Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02974

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02973 and MPMX19_02974 are separated by 5 nucleotidesMPMX19_02974 and MPMX19_02975 are separated by 41 nucleotidesMPMX19_02975 and MPMX19_02976 are separated by 32 nucleotides MPMX19_02973: MPMX19_02973 - 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase, at 235,610 to 236,890 _02973 MPMX19_02974: MPMX19_02974 - 3-oxo-isoapionate kinase, at 236,896 to 238,197 _02974 MPMX19_02975: MPMX19_02975 - hypothetical protein, at 238,239 to 238,586 _02975 MPMX19_02976: MPMX19_02976 - Octopine-binding periplasmic protein, at 238,619 to 239,383 _02976 Position (kb) 236 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 235.937 kb on + strand, within MPMX19_02973at 235.937 kb on + strand, within MPMX19_02973at 235.938 kb on - strand, within MPMX19_02973at 235.938 kb on - strand, within MPMX19_02973at 235.995 kb on - strand, within MPMX19_02973at 235.995 kb on - strand, within MPMX19_02973at 236.381 kb on + strand, within MPMX19_02973at 236.382 kb on - strand, within MPMX19_02973at 236.492 kb on + strand, within MPMX19_02973at 236.492 kb on + strand, within MPMX19_02973at 236.493 kb on - strand, within MPMX19_02973at 236.493 kb on - strand, within MPMX19_02973at 236.493 kb on - strand, within MPMX19_02973at 236.775 kb on + strandat 236.775 kb on + strandat 236.776 kb on - strandat 236.776 kb on - strandat 236.776 kb on - strandat 236.776 kb on - strandat 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.154 kb on + strand, within MPMX19_02974at 237.155 kb on - strand, within MPMX19_02974at 237.155 kb on - strand, within MPMX19_02974at 237.284 kb on - strand, within MPMX19_02974at 237.284 kb on - strand, within MPMX19_02974at 237.457 kb on + strand, within MPMX19_02974at 237.458 kb on - strand, within MPMX19_02974at 237.775 kb on + strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 238.063 kb on + strand, within MPMX19_02974at 238.522 kb on + strand, within MPMX19_02975at 238.523 kb on - strand, within MPMX19_02975at 238.644 kb on + strandat 238.644 kb on + strandat 238.644 kb on + strandat 238.644 kb on + strandat 238.644 kb on + strandat 238.645 kb on - strandat 238.911 kb on + strand, within MPMX19_02976at 238.911 kb on + strand, within MPMX19_02976at 238.911 kb on + strand, within MPMX19_02976at 238.911 kb on + strand, within MPMX19_02976at 238.912 kb on - strand, within MPMX19_02976at 238.912 kb on - strand, within MPMX19_02976at 238.912 kb on - strand, within MPMX19_02976at 238.953 kb on + strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 239.050 kb on - strand, within MPMX19_02976at 239.050 kb on - strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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235,937 + MPMX19_02973 0.26 +0.1
235,937 + MPMX19_02973 0.26 -0.8
235,938 - MPMX19_02973 0.26 +1.0
235,938 - MPMX19_02973 0.26 +0.6
235,995 - MPMX19_02973 0.30 -0.1
235,995 - MPMX19_02973 0.30 -0.1
236,381 + MPMX19_02973 0.60 -0.8
236,382 - MPMX19_02973 0.60 -0.6
236,492 + MPMX19_02973 0.69 +0.7
236,492 + MPMX19_02973 0.69 -1.3
236,493 - MPMX19_02973 0.69 -0.7
236,493 - MPMX19_02973 0.69 -0.9
236,493 - MPMX19_02973 0.69 -0.5
236,775 + -1.6
236,775 + +1.2
236,776 - -0.0
236,776 - -0.7
236,776 - +0.1
236,776 - -0.6
237,154 + MPMX19_02974 0.20 -1.1
237,154 + MPMX19_02974 0.20 -0.0
237,154 + MPMX19_02974 0.20 -0.3
237,154 + MPMX19_02974 0.20 -1.9
237,154 + MPMX19_02974 0.20 +0.5
237,155 - MPMX19_02974 0.20 +0.3
237,155 - MPMX19_02974 0.20 -0.8
237,284 - MPMX19_02974 0.30 +0.1
237,284 - MPMX19_02974 0.30 +1.7
237,457 + MPMX19_02974 0.43 +0.5
237,458 - MPMX19_02974 0.43 -0.4
237,775 + MPMX19_02974 0.68 +0.1
237,776 - MPMX19_02974 0.68 -1.9
237,776 - MPMX19_02974 0.68 -0.0
237,776 - MPMX19_02974 0.68 -0.1
237,776 - MPMX19_02974 0.68 +0.1
238,063 + MPMX19_02974 0.90 +1.8
238,522 + MPMX19_02975 0.81 +1.7
238,523 - MPMX19_02975 0.82 -0.9
238,644 + -0.9
238,644 + -0.3
238,644 + -0.3
238,644 + +2.1
238,644 + -0.1
238,645 - -1.4
238,911 + MPMX19_02976 0.38 -0.6
238,911 + MPMX19_02976 0.38 -0.6
238,911 + MPMX19_02976 0.38 +0.7
238,911 + MPMX19_02976 0.38 +1.1
238,912 - MPMX19_02976 0.38 -0.0
238,912 - MPMX19_02976 0.38 -1.3
238,912 - MPMX19_02976 0.38 -0.6
238,953 + MPMX19_02976 0.44 -0.4
238,954 - MPMX19_02976 0.44 +0.7
238,954 - MPMX19_02976 0.44 +0.3
238,954 - MPMX19_02976 0.44 -0.6
238,954 - MPMX19_02976 0.44 -0.1
239,050 - MPMX19_02976 0.56 -0.4
239,050 - MPMX19_02976 0.56 +1.2
239,065 + MPMX19_02976 0.58 -1.1
239,065 + MPMX19_02976 0.58 +0.6
239,065 + MPMX19_02976 0.58 -0.3
239,065 + MPMX19_02976 0.58 +0.1
239,065 + MPMX19_02976 0.58 +0.7
239,066 - MPMX19_02976 0.58 -0.1
239,066 - MPMX19_02976 0.58 -0.9
239,066 - MPMX19_02976 0.58 -1.3
239,066 - MPMX19_02976 0.58 -0.3
239,066 - MPMX19_02976 0.58 -0.3
239,066 - MPMX19_02976 0.58 -0.4
239,066 - MPMX19_02976 0.58 +0.8
239,066 - MPMX19_02976 0.58 -1.6
239,066 - MPMX19_02976 0.58 +0.6
239,067 + MPMX19_02976 0.59 -0.7
239,067 + MPMX19_02976 0.59 +0.4
239,067 + MPMX19_02976 0.59 -1.0
239,067 + MPMX19_02976 0.59 +0.6
239,067 + MPMX19_02976 0.59 -0.3
239,067 + MPMX19_02976 0.59 -0.9
239,067 + MPMX19_02976 0.59 -0.1
239,067 + MPMX19_02976 0.59 +1.7
239,067 + MPMX19_02976 0.59 +0.9
239,067 + MPMX19_02976 0.59 -0.4
239,067 + MPMX19_02976 0.59 -1.1
239,067 + MPMX19_02976 0.59 +0.6
239,067 + MPMX19_02976 0.59 -0.4
239,067 + MPMX19_02976 0.59 -1.5
239,067 + MPMX19_02976 0.59 -0.6
239,067 + MPMX19_02976 0.59 -0.5
239,067 + MPMX19_02976 0.59 -0.3
239,067 + MPMX19_02976 0.59 -1.9
239,067 + MPMX19_02976 0.59 -0.3
239,067 + MPMX19_02976 0.59 -0.7
239,067 + MPMX19_02976 0.59 -2.1
239,067 + MPMX19_02976 0.59 -1.7
239,067 + MPMX19_02976 0.59 -0.7
239,067 + MPMX19_02976 0.59 +0.3
239,067 + MPMX19_02976 0.59 +0.5
239,067 + MPMX19_02976 0.59 -0.4
239,068 - MPMX19_02976 0.59 -0.2
239,068 - MPMX19_02976 0.59 -0.1
239,068 - MPMX19_02976 0.59 -1.7
239,068 - MPMX19_02976 0.59 +1.0
239,068 - MPMX19_02976 0.59 -0.6
239,068 - MPMX19_02976 0.59 -0.6
239,068 - MPMX19_02976 0.59 -2.2
239,068 - MPMX19_02976 0.59 -0.9
239,068 - MPMX19_02976 0.59 -0.7
239,068 - MPMX19_02976 0.59 -0.9
239,068 - MPMX19_02976 0.59 +0.1
239,068 - MPMX19_02976 0.59 -1.6
239,068 - MPMX19_02976 0.59 -0.6
239,068 - MPMX19_02976 0.59 +0.3
239,068 - MPMX19_02976 0.59 -0.2
239,068 - MPMX19_02976 0.59 +0.5
239,068 - MPMX19_02976 0.59 +0.4
239,068 - MPMX19_02976 0.59 +0.1
239,068 - MPMX19_02976 0.59 -0.6
239,068 - MPMX19_02976 0.59 +0.7
239,068 - MPMX19_02976 0.59 -0.1
239,068 - MPMX19_02976 0.59 -0.1
239,068 - MPMX19_02976 0.59 -1.3
239,068 - MPMX19_02976 0.59 -0.9
239,068 - MPMX19_02976 0.59 -0.1
239,136 + MPMX19_02976 0.68 +0.1
239,136 + MPMX19_02976 0.68 +0.6
239,136 + MPMX19_02976 0.68 -0.4
239,136 + MPMX19_02976 0.68 -0.9
239,136 + MPMX19_02976 0.68 -1.9
239,137 - MPMX19_02976 0.68 -0.9
239,137 - MPMX19_02976 0.68 -0.9
239,137 - MPMX19_02976 0.68 +0.1
239,137 - MPMX19_02976 0.68 -1.3

Or see this region's nucleotide sequence