Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03052

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03050 and MPMX19_03051 are separated by 50 nucleotidesMPMX19_03051 and MPMX19_03052 are separated by 17 nucleotidesMPMX19_03052 and MPMX19_03053 overlap by 1 nucleotidesMPMX19_03053 and MPMX19_03054 overlap by 1 nucleotides MPMX19_03050: MPMX19_03050 - hypothetical protein, at 314,420 to 315,331 _03050 MPMX19_03051: MPMX19_03051 - Sec-independent protein translocase protein TatA, at 315,382 to 315,549 _03051 MPMX19_03052: MPMX19_03052 - hypothetical protein, at 315,567 to 316,577 _03052 MPMX19_03053: MPMX19_03053 - Copper-binding lipoprotein NosL, at 316,577 to 317,119 _03053 MPMX19_03054: MPMX19_03054 - putative ABC transporter permease protein NosY, at 317,119 to 317,943 _03054 Position (kb) 315 316 317Strain fitness (log2 ratio) -2 -1 0 1 2at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.792 kb on + strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.793 kb on - strand, within MPMX19_03050at 314.967 kb on - strand, within MPMX19_03050at 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.296 kb on + strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.297 kb on - strandat 315.628 kb on + strandat 315.629 kb on - strandat 315.809 kb on - strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.006 kb on + strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.007 kb on - strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.174 kb on + strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.175 kb on - strand, within MPMX19_03052at 316.711 kb on - strand, within MPMX19_03053at 316.758 kb on + strand, within MPMX19_03053at 316.758 kb on + strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.759 kb on - strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.836 kb on + strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.837 kb on - strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 317.288 kb on + strand, within MPMX19_03054at 317.381 kb on + strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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314,792 + MPMX19_03050 0.41 +1.2
314,792 + MPMX19_03050 0.41 -0.3
314,792 + MPMX19_03050 0.41 +1.7
314,792 + MPMX19_03050 0.41 -0.3
314,792 + MPMX19_03050 0.41 -0.7
314,792 + MPMX19_03050 0.41 +0.2
314,792 + MPMX19_03050 0.41 +0.0
314,792 + MPMX19_03050 0.41 -1.7
314,793 - MPMX19_03050 0.41 -1.2
314,793 - MPMX19_03050 0.41 +1.1
314,793 - MPMX19_03050 0.41 -1.4
314,793 - MPMX19_03050 0.41 -0.8
314,967 - MPMX19_03050 0.60 +0.0
315,296 + +0.3
315,296 + -0.7
315,296 + +0.9
315,296 + -0.8
315,296 + +0.3
315,296 + -1.1
315,297 - +0.7
315,297 - +0.5
315,297 - -1.6
315,297 - -0.9
315,628 + -0.6
315,629 - -0.9
315,809 - MPMX19_03052 0.24 +0.2
316,006 + MPMX19_03052 0.43 +0.3
316,006 + MPMX19_03052 0.43 +1.2
316,006 + MPMX19_03052 0.43 -2.1
316,006 + MPMX19_03052 0.43 +0.4
316,006 + MPMX19_03052 0.43 +0.2
316,006 + MPMX19_03052 0.43 +1.1
316,006 + MPMX19_03052 0.43 +0.5
316,006 + MPMX19_03052 0.43 -0.1
316,007 - MPMX19_03052 0.44 +0.0
316,007 - MPMX19_03052 0.44 +1.1
316,007 - MPMX19_03052 0.44 -0.9
316,007 - MPMX19_03052 0.44 -0.6
316,007 - MPMX19_03052 0.44 -0.1
316,007 - MPMX19_03052 0.44 -0.1
316,007 - MPMX19_03052 0.44 -0.2
316,174 + MPMX19_03052 0.60 -0.1
316,174 + MPMX19_03052 0.60 +0.4
316,174 + MPMX19_03052 0.60 -1.6
316,174 + MPMX19_03052 0.60 -1.6
316,174 + MPMX19_03052 0.60 -0.7
316,174 + MPMX19_03052 0.60 +0.2
316,174 + MPMX19_03052 0.60 +0.1
316,174 + MPMX19_03052 0.60 -0.3
316,174 + MPMX19_03052 0.60 -0.5
316,175 - MPMX19_03052 0.60 +0.3
316,175 - MPMX19_03052 0.60 +0.2
316,175 - MPMX19_03052 0.60 -1.8
316,175 - MPMX19_03052 0.60 +0.0
316,175 - MPMX19_03052 0.60 -0.8
316,175 - MPMX19_03052 0.60 -0.2
316,711 - MPMX19_03053 0.25 +0.4
316,758 + MPMX19_03053 0.33 -1.8
316,758 + MPMX19_03053 0.33 +0.6
316,759 - MPMX19_03053 0.34 -0.1
316,759 - MPMX19_03053 0.34 +0.1
316,759 - MPMX19_03053 0.34 +2.0
316,759 - MPMX19_03053 0.34 +0.9
316,759 - MPMX19_03053 0.34 -0.5
316,759 - MPMX19_03053 0.34 -1.8
316,759 - MPMX19_03053 0.34 -0.4
316,759 - MPMX19_03053 0.34 -0.8
316,759 - MPMX19_03053 0.34 -1.2
316,836 + MPMX19_03053 0.48 +0.0
316,836 + MPMX19_03053 0.48 -1.0
316,836 + MPMX19_03053 0.48 -0.5
316,836 + MPMX19_03053 0.48 +0.9
316,836 + MPMX19_03053 0.48 -0.0
316,836 + MPMX19_03053 0.48 -0.3
316,836 + MPMX19_03053 0.48 +1.2
316,836 + MPMX19_03053 0.48 +0.3
316,836 + MPMX19_03053 0.48 +0.5
316,837 - MPMX19_03053 0.48 -1.8
316,837 - MPMX19_03053 0.48 -1.2
316,837 - MPMX19_03053 0.48 -0.3
316,837 - MPMX19_03053 0.48 +0.7
316,837 - MPMX19_03053 0.48 +1.0
316,837 - MPMX19_03053 0.48 +0.6
316,837 - MPMX19_03053 0.48 +0.2
316,837 - MPMX19_03053 0.48 -1.1
316,837 - MPMX19_03053 0.48 -2.1
316,837 - MPMX19_03053 0.48 -0.4
316,837 - MPMX19_03053 0.48 +1.0
316,983 + MPMX19_03053 0.75 +0.7
316,983 + MPMX19_03053 0.75 +1.0
316,983 + MPMX19_03053 0.75 -0.3
316,983 + MPMX19_03053 0.75 +0.5
316,984 - MPMX19_03053 0.75 +0.0
316,984 - MPMX19_03053 0.75 +0.4
317,288 + MPMX19_03054 0.20 +0.8
317,381 + MPMX19_03054 0.32 -2.0
317,382 - MPMX19_03054 0.32 +0.2
317,382 - MPMX19_03054 0.32 -0.6
317,462 + MPMX19_03054 0.42 -0.6
317,462 + MPMX19_03054 0.42 -0.5

Or see this region's nucleotide sequence