Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03017

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03015 and MPMX19_03016 are separated by 124 nucleotidesMPMX19_03016 and MPMX19_03017 overlap by 11 nucleotidesMPMX19_03017 and MPMX19_03018 are separated by 86 nucleotides MPMX19_03015: MPMX19_03015 - Transcriptional regulatory protein TdiR, at 279,368 to 279,808 _03015 MPMX19_03016: MPMX19_03016 - Response regulator protein TmoT, at 279,933 to 280,631 _03016 MPMX19_03017: MPMX19_03017 - Adaptive-response sensory-kinase SasA, at 280,621 to 282,225 _03017 MPMX19_03018: MPMX19_03018 - UV DNA damage endonuclease, at 282,312 to 283,388 _03018 Position (kb) 280 281 282 283Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 279.829 kb on - strandat 279.829 kb on - strandat 279.870 kb on + strandat 279.870 kb on + strandat 279.870 kb on + strandat 279.871 kb on - strandat 279.871 kb on - strandat 279.871 kb on - strandat 279.871 kb on - strandat 279.893 kb on + strandat 279.893 kb on + strandat 279.894 kb on - strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.895 kb on + strandat 279.909 kb on + strandat 281.297 kb on + strand, within MPMX19_03017at 281.297 kb on + strand, within MPMX19_03017at 281.297 kb on + strand, within MPMX19_03017at 281.297 kb on + strand, within MPMX19_03017at 281.297 kb on + strand, within MPMX19_03017at 281.297 kb on + strand, within MPMX19_03017at 281.298 kb on - strand, within MPMX19_03017at 281.298 kb on - strand, within MPMX19_03017at 281.298 kb on - strand, within MPMX19_03017at 281.597 kb on + strand, within MPMX19_03017at 281.597 kb on + strand, within MPMX19_03017at 281.597 kb on + strand, within MPMX19_03017at 281.618 kb on + strand, within MPMX19_03017at 281.672 kb on + strand, within MPMX19_03017at 281.672 kb on + strand, within MPMX19_03017at 281.673 kb on - strand, within MPMX19_03017at 281.842 kb on - strand, within MPMX19_03017at 281.842 kb on - strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on + strand, within MPMX19_03017at 281.843 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.844 kb on - strand, within MPMX19_03017at 281.970 kb on - strand, within MPMX19_03017at 281.970 kb on - strand, within MPMX19_03017at 281.981 kb on + strand, within MPMX19_03017at 281.982 kb on - strand, within MPMX19_03017at 282.265 kb on + strandat 282.265 kb on + strandat 282.265 kb on + strandat 282.265 kb on + strandat 282.265 kb on + strandat 282.265 kb on + strandat 282.265 kb on + strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.266 kb on - strandat 282.526 kb on + strand, within MPMX19_03018at 282.526 kb on + strand, within MPMX19_03018at 282.526 kb on + strand, within MPMX19_03018at 282.526 kb on + strand, within MPMX19_03018at 282.527 kb on - strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.655 kb on + strand, within MPMX19_03018at 282.656 kb on - strand, within MPMX19_03018at 282.656 kb on - strand, within MPMX19_03018at 282.656 kb on - strand, within MPMX19_03018at 282.710 kb on + strand, within MPMX19_03018at 282.802 kb on + strand, within MPMX19_03018at 282.802 kb on + strand, within MPMX19_03018at 282.802 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.919 kb on + strand, within MPMX19_03018at 282.920 kb on - strand, within MPMX19_03018at 282.920 kb on - strand, within MPMX19_03018at 282.920 kb on - strand, within MPMX19_03018at 282.980 kb on - strand, within MPMX19_03018at 282.980 kb on - strand, within MPMX19_03018at 282.980 kb on - strand, within MPMX19_03018at 283.081 kb on + strand, within MPMX19_03018at 283.082 kb on - strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.108 kb on + strand, within MPMX19_03018at 283.109 kb on - strand, within MPMX19_03018at 283.109 kb on - strand, within MPMX19_03018at 283.151 kb on - strand, within MPMX19_03018at 283.151 kb on - strand, within MPMX19_03018

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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279,829 - -0.3
279,829 - +0.6
279,870 + +0.0
279,870 + +0.6
279,870 + +0.2
279,871 - +0.9
279,871 - -0.9
279,871 - +0.9
279,871 - -1.1
279,893 + +0.3
279,893 + +0.3
279,894 - +0.4
279,895 + +0.2
279,895 + +0.9
279,895 + -1.0
279,895 + +0.2
279,895 + -3.0
279,895 + -0.5
279,895 + +0.3
279,895 + +0.1
279,895 + -1.8
279,909 + -0.4
281,297 + MPMX19_03017 0.42 -1.6
281,297 + MPMX19_03017 0.42 -0.5
281,297 + MPMX19_03017 0.42 -0.8
281,297 + MPMX19_03017 0.42 +1.1
281,297 + MPMX19_03017 0.42 -0.3
281,297 + MPMX19_03017 0.42 +1.1
281,298 - MPMX19_03017 0.42 -3.0
281,298 - MPMX19_03017 0.42 -0.1
281,298 - MPMX19_03017 0.42 -1.4
281,597 + MPMX19_03017 0.61 -0.8
281,597 + MPMX19_03017 0.61 -1.3
281,597 + MPMX19_03017 0.61 -0.9
281,618 + MPMX19_03017 0.62 -0.9
281,672 + MPMX19_03017 0.65 +0.7
281,672 + MPMX19_03017 0.65 +1.6
281,673 - MPMX19_03017 0.66 +2.1
281,842 - MPMX19_03017 0.76 -0.0
281,842 - MPMX19_03017 0.76 -0.1
281,843 + MPMX19_03017 0.76 -1.4
281,843 + MPMX19_03017 0.76 +1.7
281,843 + MPMX19_03017 0.76 -1.4
281,843 + MPMX19_03017 0.76 +1.0
281,843 + MPMX19_03017 0.76 -1.1
281,843 + MPMX19_03017 0.76 +0.5
281,843 + MPMX19_03017 0.76 -0.3
281,843 + MPMX19_03017 0.76 -0.9
281,843 + MPMX19_03017 0.76 -1.1
281,843 + MPMX19_03017 0.76 -0.6
281,843 + MPMX19_03017 0.76 -2.5
281,843 + MPMX19_03017 0.76 -0.6
281,843 + MPMX19_03017 0.76 -0.7
281,843 - MPMX19_03017 0.76 -0.9
281,844 - MPMX19_03017 0.76 -1.3
281,844 - MPMX19_03017 0.76 +0.1
281,844 - MPMX19_03017 0.76 +0.3
281,844 - MPMX19_03017 0.76 +1.5
281,844 - MPMX19_03017 0.76 +0.9
281,844 - MPMX19_03017 0.76 -2.1
281,844 - MPMX19_03017 0.76 -1.3
281,970 - MPMX19_03017 0.84 -0.6
281,970 - MPMX19_03017 0.84 +1.0
281,981 + MPMX19_03017 0.85 -0.1
281,982 - MPMX19_03017 0.85 -0.6
282,265 + -0.4
282,265 + -0.5
282,265 + -0.2
282,265 + -1.7
282,265 + -1.4
282,265 + -0.7
282,265 + -0.8
282,266 - -0.3
282,266 - +0.5
282,266 - +2.2
282,266 - -0.1
282,266 - -0.1
282,266 - -2.1
282,266 - -0.1
282,266 - +0.4
282,526 + MPMX19_03018 0.20 +1.3
282,526 + MPMX19_03018 0.20 -0.0
282,526 + MPMX19_03018 0.20 +0.5
282,526 + MPMX19_03018 0.20 -0.9
282,527 - MPMX19_03018 0.20 +1.1
282,655 + MPMX19_03018 0.32 -0.5
282,655 + MPMX19_03018 0.32 -1.3
282,655 + MPMX19_03018 0.32 +0.6
282,655 + MPMX19_03018 0.32 -1.0
282,656 - MPMX19_03018 0.32 -0.5
282,656 - MPMX19_03018 0.32 -0.1
282,656 - MPMX19_03018 0.32 -1.6
282,710 + MPMX19_03018 0.37 +0.0
282,802 + MPMX19_03018 0.45 -0.3
282,802 + MPMX19_03018 0.45 +0.5
282,802 + MPMX19_03018 0.45 -1.1
282,919 + MPMX19_03018 0.56 -0.7
282,919 + MPMX19_03018 0.56 -2.8
282,919 + MPMX19_03018 0.56 -0.5
282,919 + MPMX19_03018 0.56 -2.7
282,920 - MPMX19_03018 0.56 +0.5
282,920 - MPMX19_03018 0.56 +0.2
282,920 - MPMX19_03018 0.56 -1.3
282,980 - MPMX19_03018 0.62 +0.1
282,980 - MPMX19_03018 0.62 +0.8
282,980 - MPMX19_03018 0.62 -0.9
283,081 + MPMX19_03018 0.71 +0.0
283,082 - MPMX19_03018 0.71 -0.2
283,108 + MPMX19_03018 0.74 -1.4
283,108 + MPMX19_03018 0.74 -0.3
283,108 + MPMX19_03018 0.74 -1.2
283,108 + MPMX19_03018 0.74 -2.3
283,109 - MPMX19_03018 0.74 +0.4
283,109 - MPMX19_03018 0.74 +0.0
283,151 - MPMX19_03018 0.78 +0.5
283,151 - MPMX19_03018 0.78 -0.6

Or see this region's nucleotide sequence