Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02969 and MPMX19_02970 are separated by 142 nucleotides MPMX19_02970 and MPMX19_02971 are separated by 248 nucleotides
MPMX19_02969: MPMX19_02969 - HTH-type transcriptional repressor PurR, at 230,599 to 231,687
_02969
MPMX19_02970: MPMX19_02970 - Sialic acid-binding periplasmic protein SiaP, at 231,830 to 232,870
_02970
MPMX19_02971: MPMX19_02971 - Sialic acid TRAP transporter permease protein SiaT, at 233,119 to 235,014
_02971
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 230.888 kb on + strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.939 kb on + strand, within MPMX19_02969 at 230.940 kb on - strand, within MPMX19_02969 at 230.940 kb on - strand, within MPMX19_02969 at 231.050 kb on + strand, within MPMX19_02969 at 231.050 kb on + strand, within MPMX19_02969 at 231.116 kb on + strand, within MPMX19_02969 at 231.117 kb on - strand, within MPMX19_02969 at 231.117 kb on - strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.159 kb on - strand, within MPMX19_02969 at 231.159 kb on - strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.486 kb on - strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.811 kb on - strand at 231.963 kb on - strand, within MPMX19_02970 at 232.030 kb on + strand, within MPMX19_02970 at 232.211 kb on + strand, within MPMX19_02970 at 232.212 kb on - strand, within MPMX19_02970 at 232.286 kb on + strand, within MPMX19_02970 at 232.286 kb on + strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.535 kb on + strand, within MPMX19_02970 at 232.797 kb on - strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.970 kb on - strand at 232.970 kb on - strand at 232.970 kb on - strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.079 kb on - strand at 233.079 kb on - strand at 233.297 kb on - strand at 233.400 kb on + strand, within MPMX19_02971 at 233.400 kb on + strand, within MPMX19_02971 at 233.401 kb on - strand, within MPMX19_02971 at 233.401 kb on - strand, within MPMX19_02971 at 233.401 kb on - strand, within MPMX19_02971 at 233.503 kb on + strand, within MPMX19_02971 at 233.504 kb on - strand, within MPMX19_02971 at 233.518 kb on + strand, within MPMX19_02971 at 233.518 kb on + strand, within MPMX19_02971 at 233.518 kb on + strand, within MPMX19_02971 at 233.519 kb on - strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.834 kb on - strand, within MPMX19_02971 at 233.834 kb on - strand, within MPMX19_02971
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 230,888 + MPMX19_02969 0.27 -0.0 230,889 - MPMX19_02969 0.27 -0.0 230,889 - MPMX19_02969 0.27 -0.2 230,889 - MPMX19_02969 0.27 -2.0 230,889 - MPMX19_02969 0.27 +2.5 230,889 - MPMX19_02969 0.27 -1.9 230,939 + MPMX19_02969 0.31 -1.1 230,940 - MPMX19_02969 0.31 -0.9 230,940 - MPMX19_02969 0.31 -1.7 231,050 + MPMX19_02969 0.41 -0.6 231,050 + MPMX19_02969 0.41 -0.6 231,116 + MPMX19_02969 0.47 -2.0 231,117 - MPMX19_02969 0.48 -0.1 231,117 - MPMX19_02969 0.48 +0.1 231,158 + MPMX19_02969 0.51 -1.2 231,158 + MPMX19_02969 0.51 -0.7 231,158 + MPMX19_02969 0.51 -1.3 231,158 + MPMX19_02969 0.51 +0.5 231,158 + MPMX19_02969 0.51 +0.2 231,159 - MPMX19_02969 0.51 -0.4 231,159 - MPMX19_02969 0.51 -0.8 231,485 + MPMX19_02969 0.81 -0.1 231,485 + MPMX19_02969 0.81 -0.6 231,485 + MPMX19_02969 0.81 -1.4 231,485 + MPMX19_02969 0.81 -2.3 231,485 + MPMX19_02969 0.81 -0.6 231,485 + MPMX19_02969 0.81 -1.3 231,486 - MPMX19_02969 0.81 -0.3 231,506 + MPMX19_02969 0.83 +0.7 231,506 + MPMX19_02969 0.83 -0.5 231,506 + MPMX19_02969 0.83 +0.4 231,506 + MPMX19_02969 0.83 -1.4 231,506 + MPMX19_02969 0.83 -0.0 231,506 + MPMX19_02969 0.83 -0.6 231,506 + MPMX19_02969 0.83 +0.1 231,507 - MPMX19_02969 0.83 -0.1 231,507 - MPMX19_02969 0.83 -0.3 231,507 - MPMX19_02969 0.83 -0.6 231,507 - MPMX19_02969 0.83 -0.1 231,507 - MPMX19_02969 0.83 -0.7 231,507 - MPMX19_02969 0.83 -0.4 231,811 - -0.9 231,963 - MPMX19_02970 0.13 -0.9 232,030 + MPMX19_02970 0.19 -1.9 232,211 + MPMX19_02970 0.37 +0.6 232,212 - MPMX19_02970 0.37 +0.4 232,286 + MPMX19_02970 0.44 +0.1 232,286 + MPMX19_02970 0.44 -0.3 232,287 - MPMX19_02970 0.44 -0.3 232,287 - MPMX19_02970 0.44 -0.4 232,287 - MPMX19_02970 0.44 +0.2 232,463 + MPMX19_02970 0.61 +1.2 232,463 + MPMX19_02970 0.61 +0.4 232,463 + MPMX19_02970 0.61 -0.4 232,464 - MPMX19_02970 0.61 -3.1 232,464 - MPMX19_02970 0.61 -1.4 232,464 - MPMX19_02970 0.61 +0.3 232,535 + MPMX19_02970 0.68 -0.7 232,797 - -2.2 232,969 + -1.4 232,969 + +0.3 232,969 + -1.7 232,969 + -1.9 232,969 + -0.3 232,970 - +0.0 232,970 - +0.6 232,970 - +0.1 233,078 + -1.7 233,078 + +0.5 233,078 + -0.0 233,078 + -0.6 233,078 + -0.5 233,079 - +0.6 233,079 - -0.1 233,297 - -0.3 233,400 + MPMX19_02971 0.15 -1.2 233,400 + MPMX19_02971 0.15 +0.3 233,401 - MPMX19_02971 0.15 -0.3 233,401 - MPMX19_02971 0.15 -1.5 233,401 - MPMX19_02971 0.15 -0.9 233,503 + MPMX19_02971 0.20 -0.9 233,504 - MPMX19_02971 0.20 -1.9 233,518 + MPMX19_02971 0.21 +1.4 233,518 + MPMX19_02971 0.21 +0.7 233,518 + MPMX19_02971 0.21 +0.2 233,519 - MPMX19_02971 0.21 -0.5 233,833 + MPMX19_02971 0.38 -0.4 233,833 + MPMX19_02971 0.38 +0.9 233,833 + MPMX19_02971 0.38 -0.0 233,833 + MPMX19_02971 0.38 -0.7 233,834 - MPMX19_02971 0.38 -0.7 233,834 - MPMX19_02971 0.38 +0.8
Or see this region's nucleotide sequence