Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03007 and MPMX19_03008 are separated by 88 nucleotides MPMX19_03008 and MPMX19_03009 are separated by 148 nucleotides
MPMX19_03007: MPMX19_03007 - Arabinose import ATP-binding protein AraG, at 269,665 to 271,203
_03007
MPMX19_03008: MPMX19_03008 - hypothetical protein, at 271,292 to 272,239
_03008
MPMX19_03009: MPMX19_03009 - Erythritol catabolism regulatory protein EryD, at 272,388 to 273,374
_03009
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.626 kb on + strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.627 kb on - strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.668 kb on + strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.669 kb on - strand, within MPMX19_03008 at 271.707 kb on + strand, within MPMX19_03008 at 271.708 kb on - strand, within MPMX19_03008 at 271.708 kb on - strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.815 kb on + strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.816 kb on - strand, within MPMX19_03008 at 271.881 kb on + strand, within MPMX19_03008 at 271.882 kb on - strand, within MPMX19_03008 at 272.264 kb on + strand at 272.264 kb on + strand at 272.265 kb on - strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.370 kb on - strand at 272.370 kb on - strand at 272.370 kb on - strand at 272.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 271,626 + MPMX19_03008 0.35 +0.7 271,626 + MPMX19_03008 0.35 +0.6 271,626 + MPMX19_03008 0.35 -0.4 271,626 + MPMX19_03008 0.35 +0.9 271,626 + MPMX19_03008 0.35 +0.7 271,626 + MPMX19_03008 0.35 -1.1 271,626 + MPMX19_03008 0.35 -1.1 271,627 - MPMX19_03008 0.35 +0.2 271,627 - MPMX19_03008 0.35 +0.3 271,627 - MPMX19_03008 0.35 -0.6 271,627 - MPMX19_03008 0.35 +0.8 271,627 - MPMX19_03008 0.35 -0.1 271,668 + MPMX19_03008 0.40 -0.4 271,668 + MPMX19_03008 0.40 -1.3 271,668 + MPMX19_03008 0.40 +0.3 271,668 + MPMX19_03008 0.40 +0.3 271,668 + MPMX19_03008 0.40 -0.3 271,668 + MPMX19_03008 0.40 +0.2 271,668 + MPMX19_03008 0.40 +0.7 271,668 + MPMX19_03008 0.40 -0.3 271,668 + MPMX19_03008 0.40 -0.5 271,669 - MPMX19_03008 0.40 +0.3 271,669 - MPMX19_03008 0.40 +0.2 271,669 - MPMX19_03008 0.40 -1.1 271,669 - MPMX19_03008 0.40 -0.9 271,669 - MPMX19_03008 0.40 -0.2 271,669 - MPMX19_03008 0.40 -1.5 271,707 + MPMX19_03008 0.44 -1.8 271,708 - MPMX19_03008 0.44 -0.2 271,708 - MPMX19_03008 0.44 -0.3 271,815 + MPMX19_03008 0.55 -0.3 271,815 + MPMX19_03008 0.55 +0.2 271,815 + MPMX19_03008 0.55 +2.7 271,815 + MPMX19_03008 0.55 +0.3 271,816 - MPMX19_03008 0.55 +1.4 271,816 - MPMX19_03008 0.55 -0.1 271,816 - MPMX19_03008 0.55 +0.3 271,816 - MPMX19_03008 0.55 +0.5 271,816 - MPMX19_03008 0.55 -1.3 271,881 + MPMX19_03008 0.62 -1.0 271,882 - MPMX19_03008 0.62 +0.9 272,264 + +0.2 272,264 + -0.6 272,265 - -1.7 272,369 + -0.7 272,369 + -1.1 272,369 + -0.4 272,370 - -0.1 272,370 - -1.0 272,370 - -1.1 272,370 - -0.6
Or see this region's nucleotide sequence