Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03009

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03008 and MPMX19_03009 are separated by 148 nucleotidesMPMX19_03009 and MPMX19_03010 are separated by 421 nucleotides MPMX19_03008: MPMX19_03008 - hypothetical protein, at 271,292 to 272,239 _03008 MPMX19_03009: MPMX19_03009 - Erythritol catabolism regulatory protein EryD, at 272,388 to 273,374 _03009 MPMX19_03010: MPMX19_03010 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 273,796 to 274,458 _03010 Position (kb) 272 273 274Strain fitness (log2 ratio) -2 -1 0 1 2at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.626 kb on + strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.627 kb on - strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.668 kb on + strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.669 kb on - strand, within MPMX19_03008at 271.707 kb on + strand, within MPMX19_03008at 271.708 kb on - strand, within MPMX19_03008at 271.708 kb on - strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.815 kb on + strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.816 kb on - strand, within MPMX19_03008at 271.881 kb on + strand, within MPMX19_03008at 271.882 kb on - strand, within MPMX19_03008at 272.264 kb on + strandat 272.264 kb on + strandat 272.265 kb on - strandat 272.369 kb on + strandat 272.369 kb on + strandat 272.369 kb on + strandat 272.370 kb on - strandat 272.370 kb on - strandat 272.370 kb on - strandat 272.370 kb on - strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.494 kb on + strandat 273.495 kb on - strandat 273.495 kb on - strandat 273.495 kb on - strandat 273.495 kb on - strandat 273.495 kb on - strandat 273.495 kb on - strandat 273.495 kb on - strandat 273.637 kb on + strandat 273.637 kb on + strandat 273.637 kb on + strandat 273.638 kb on - strandat 273.638 kb on - strandat 273.638 kb on - strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.809 kb on - strandat 274.269 kb on + strand, within MPMX19_03010at 274.270 kb on - strand, within MPMX19_03010

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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271,626 + MPMX19_03008 0.35 +0.7
271,626 + MPMX19_03008 0.35 +0.6
271,626 + MPMX19_03008 0.35 -0.4
271,626 + MPMX19_03008 0.35 +0.9
271,626 + MPMX19_03008 0.35 +0.7
271,626 + MPMX19_03008 0.35 -1.1
271,626 + MPMX19_03008 0.35 -1.1
271,627 - MPMX19_03008 0.35 +0.2
271,627 - MPMX19_03008 0.35 +0.3
271,627 - MPMX19_03008 0.35 -0.6
271,627 - MPMX19_03008 0.35 +0.8
271,627 - MPMX19_03008 0.35 -0.1
271,668 + MPMX19_03008 0.40 -0.4
271,668 + MPMX19_03008 0.40 -1.3
271,668 + MPMX19_03008 0.40 +0.3
271,668 + MPMX19_03008 0.40 +0.3
271,668 + MPMX19_03008 0.40 -0.3
271,668 + MPMX19_03008 0.40 +0.2
271,668 + MPMX19_03008 0.40 +0.7
271,668 + MPMX19_03008 0.40 -0.3
271,668 + MPMX19_03008 0.40 -0.5
271,669 - MPMX19_03008 0.40 +0.3
271,669 - MPMX19_03008 0.40 +0.2
271,669 - MPMX19_03008 0.40 -1.1
271,669 - MPMX19_03008 0.40 -0.9
271,669 - MPMX19_03008 0.40 -0.2
271,669 - MPMX19_03008 0.40 -1.5
271,707 + MPMX19_03008 0.44 -1.8
271,708 - MPMX19_03008 0.44 -0.2
271,708 - MPMX19_03008 0.44 -0.3
271,815 + MPMX19_03008 0.55 -0.3
271,815 + MPMX19_03008 0.55 +0.2
271,815 + MPMX19_03008 0.55 +2.7
271,815 + MPMX19_03008 0.55 +0.3
271,816 - MPMX19_03008 0.55 +1.4
271,816 - MPMX19_03008 0.55 -0.1
271,816 - MPMX19_03008 0.55 +0.3
271,816 - MPMX19_03008 0.55 +0.5
271,816 - MPMX19_03008 0.55 -1.3
271,881 + MPMX19_03008 0.62 -1.0
271,882 - MPMX19_03008 0.62 +0.9
272,264 + +0.2
272,264 + -0.6
272,265 - -1.7
272,369 + -0.7
272,369 + -1.1
272,369 + -0.4
272,370 - -0.1
272,370 - -1.0
272,370 - -1.1
272,370 - -0.6
273,494 + +0.5
273,494 + -1.6
273,494 + +0.3
273,494 + -0.4
273,494 + -1.3
273,494 + +0.2
273,494 + -0.0
273,494 + -2.0
273,494 + -1.7
273,494 + -0.3
273,494 + -1.3
273,494 + +1.4
273,495 - -0.5
273,495 - -2.0
273,495 - +0.5
273,495 - -0.1
273,495 - -1.3
273,495 - -0.4
273,495 - -1.0
273,637 + -1.6
273,637 + -0.1
273,637 + -0.2
273,638 - -0.1
273,638 - +1.6
273,638 - +1.2
273,808 + -1.8
273,808 + +0.7
273,808 + -1.7
273,808 + +0.7
273,808 + -0.4
273,808 + +0.7
273,809 - +0.2
274,269 + MPMX19_03010 0.71 +0.2
274,270 - MPMX19_03010 0.71 -0.7

Or see this region's nucleotide sequence