Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02987

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02985 and MPMX19_02986 overlap by 4 nucleotidesMPMX19_02986 and MPMX19_02987 are separated by 152 nucleotidesMPMX19_02987 and MPMX19_02988 overlap by 8 nucleotidesMPMX19_02988 and MPMX19_02989 are separated by 221 nucleotides MPMX19_02985: MPMX19_02985 - hypothetical protein, at 247,727 to 248,656 _02985 MPMX19_02986: MPMX19_02986 - Inner membrane ABC transporter permease protein YdcV, at 248,653 to 249,453 _02986 MPMX19_02987: MPMX19_02987 - hypothetical protein, at 249,606 to 249,875 _02987 MPMX19_02988: MPMX19_02988 - hypothetical protein, at 249,868 to 250,362 _02988 MPMX19_02989: MPMX19_02989 - Riboflavin transport system permease protein RibX, at 250,584 to 251,393 _02989 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1at 248.637 kb on - strandat 248.699 kb on + strandat 248.700 kb on - strandat 248.700 kb on - strandat 248.758 kb on + strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.412 kb on + strandat 249.412 kb on + strandat 249.413 kb on - strandat 249.413 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.585 kb on + strandat 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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248,637 - -1.1
248,699 + +0.3
248,700 - +0.4
248,700 - -1.2
248,758 + MPMX19_02986 0.13 -0.8
248,759 - MPMX19_02986 0.13 +1.2
248,759 - MPMX19_02986 0.13 +0.4
248,759 - MPMX19_02986 0.13 -0.5
248,759 - MPMX19_02986 0.13 -0.6
249,319 + MPMX19_02986 0.83 -0.8
249,319 + MPMX19_02986 0.83 -0.5
249,319 + MPMX19_02986 0.83 -1.6
249,319 + MPMX19_02986 0.83 -1.1
249,320 - MPMX19_02986 0.83 +0.3
249,320 - MPMX19_02986 0.83 +1.2
249,320 - MPMX19_02986 0.83 -0.1
249,412 + -0.8
249,412 + -2.5
249,413 - +0.0
249,413 - -1.1
249,581 - +0.2
249,581 - +0.1
249,581 - -1.9
249,585 + -0.4
249,840 + MPMX19_02987 0.87 -0.7
249,840 + MPMX19_02987 0.87 -0.4
249,840 + MPMX19_02987 0.87 -0.4
249,840 + MPMX19_02987 0.87 -0.4
249,841 - MPMX19_02987 0.87 -0.7
249,841 - MPMX19_02987 0.87 -1.1
250,231 + MPMX19_02988 0.73 +0.0
250,231 + MPMX19_02988 0.73 -0.2
250,231 + MPMX19_02988 0.73 +0.2
250,231 + MPMX19_02988 0.73 -0.8
250,231 + MPMX19_02988 0.73 +0.7
250,231 + MPMX19_02988 0.73 +0.1
250,231 + MPMX19_02988 0.73 -0.4
250,232 - MPMX19_02988 0.74 +0.3
250,232 - MPMX19_02988 0.74 -0.4
250,232 - MPMX19_02988 0.74 +1.0
250,232 - MPMX19_02988 0.74 +0.0
250,318 + +0.2
250,318 + -1.1
250,318 + +0.2
250,318 + -0.7
250,319 - -0.3
250,319 - -1.6
250,319 - -0.9
250,319 - -0.4
250,319 - -0.9
250,319 - +0.2
250,320 + +0.6
250,320 + +0.2
250,320 + -0.3
250,320 + -0.3
250,320 + -0.6
250,320 + -1.4
250,320 + -1.7
250,320 + -0.8
250,321 - +0.6
250,321 - -1.0
250,321 - +0.5
250,321 - +0.5
250,321 - +0.0
250,321 - -1.6
250,713 + MPMX19_02989 0.16 -0.6
250,713 + MPMX19_02989 0.16 -0.8
250,713 + MPMX19_02989 0.16 -1.1
250,713 + MPMX19_02989 0.16 -0.1
250,713 + MPMX19_02989 0.16 +0.6
250,713 + MPMX19_02989 0.16 +0.2
250,714 - MPMX19_02989 0.16 +0.0
250,714 - MPMX19_02989 0.16 +0.0

Or see this region's nucleotide sequence