Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03027 and MPMX19_03028 overlap by 1 nucleotides MPMX19_03028 and MPMX19_03029 are separated by 258 nucleotides
MPMX19_03027: MPMX19_03027 - Xylose transport system permease protein XylH, at 292,380 to 293,702
_03027
MPMX19_03028: MPMX19_03028 - D-xylose-binding periplasmic protein, at 293,702 to 294,760
_03028
MPMX19_03029: MPMX19_03029 - Xylose isomerase, at 295,019 to 296,341
_03029
Position (kb)
293
294
295 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 292.765 kb on + strand, within MPMX19_03027 at 292.765 kb on + strand, within MPMX19_03027 at 293.254 kb on + strand, within MPMX19_03027 at 294.183 kb on + strand, within MPMX19_03028 at 294.183 kb on + strand, within MPMX19_03028 at 294.183 kb on + strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.408 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.697 kb on + strand at 294.697 kb on + strand at 294.697 kb on + strand at 294.697 kb on + strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.977 kb on + strand at 294.977 kb on + strand at 294.978 kb on - strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.027 kb on - strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.051 kb on - strand at 295.174 kb on - strand, within MPMX19_03029 at 295.563 kb on + strand, within MPMX19_03029 at 295.563 kb on + strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.581 kb on + strand, within MPMX19_03029 at 295.582 kb on - strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.606 kb on - strand, within MPMX19_03029 at 295.606 kb on - strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 292,765 + MPMX19_03027 0.29 -0.4 292,765 + MPMX19_03027 0.29 +0.0 293,254 + MPMX19_03027 0.66 -0.6 294,183 + MPMX19_03028 0.45 -0.0 294,183 + MPMX19_03028 0.45 +0.7 294,183 + MPMX19_03028 0.45 +0.6 294,184 - MPMX19_03028 0.46 -1.4 294,184 - MPMX19_03028 0.46 -0.0 294,184 - MPMX19_03028 0.46 +0.9 294,184 - MPMX19_03028 0.46 +0.3 294,300 + MPMX19_03028 0.56 -0.3 294,300 + MPMX19_03028 0.56 +0.7 294,300 + MPMX19_03028 0.56 -0.3 294,300 + MPMX19_03028 0.56 +0.4 294,300 + MPMX19_03028 0.56 +0.3 294,300 + MPMX19_03028 0.56 -0.8 294,300 + MPMX19_03028 0.56 +0.6 294,301 - MPMX19_03028 0.57 -1.1 294,301 - MPMX19_03028 0.57 -0.4 294,301 - MPMX19_03028 0.57 -1.6 294,301 - MPMX19_03028 0.57 +1.2 294,301 - MPMX19_03028 0.57 -0.1 294,301 - MPMX19_03028 0.57 +0.0 294,301 - MPMX19_03028 0.57 -2.1 294,301 - MPMX19_03028 0.57 -0.8 294,301 - MPMX19_03028 0.57 -0.2 294,301 - MPMX19_03028 0.57 -0.1 294,375 + MPMX19_03028 0.64 -3.3 294,375 + MPMX19_03028 0.64 -0.4 294,375 + MPMX19_03028 0.64 -0.3 294,375 + MPMX19_03028 0.64 -0.3 294,375 + MPMX19_03028 0.64 -0.8 294,375 + MPMX19_03028 0.64 -0.3 294,375 + MPMX19_03028 0.64 -0.8 294,376 - MPMX19_03028 0.64 -1.3 294,376 - MPMX19_03028 0.64 -1.0 294,376 - MPMX19_03028 0.64 +0.9 294,376 - MPMX19_03028 0.64 +0.5 294,376 - MPMX19_03028 0.64 +0.5 294,376 - MPMX19_03028 0.64 +0.9 294,376 - MPMX19_03028 0.64 +0.9 294,376 - MPMX19_03028 0.64 -1.3 294,376 - MPMX19_03028 0.64 -0.0 294,376 - MPMX19_03028 0.64 -0.4 294,408 + MPMX19_03028 0.67 -0.4 294,570 + MPMX19_03028 0.82 -0.8 294,570 + MPMX19_03028 0.82 -0.3 294,570 + MPMX19_03028 0.82 -0.5 294,570 + MPMX19_03028 0.82 -0.8 294,570 + MPMX19_03028 0.82 -1.6 294,570 + MPMX19_03028 0.82 +0.6 294,570 + MPMX19_03028 0.82 +1.2 294,570 + MPMX19_03028 0.82 -1.3 294,570 + MPMX19_03028 0.82 +0.2 294,570 + MPMX19_03028 0.82 -0.1 294,570 + MPMX19_03028 0.82 -0.3 294,570 + MPMX19_03028 0.82 -1.7 294,570 + MPMX19_03028 0.82 +0.3 294,570 + MPMX19_03028 0.82 -0.2 294,570 + MPMX19_03028 0.82 -0.3 294,570 + MPMX19_03028 0.82 +0.2 294,571 - MPMX19_03028 0.82 -0.7 294,571 - MPMX19_03028 0.82 +0.5 294,571 - MPMX19_03028 0.82 +0.2 294,571 - MPMX19_03028 0.82 +1.4 294,571 - MPMX19_03028 0.82 +1.0 294,571 - MPMX19_03028 0.82 -1.1 294,571 - MPMX19_03028 0.82 +0.2 294,571 - MPMX19_03028 0.82 +0.4 294,571 - MPMX19_03028 0.82 -0.3 294,697 + +0.3 294,697 + -2.3 294,697 + -0.1 294,697 + -1.1 294,698 - -0.4 294,698 - -0.3 294,698 - +1.3 294,698 - -0.6 294,698 - -0.5 294,698 - +0.0 294,774 + -1.3 294,774 + -0.1 294,774 + +0.3 294,774 + +0.0 294,774 + -0.7 294,775 - +0.8 294,775 - -0.3 294,775 - -1.3 294,775 - -0.8 294,775 - -1.6 294,775 - -0.9 294,775 - -1.3 294,775 - -0.6 294,775 - -1.4 294,775 - -3.1 294,775 - +1.1 294,775 - -0.8 294,775 - -0.9 294,775 - -2.1 294,977 + +1.2 294,977 + -2.3 294,978 - -1.3 295,005 + -0.8 295,005 + +1.0 295,005 + +1.4 295,005 + +0.5 295,027 - -1.4 295,050 + -0.1 295,050 + -0.2 295,050 + -1.1 295,050 + -0.3 295,051 - -0.0 295,174 - MPMX19_03029 0.12 -0.8 295,563 + MPMX19_03029 0.41 -1.7 295,563 + MPMX19_03029 0.41 +1.0 295,564 - MPMX19_03029 0.41 -1.2 295,564 - MPMX19_03029 0.41 -1.3 295,564 - MPMX19_03029 0.41 +0.4 295,581 + MPMX19_03029 0.42 +0.3 295,582 - MPMX19_03029 0.43 +0.0 295,605 + MPMX19_03029 0.44 +0.2 295,605 + MPMX19_03029 0.44 -0.2 295,605 + MPMX19_03029 0.44 +1.3 295,605 + MPMX19_03029 0.44 -0.6 295,606 - MPMX19_03029 0.44 -0.6 295,606 - MPMX19_03029 0.44 -1.2 295,752 + MPMX19_03029 0.55 -0.6 295,752 + MPMX19_03029 0.55 +1.1 295,752 + MPMX19_03029 0.55 +0.3 295,752 + MPMX19_03029 0.55 -0.4 295,753 - MPMX19_03029 0.55 -2.3 295,753 - MPMX19_03029 0.55 +0.0 295,753 - MPMX19_03029 0.55 -0.8
Or see this region's nucleotide sequence