Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02982

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02981 and MPMX19_02982 are separated by 456 nucleotidesMPMX19_02982 and MPMX19_02983 are separated by 285 nucleotides MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810 _02981 MPMX19_02982: MPMX19_02982 - Octopine catabolism/uptake operon regulatory protein OccR, at 244,267 to 245,220 _02982 MPMX19_02983: MPMX19_02983 - hypothetical protein, at 245,506 to 246,555 _02983 Position (kb) 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.420 kb on - strand, within MPMX19_02981at 243.611 kb on + strand, within MPMX19_02981at 243.612 kb on - strand, within MPMX19_02981at 243.783 kb on - strandat 243.783 kb on - strandat 243.783 kb on - strandat 243.783 kb on - strandat 243.880 kb on + strandat 243.881 kb on - strandat 243.881 kb on - strandat 243.885 kb on + strandat 243.885 kb on + strandat 243.885 kb on + strandat 243.886 kb on - strandat 243.933 kb on + strandat 243.947 kb on - strandat 243.947 kb on - strandat 243.947 kb on - strandat 243.948 kb on + strandat 243.981 kb on - strandat 243.981 kb on - strandat 243.981 kb on - strandat 243.981 kb on - strandat 243.992 kb on + strandat 243.992 kb on + strandat 243.992 kb on + strandat 243.993 kb on - strandat 244.104 kb on - strandat 244.390 kb on + strand, within MPMX19_02982at 244.390 kb on + strand, within MPMX19_02982at 244.390 kb on + strand, within MPMX19_02982at 244.390 kb on + strand, within MPMX19_02982at 244.391 kb on - strand, within MPMX19_02982at 244.391 kb on - strand, within MPMX19_02982at 244.391 kb on - strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.463 kb on - strand, within MPMX19_02982at 244.463 kb on - strand, within MPMX19_02982at 244.463 kb on - strand, within MPMX19_02982at 244.594 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.011 kb on + strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.012 kb on - strand, within MPMX19_02982at 245.261 kb on + strandat 245.356 kb on - strandat 245.356 kb on - strandat 245.376 kb on + strandat 245.377 kb on - strandat 245.492 kb on - strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.599 kb on + strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.600 kb on - strandat 245.612 kb on - strand, within MPMX19_02983at 245.612 kb on - strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.689 kb on + strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.690 kb on - strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.785 kb on + strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.786 kb on - strand, within MPMX19_02983at 245.836 kb on + strand, within MPMX19_02983at 245.836 kb on + strand, within MPMX19_02983at 245.837 kb on - strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.848 kb on + strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.849 kb on - strand, within MPMX19_02983at 245.914 kb on + strand, within MPMX19_02983at 245.914 kb on + strand, within MPMX19_02983at 245.915 kb on - strand, within MPMX19_02983at 245.915 kb on - strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.926 kb on + strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 245.927 kb on - strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.025 kb on + strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.026 kb on - strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.136 kb on + strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983at 246.137 kb on - strand, within MPMX19_02983

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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243,347 + MPMX19_02981 0.59 -2.0
243,347 + MPMX19_02981 0.59 -1.8
243,347 + MPMX19_02981 0.59 -0.6
243,347 + MPMX19_02981 0.59 -2.3
243,347 + MPMX19_02981 0.59 -2.6
243,347 + MPMX19_02981 0.59 -1.2
243,347 + MPMX19_02981 0.59 -2.6
243,347 + MPMX19_02981 0.59 -2.1
243,348 - MPMX19_02981 0.59 -1.1
243,348 - MPMX19_02981 0.59 -1.4
243,348 - MPMX19_02981 0.59 -0.6
243,348 - MPMX19_02981 0.59 -0.8
243,348 - MPMX19_02981 0.59 +0.4
243,348 - MPMX19_02981 0.59 -1.4
243,348 - MPMX19_02981 0.59 -1.3
243,420 - MPMX19_02981 0.66 +0.4
243,611 + MPMX19_02981 0.82 -1.0
243,612 - MPMX19_02981 0.82 -1.7
243,783 - -1.1
243,783 - +1.0
243,783 - -0.7
243,783 - -0.0
243,880 + -2.8
243,881 - -0.8
243,881 - -0.3
243,885 + -1.5
243,885 + -2.2
243,885 + -2.1
243,886 - +0.2
243,933 + -0.6
243,947 - +0.2
243,947 - -0.3
243,947 - -0.3
243,948 + -3.5
243,981 - -1.3
243,981 - +2.2
243,981 - +0.9
243,981 - -1.9
243,992 + -2.0
243,992 + -1.4
243,992 + -3.4
243,993 - +1.2
244,104 - +0.2
244,390 + MPMX19_02982 0.13 -1.7
244,390 + MPMX19_02982 0.13 -0.1
244,390 + MPMX19_02982 0.13 -1.7
244,390 + MPMX19_02982 0.13 -0.1
244,391 - MPMX19_02982 0.13 -0.3
244,391 - MPMX19_02982 0.13 -1.1
244,391 - MPMX19_02982 0.13 -1.3
244,462 + MPMX19_02982 0.20 +0.3
244,462 + MPMX19_02982 0.20 +1.3
244,462 + MPMX19_02982 0.20 +0.3
244,462 + MPMX19_02982 0.20 +0.2
244,463 - MPMX19_02982 0.21 +1.2
244,463 - MPMX19_02982 0.21 +0.8
244,463 - MPMX19_02982 0.21 -0.9
244,594 + MPMX19_02982 0.34 -1.7
245,011 + MPMX19_02982 0.78 -1.2
245,011 + MPMX19_02982 0.78 -1.1
245,011 + MPMX19_02982 0.78 -0.9
245,011 + MPMX19_02982 0.78 -0.6
245,011 + MPMX19_02982 0.78 -0.7
245,011 + MPMX19_02982 0.78 +0.7
245,011 + MPMX19_02982 0.78 -1.1
245,011 + MPMX19_02982 0.78 +0.4
245,012 - MPMX19_02982 0.78 -2.3
245,012 - MPMX19_02982 0.78 -1.1
245,012 - MPMX19_02982 0.78 -0.2
245,012 - MPMX19_02982 0.78 -2.3
245,012 - MPMX19_02982 0.78 -1.2
245,012 - MPMX19_02982 0.78 -0.1
245,261 + -0.8
245,356 - -2.6
245,356 - -1.4
245,376 + +0.8
245,377 - -1.2
245,492 - +1.7
245,599 + -1.4
245,599 + +0.0
245,599 + -1.3
245,599 + +1.3
245,599 + +0.6
245,599 + +0.2
245,599 + -1.1
245,599 + -1.8
245,599 + -2.3
245,599 + -0.4
245,599 + -0.3
245,600 - -0.2
245,600 - -0.1
245,600 - +0.7
245,600 - +0.2
245,600 - -1.1
245,600 - +0.2
245,600 - -1.3
245,600 - -0.7
245,600 - -2.0
245,600 - +0.6
245,600 - +1.7
245,600 - -1.3
245,600 - -2.8
245,600 - -1.2
245,600 - +0.6
245,612 - MPMX19_02983 0.10 -0.1
245,612 - MPMX19_02983 0.10 -0.7
245,689 + MPMX19_02983 0.17 +0.4
245,689 + MPMX19_02983 0.17 -1.6
245,689 + MPMX19_02983 0.17 -0.3
245,689 + MPMX19_02983 0.17 +0.2
245,690 - MPMX19_02983 0.18 +0.5
245,690 - MPMX19_02983 0.18 -0.7
245,690 - MPMX19_02983 0.18 +0.9
245,785 + MPMX19_02983 0.27 -0.4
245,785 + MPMX19_02983 0.27 -1.7
245,785 + MPMX19_02983 0.27 +0.7
245,785 + MPMX19_02983 0.27 -2.1
245,785 + MPMX19_02983 0.27 -0.2
245,785 + MPMX19_02983 0.27 -0.1
245,785 + MPMX19_02983 0.27 -0.5
245,785 + MPMX19_02983 0.27 -0.7
245,785 + MPMX19_02983 0.27 -1.7
245,786 - MPMX19_02983 0.27 -1.0
245,786 - MPMX19_02983 0.27 -0.3
245,786 - MPMX19_02983 0.27 -1.3
245,836 + MPMX19_02983 0.31 -2.6
245,836 + MPMX19_02983 0.31 -0.5
245,837 - MPMX19_02983 0.32 -0.2
245,848 + MPMX19_02983 0.33 -0.6
245,848 + MPMX19_02983 0.33 -0.7
245,848 + MPMX19_02983 0.33 -0.3
245,848 + MPMX19_02983 0.33 +1.7
245,848 + MPMX19_02983 0.33 +1.3
245,849 - MPMX19_02983 0.33 -1.3
245,849 - MPMX19_02983 0.33 +0.7
245,849 - MPMX19_02983 0.33 +1.1
245,849 - MPMX19_02983 0.33 +0.2
245,914 + MPMX19_02983 0.39 +1.0
245,914 + MPMX19_02983 0.39 -1.1
245,915 - MPMX19_02983 0.39 -1.0
245,915 - MPMX19_02983 0.39 -0.1
245,926 + MPMX19_02983 0.40 -0.6
245,926 + MPMX19_02983 0.40 -0.6
245,926 + MPMX19_02983 0.40 -0.3
245,926 + MPMX19_02983 0.40 -2.7
245,927 - MPMX19_02983 0.40 +0.4
245,927 - MPMX19_02983 0.40 -1.3
245,927 - MPMX19_02983 0.40 +0.7
246,025 + MPMX19_02983 0.49 -1.1
246,025 + MPMX19_02983 0.49 -0.6
246,025 + MPMX19_02983 0.49 -0.9
246,026 - MPMX19_02983 0.50 -0.8
246,026 - MPMX19_02983 0.50 +0.9
246,026 - MPMX19_02983 0.50 -0.7
246,026 - MPMX19_02983 0.50 +0.9
246,026 - MPMX19_02983 0.50 -0.8
246,026 - MPMX19_02983 0.50 -2.1
246,026 - MPMX19_02983 0.50 +2.2
246,026 - MPMX19_02983 0.50 -0.6
246,026 - MPMX19_02983 0.50 -0.1
246,026 - MPMX19_02983 0.50 -0.4
246,026 - MPMX19_02983 0.50 -0.8
246,136 + MPMX19_02983 0.60 -0.2
246,136 + MPMX19_02983 0.60 -0.1
246,136 + MPMX19_02983 0.60 +0.5
246,137 - MPMX19_02983 0.60 -0.5
246,137 - MPMX19_02983 0.60 -1.5
246,137 - MPMX19_02983 0.60 -0.7
246,137 - MPMX19_02983 0.60 +0.1
246,137 - MPMX19_02983 0.60 +0.5

Or see this region's nucleotide sequence