMX19_03054 at 317.382 kb on - strand, within MPMX19_03054 at 317.462 kb on + strand, within MPMX19_03054 at 317.462 kb on + strand, within MPMX19_03054
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 314,792 + MPMX19_03050 0.41 +1.2 314,792 + MPMX19_03050 0.41 -0.3 314,792 + MPMX19_03050 0.41 +1.7 314,792 + MPMX19_03050 0.41 -0.3 314,792 + MPMX19_03050 0.41 -0.7 314,792 + MPMX19_03050 0.41 +0.2 314,792 + MPMX19_03050 0.41 +0.0 314,792 + MPMX19_03050 0.41 -1.7 314,793 - MPMX19_03050 0.41 -1.2 314,793 - MPMX19_03050 0.41 +1.1 314,793 - MPMX19_03050 0.41 -1.4 314,793 - MPMX19_03050 0.41 -0.8 314,967 - MPMX19_03050 0.60 +0.0 315,296 + +0.3 315,296 + -0.7 315,296 + +0.9 315,296 + -0.8 315,296 + +0.3 315,296 + -1.1 315,297 - +0.7 315,297 - +0.5 315,297 - -1.6 315,297 - -0.9 315,628 + -0.6 315,629 - -0.9 315,809 - MPMX19_03052 0.24 +0.2 316,006 + MPMX19_03052 0.43 +0.3 316,006 + MPMX19_03052 0.43 +1.2 316,006 + MPMX19_03052 0.43 -2.1 316,006 + MPMX19_03052 0.43 +0.4 316,006 + MPMX19_03052 0.43 +0.2 316,006 + MPMX19_03052 0.43 +1.1 316,006 + MPMX19_03052 0.43 +0.5 316,006 + MPMX19_03052 0.43 -0.1 316,007 - MPMX19_03052 0.44 +0.0 316,007 - MPMX19_03052 0.44 +1.1 316,007 - MPMX19_03052 0.44 -0.9 316,007 - MPMX19_03052 0.44 -0.6 316,007 - MPMX19_03052 0.44 -0.1 316,007 - MPMX19_03052 0.44 -0.1 316,007 - MPMX19_03052 0.44 -0.2 316,174 + MPMX19_03052 0.60 -0.1 316,174 + MPMX19_03052 0.60 +0.4 316,174 + MPMX19_03052 0.60 -1.6 316,174 + MPMX19_03052 0.60 -1.6 316,174 + MPMX19_03052 0.60 -0.7 316,174 + MPMX19_03052 0.60 +0.2 316,174 + MPMX19_03052 0.60 +0.1 316,174 + MPMX19_03052 0.60 -0.3 316,174 + MPMX19_03052 0.60 -0.5 316,175 - MPMX19_03052 0.60 +0.3 316,175 - MPMX19_03052 0.60 +0.2 316,175 - MPMX19_03052 0.60 -1.8 316,175 - MPMX19_03052 0.60 +0.0 316,175 - MPMX19_03052 0.60 -0.8 316,175 - MPMX19_03052 0.60 -0.2 316,711 - MPMX19_03053 0.25 +0.4 316,758 + MPMX19_03053 0.33 -1.8 316,758 + MPMX19_03053 0.33 +0.6 316,759 - MPMX19_03053 0.34 -0.1 316,759 - MPMX19_03053 0.34 +0.1 316,759 - MPMX19_03053 0.34 +2.0 316,759 - MPMX19_03053 0.34 +0.9 316,759 - MPMX19_03053 0.34 -0.5 316,759 - MPMX19_03053 0.34 -1.8 316,759 - MPMX19_03053 0.34 -0.4 316,759 - MPMX19_03053 0.34 -0.8 316,759 - MPMX19_03053 0.34 -1.2 316,836 + MPMX19_03053 0.48 +0.0 316,836 + MPMX19_03053 0.48 -1.0 316,836 + MPMX19_03053 0.48 -0.5 316,836 + MPMX19_03053 0.48 +0.9 316,836 + MPMX19_03053 0.48 -0.0 316,836 + MPMX19_03053 0.48 -0.3 316,836 + MPMX19_03053 0.48 +1.2 316,836 + MPMX19_03053 0.48 +0.3 316,836 + MPMX19_03053 0.48 +0.5 316,837 - MPMX19_03053 0.48 -1.8 316,837 - MPMX19_03053 0.48 -1.2 316,837 - MPMX19_03053 0.48 -0.3 316,837 - MPMX19_03053 0.48 +0.7 316,837 - MPMX19_03053 0.48 +1.0 316,837 - MPMX19_03053 0.48 +0.6 316,837 - MPMX19_03053 0.48 +0.2 316,837 - MPMX19_03053 0.48 -1.1 316,837 - MPMX19_03053 0.48 -2.1 316,837 - MPMX19_03053 0.48 -0.4 316,837 - MPMX19_03053 0.48 +1.0 316,983 + MPMX19_03053 0.75 +0.7 316,983 + MPMX19_03053 0.75 +1.0 316,983 + MPMX19_03053 0.75 -0.3 316,983 + MPMX19_03053 0.75 +0.5 316,984 - MPMX19_03053 0.75 +0.0 316,984 - MPMX19_03053 0.75 +0.4 317,288 + MPMX19_03054 0.20 +0.8 317,381 + MPMX19_03054 0.32 -2.0 317,382 - MPMX19_03054 0.32 +0.2 317,382 - MPMX19_03054 0.32 -0.6 317,462 + MPMX19_03054 0.42 -0.6 317,462 + MPMX19_03054 0.42 -0.5
Or see this region's nucleotide sequence