Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02935

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02933 and MPMX19_02934 are separated by 100 nucleotidesMPMX19_02934 and MPMX19_02935 are separated by 7 nucleotidesMPMX19_02935 and MPMX19_02936 are separated by 9 nucleotidesMPMX19_02936 and MPMX19_02937 are separated by 66 nucleotides MPMX19_02933: MPMX19_02933 - Methanol dehydrogenase [cytochrome c] subunit 1, at 187,927 to 189,762 _02933 MPMX19_02934: MPMX19_02934 - hypothetical protein, at 189,863 to 190,465 _02934 MPMX19_02935: MPMX19_02935 - hypothetical protein, at 190,473 to 191,816 _02935 MPMX19_02936: MPMX19_02936 - hypothetical protein, at 191,826 to 192,464 _02936 MPMX19_02937: MPMX19_02937 - hypothetical protein, at 192,531 to 193,034 _02937 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 189.473 kb on - strand, within MPMX19_02933at 189.490 kb on + strand, within MPMX19_02933at 189.490 kb on + strand, within MPMX19_02933at 189.490 kb on + strand, within MPMX19_02933at 189.491 kb on - strand, within MPMX19_02933at 189.491 kb on - strand, within MPMX19_02933at 189.491 kb on - strand, within MPMX19_02933at 189.529 kb on + strand, within MPMX19_02933at 189.529 kb on + strand, within MPMX19_02933at 189.529 kb on + strand, within MPMX19_02933at 189.529 kb on + strand, within MPMX19_02933at 189.529 kb on + strand, within MPMX19_02933at 189.530 kb on - strand, within MPMX19_02933at 189.530 kb on - strand, within MPMX19_02933at 189.530 kb on - strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.574 kb on + strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.575 kb on - strand, within MPMX19_02933at 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.595 kb on + strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.596 kb on - strandat 189.709 kb on + strandat 189.709 kb on + strandat 189.709 kb on + strandat 189.709 kb on + strandat 189.710 kb on - strandat 189.710 kb on - strandat 189.760 kb on + strandat 189.809 kb on + strandat 189.809 kb on + strandat 189.831 kb on + strandat 189.832 kb on - strandat 189.832 kb on - strandat 189.872 kb on + strandat 189.873 kb on - strandat 189.873 kb on - strandat 189.873 kb on - strandat 189.873 kb on - strandat 189.873 kb on - strandat 190.166 kb on + strand, within MPMX19_02934at 190.166 kb on + strand, within MPMX19_02934at 190.166 kb on + strand, within MPMX19_02934at 190.166 kb on + strand, within MPMX19_02934at 190.166 kb on + strand, within MPMX19_02934at 190.167 kb on - strand, within MPMX19_02934at 190.167 kb on - strand, within MPMX19_02934at 190.167 kb on - strand, within MPMX19_02934at 190.184 kb on + strand, within MPMX19_02934at 190.185 kb on - strand, within MPMX19_02934at 190.270 kb on - strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.274 kb on + strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.275 kb on - strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.391 kb on + strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.392 kb on - strand, within MPMX19_02934at 190.420 kb on + strandat 190.421 kb on - strandat 190.421 kb on - strandat 190.421 kb on - strandat 190.421 kb on - strandat 190.815 kb on + strand, within MPMX19_02935at 190.815 kb on + strand, within MPMX19_02935at 190.815 kb on + strand, within MPMX19_02935at 190.816 kb on - strand, within MPMX19_02935at 190.816 kb on - strand, within MPMX19_02935at 190.816 kb on - strand, within MPMX19_02935at 190.816 kb on - strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.830 kb on + strand, within MPMX19_02935at 190.831 kb on - strand, within MPMX19_02935at 190.831 kb on - strand, within MPMX19_02935at 190.831 kb on - strand, within MPMX19_02935at 190.831 kb on - strand, within MPMX19_02935at 190.831 kb on - strand, within MPMX19_02935at 190.842 kb on + strand, within MPMX19_02935at 190.843 kb on - strand, within MPMX19_02935at 190.843 kb on - strand, within MPMX19_02935at 190.843 kb on - strand, within MPMX19_02935at 190.974 kb on + strand, within MPMX19_02935at 190.974 kb on + strand, within MPMX19_02935at 190.975 kb on - strand, within MPMX19_02935at 191.157 kb on + strand, within MPMX19_02935at 191.157 kb on + strand, within MPMX19_02935at 191.157 kb on + strand, within MPMX19_02935at 191.157 kb on + strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.158 kb on - strand, within MPMX19_02935at 191.262 kb on + strand, within MPMX19_02935at 191.262 kb on + strand, within MPMX19_02935at 191.262 kb on + strand, within MPMX19_02935at 191.263 kb on - strand, within MPMX19_02935at 191.263 kb on - strand, within MPMX19_02935at 191.263 kb on - strand, within MPMX19_02935at 191.571 kb on + strand, within MPMX19_02935at 191.571 kb on + strand, within MPMX19_02935at 191.571 kb on + strand, within MPMX19_02935at 191.587 kb on + strand, within MPMX19_02935at 191.588 kb on - strand, within MPMX19_02935at 192.215 kb on + strand, within MPMX19_02936at 192.215 kb on + strand, within MPMX19_02936at 192.216 kb on - strand, within MPMX19_02936at 192.455 kb on - strandat 192.729 kb on + strand, within MPMX19_02937at 192.729 kb on + strand, within MPMX19_02937at 192.729 kb on + strand, within MPMX19_02937at 192.730 kb on - strand, within MPMX19_02937at 192.730 kb on - strand, within MPMX19_02937

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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189,473 - MPMX19_02933 0.84 -0.7
189,490 + MPMX19_02933 0.85 -0.0
189,490 + MPMX19_02933 0.85 -0.7
189,490 + MPMX19_02933 0.85 -0.5
189,491 - MPMX19_02933 0.85 +0.6
189,491 - MPMX19_02933 0.85 -1.5
189,491 - MPMX19_02933 0.85 -0.8
189,529 + MPMX19_02933 0.87 +1.1
189,529 + MPMX19_02933 0.87 -0.4
189,529 + MPMX19_02933 0.87 -2.3
189,529 + MPMX19_02933 0.87 +0.0
189,529 + MPMX19_02933 0.87 -0.1
189,530 - MPMX19_02933 0.87 -0.7
189,530 - MPMX19_02933 0.87 +1.7
189,530 - MPMX19_02933 0.87 -0.7
189,574 + MPMX19_02933 0.90 -0.4
189,574 + MPMX19_02933 0.90 -0.9
189,574 + MPMX19_02933 0.90 -0.6
189,574 + MPMX19_02933 0.90 -1.2
189,574 + MPMX19_02933 0.90 -0.3
189,574 + MPMX19_02933 0.90 -1.0
189,574 + MPMX19_02933 0.90 +1.2
189,574 + MPMX19_02933 0.90 -0.5
189,574 + MPMX19_02933 0.90 -2.0
189,574 + MPMX19_02933 0.90 -0.8
189,574 + MPMX19_02933 0.90 -0.4
189,574 + MPMX19_02933 0.90 -1.3
189,574 + MPMX19_02933 0.90 -0.2
189,574 + MPMX19_02933 0.90 -1.4
189,575 - MPMX19_02933 0.90 -0.7
189,575 - MPMX19_02933 0.90 -0.0
189,575 - MPMX19_02933 0.90 +0.2
189,575 - MPMX19_02933 0.90 -0.6
189,575 - MPMX19_02933 0.90 -1.2
189,575 - MPMX19_02933 0.90 -0.1
189,575 - MPMX19_02933 0.90 -0.6
189,575 - MPMX19_02933 0.90 +0.6
189,575 - MPMX19_02933 0.90 +0.3
189,595 + +0.4
189,595 + -0.9
189,595 + -0.3
189,595 + -0.1
189,595 + -0.1
189,595 + -0.4
189,595 + +0.1
189,595 + -0.6
189,595 + -0.5
189,596 - +0.0
189,596 - -1.7
189,596 - -0.1
189,596 - -0.6
189,596 - +1.3
189,596 - -0.8
189,596 - -0.4
189,596 - +0.2
189,596 - +0.0
189,596 - +0.4
189,596 - +1.6
189,596 - -0.3
189,596 - +0.2
189,709 + -1.0
189,709 + +2.2
189,709 + -1.1
189,709 + -0.1
189,710 - +2.5
189,710 - +0.2
189,760 + -1.0
189,809 + -1.1
189,809 + -0.3
189,831 + -0.7
189,832 - -2.2
189,832 - -0.3
189,872 + -0.3
189,873 - -1.3
189,873 - -1.3
189,873 - -0.4
189,873 - -0.7
189,873 - -2.1
190,166 + MPMX19_02934 0.50 -0.7
190,166 + MPMX19_02934 0.50 -0.3
190,166 + MPMX19_02934 0.50 +0.0
190,166 + MPMX19_02934 0.50 +1.2
190,166 + MPMX19_02934 0.50 -2.0
190,167 - MPMX19_02934 0.50 +0.1
190,167 - MPMX19_02934 0.50 +0.2
190,167 - MPMX19_02934 0.50 +0.0
190,184 + MPMX19_02934 0.53 +0.3
190,185 - MPMX19_02934 0.53 +0.0
190,270 - MPMX19_02934 0.67 -0.3
190,274 + MPMX19_02934 0.68 +0.6
190,274 + MPMX19_02934 0.68 -0.8
190,274 + MPMX19_02934 0.68 -0.7
190,274 + MPMX19_02934 0.68 -1.5
190,274 + MPMX19_02934 0.68 -0.7
190,274 + MPMX19_02934 0.68 -1.1
190,274 + MPMX19_02934 0.68 +0.2
190,274 + MPMX19_02934 0.68 -0.8
190,275 - MPMX19_02934 0.68 -0.3
190,275 - MPMX19_02934 0.68 -0.4
190,275 - MPMX19_02934 0.68 -1.8
190,275 - MPMX19_02934 0.68 -1.1
190,275 - MPMX19_02934 0.68 -0.1
190,275 - MPMX19_02934 0.68 -2.4
190,275 - MPMX19_02934 0.68 +0.9
190,391 + MPMX19_02934 0.88 -0.5
190,391 + MPMX19_02934 0.88 -2.7
190,391 + MPMX19_02934 0.88 +0.2
190,391 + MPMX19_02934 0.88 -0.7
190,391 + MPMX19_02934 0.88 -1.1
190,391 + MPMX19_02934 0.88 -1.0
190,391 + MPMX19_02934 0.88 +0.6
190,391 + MPMX19_02934 0.88 -2.9
190,391 + MPMX19_02934 0.88 +1.7
190,391 + MPMX19_02934 0.88 +1.4
190,392 - MPMX19_02934 0.88 +0.2
190,392 - MPMX19_02934 0.88 -0.3
190,392 - MPMX19_02934 0.88 -1.3
190,392 - MPMX19_02934 0.88 -0.5
190,392 - MPMX19_02934 0.88 +0.7
190,392 - MPMX19_02934 0.88 +0.0
190,392 - MPMX19_02934 0.88 +0.7
190,392 - MPMX19_02934 0.88 +1.0
190,392 - MPMX19_02934 0.88 -0.3
190,392 - MPMX19_02934 0.88 +0.1
190,392 - MPMX19_02934 0.88 -0.1
190,420 + -0.3
190,421 - -0.5
190,421 - -0.6
190,421 - -1.7
190,421 - +0.7
190,815 + MPMX19_02935 0.25 -1.7
190,815 + MPMX19_02935 0.25 -0.4
190,815 + MPMX19_02935 0.25 -1.6
190,816 - MPMX19_02935 0.26 -0.4
190,816 - MPMX19_02935 0.26 -0.8
190,816 - MPMX19_02935 0.26 +0.7
190,816 - MPMX19_02935 0.26 +0.5
190,830 + MPMX19_02935 0.27 -1.1
190,830 + MPMX19_02935 0.27 -0.6
190,830 + MPMX19_02935 0.27 -0.0
190,830 + MPMX19_02935 0.27 -1.8
190,830 + MPMX19_02935 0.27 -1.9
190,830 + MPMX19_02935 0.27 -1.4
190,830 + MPMX19_02935 0.27 -0.9
190,831 - MPMX19_02935 0.27 -1.6
190,831 - MPMX19_02935 0.27 +0.0
190,831 - MPMX19_02935 0.27 -0.4
190,831 - MPMX19_02935 0.27 +0.5
190,831 - MPMX19_02935 0.27 -1.1
190,842 + MPMX19_02935 0.27 -1.2
190,843 - MPMX19_02935 0.28 -1.2
190,843 - MPMX19_02935 0.28 -2.1
190,843 - MPMX19_02935 0.28 +1.3
190,974 + MPMX19_02935 0.37 -0.5
190,974 + MPMX19_02935 0.37 -1.6
190,975 - MPMX19_02935 0.37 -1.6
191,157 + MPMX19_02935 0.51 +0.4
191,157 + MPMX19_02935 0.51 -1.7
191,157 + MPMX19_02935 0.51 +0.1
191,157 + MPMX19_02935 0.51 +0.3
191,158 - MPMX19_02935 0.51 -1.6
191,158 - MPMX19_02935 0.51 -0.1
191,158 - MPMX19_02935 0.51 -0.6
191,158 - MPMX19_02935 0.51 +0.7
191,158 - MPMX19_02935 0.51 -1.3
191,158 - MPMX19_02935 0.51 -1.4
191,158 - MPMX19_02935 0.51 -0.1
191,158 - MPMX19_02935 0.51 -0.6
191,262 + MPMX19_02935 0.59 -0.4
191,262 + MPMX19_02935 0.59 +0.1
191,262 + MPMX19_02935 0.59 +0.3
191,263 - MPMX19_02935 0.59 +2.3
191,263 - MPMX19_02935 0.59 -0.8
191,263 - MPMX19_02935 0.59 -1.8
191,571 + MPMX19_02935 0.82 +1.2
191,571 + MPMX19_02935 0.82 -0.4
191,571 + MPMX19_02935 0.82 -0.2
191,587 + MPMX19_02935 0.83 +0.2
191,588 - MPMX19_02935 0.83 -0.1
192,215 + MPMX19_02936 0.61 +3.3
192,215 + MPMX19_02936 0.61 +0.2
192,216 - MPMX19_02936 0.61 +0.6
192,455 - -1.3
192,729 + MPMX19_02937 0.39 +0.2
192,729 + MPMX19_02937 0.39 +0.9
192,729 + MPMX19_02937 0.39 -0.4
192,730 - MPMX19_02937 0.39 -0.9
192,730 - MPMX19_02937 0.39 +0.5

Or see this region's nucleotide sequence