Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02915 and MPMX19_02916 overlap by 4 nucleotides MPMX19_02916 and MPMX19_02917 overlap by 4 nucleotides MPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides MPMX19_02918 and MPMX19_02919 are separated by 16 nucleotides
MPMX19_02915: MPMX19_02915 - hypothetical protein, at 169,121 to 170,047
_02915
MPMX19_02916: MPMX19_02916 - hypothetical protein, at 170,044 to 170,898
_02916
MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899
_02917
MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804
_02918
MPMX19_02919: MPMX19_02919 - hypothetical protein, at 172,821 to 173,837
_02919
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1 at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.006 kb on + strand at 170.007 kb on - strand at 170.007 kb on - strand at 170.007 kb on - strand at 170.318 kb on + strand, within MPMX19_02916 at 170.319 kb on - strand, within MPMX19_02916 at 170.319 kb on - strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.380 kb on + strand, within MPMX19_02916 at 170.381 kb on - strand, within MPMX19_02916 at 170.381 kb on - strand, within MPMX19_02916 at 170.412 kb on - strand, within MPMX19_02916 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.040 kb on + strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.041 kb on - strand, within MPMX19_02917 at 171.487 kb on + strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.488 kb on - strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.598 kb on + strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 171.599 kb on - strand, within MPMX19_02917 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 170,006 + -1.6 170,006 + -0.2 170,006 + -1.8 170,006 + +0.2 170,006 + +0.6 170,007 - -1.1 170,007 - -0.6 170,007 - +0.6 170,318 + MPMX19_02916 0.32 -0.2 170,319 - MPMX19_02916 0.32 +1.2 170,319 - MPMX19_02916 0.32 -0.2 170,380 + MPMX19_02916 0.39 -1.1 170,380 + MPMX19_02916 0.39 -0.7 170,380 + MPMX19_02916 0.39 -0.7 170,380 + MPMX19_02916 0.39 +0.2 170,381 - MPMX19_02916 0.39 -1.2 170,381 - MPMX19_02916 0.39 +0.4 170,412 - MPMX19_02916 0.43 +0.5 171,040 + MPMX19_02917 0.14 +1.0 171,040 + MPMX19_02917 0.14 -0.8 171,040 + MPMX19_02917 0.14 +0.3 171,040 + MPMX19_02917 0.14 -0.1 171,040 + MPMX19_02917 0.14 +1.6 171,040 + MPMX19_02917 0.14 -0.5 171,040 + MPMX19_02917 0.14 -1.5 171,041 - MPMX19_02917 0.15 +0.2 171,041 - MPMX19_02917 0.15 +0.9 171,041 - MPMX19_02917 0.15 +0.0 171,041 - MPMX19_02917 0.15 +0.1 171,041 - MPMX19_02917 0.15 -0.4 171,041 - MPMX19_02917 0.15 -0.9 171,487 + MPMX19_02917 0.59 -1.8 171,488 - MPMX19_02917 0.59 +0.5 171,488 - MPMX19_02917 0.59 -0.0 171,598 + MPMX19_02917 0.70 +0.8 171,598 + MPMX19_02917 0.70 -0.9 171,598 + MPMX19_02917 0.70 +0.3 171,598 + MPMX19_02917 0.70 -0.3 171,598 + MPMX19_02917 0.70 +0.3 171,599 - MPMX19_02917 0.70 +0.4 171,599 - MPMX19_02917 0.70 -0.8 172,413 + MPMX19_02918 0.57 -0.3 172,413 + MPMX19_02918 0.57 +1.2 172,413 + MPMX19_02918 0.57 -0.4 172,413 + MPMX19_02918 0.57 -1.1 172,413 + MPMX19_02918 0.57 -0.6 172,413 + MPMX19_02918 0.57 -1.9 172,413 + MPMX19_02918 0.57 +0.3 172,413 + MPMX19_02918 0.57 +0.4 172,413 + MPMX19_02918 0.57 +1.0 172,414 - MPMX19_02918 0.57 -0.1 172,414 - MPMX19_02918 0.57 -0.5 172,414 - MPMX19_02918 0.57 -0.2 172,414 - MPMX19_02918 0.57 +0.5 172,701 + MPMX19_02918 0.89 -0.2 172,701 + MPMX19_02918 0.89 -0.1 172,702 - MPMX19_02918 0.89 -0.1 172,702 - MPMX19_02918 0.89 +0.2 172,702 - MPMX19_02918 0.89 -2.2 172,791 + -0.8 172,791 + +0.7 172,791 + +0.8 172,791 + +0.4 172,791 + +0.8 172,791 + -0.8 172,791 + -1.9 172,791 + -1.8 172,791 + -0.2 172,791 + +0.1 172,791 + -0.9 172,791 + -2.5 172,791 + +1.1 172,792 - -0.2 172,792 - -0.1 172,792 - -1.5 172,792 - -0.8 172,792 - +0.6 172,792 - -0.6 172,792 - -1.1 172,792 - +0.6 172,792 - +0.2 172,792 - +0.8 172,792 - -0.4 172,792 - -1.7 172,792 - +0.3
Or see this region's nucleotide sequence