Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02904

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02902 and MPMX19_02903 overlap by 4 nucleotidesMPMX19_02903 and MPMX19_02904 overlap by 4 nucleotidesMPMX19_02904 and MPMX19_02905 overlap by 8 nucleotidesMPMX19_02905 and MPMX19_02906 overlap by 4 nucleotides MPMX19_02902: MPMX19_02902 - hypothetical protein, at 159,832 to 160,383 _02902 MPMX19_02903: MPMX19_02903 - hypothetical protein, at 160,380 to 160,913 _02903 MPMX19_02904: MPMX19_02904 - hypothetical protein, at 160,910 to 161,977 _02904 MPMX19_02905: MPMX19_02905 - hypothetical protein, at 161,970 to 162,452 _02905 MPMX19_02906: MPMX19_02906 - hypothetical protein, at 162,449 to 163,258 _02906 Position (kb) 160 161 162Strain fitness (log2 ratio) -2 -1 0 1 2at 159.955 kb on + strand, within MPMX19_02902at 159.955 kb on + strand, within MPMX19_02902at 159.955 kb on + strand, within MPMX19_02902at 159.955 kb on + strand, within MPMX19_02902at 159.956 kb on - strand, within MPMX19_02902at 160.073 kb on - strand, within MPMX19_02902at 160.093 kb on + strand, within MPMX19_02902at 160.229 kb on - strand, within MPMX19_02902at 160.229 kb on - strand, within MPMX19_02902at 160.623 kb on + strand, within MPMX19_02903at 160.624 kb on - strand, within MPMX19_02903at 160.624 kb on - strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.632 kb on + strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.633 kb on - strand, within MPMX19_02903at 160.654 kb on - strand, within MPMX19_02903at 160.752 kb on + strand, within MPMX19_02903at 160.753 kb on - strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.785 kb on + strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.786 kb on - strand, within MPMX19_02903at 160.792 kb on - strand, within MPMX19_02903at 160.792 kb on - strand, within MPMX19_02903at 160.792 kb on - strand, within MPMX19_02903at 160.836 kb on + strand, within MPMX19_02903at 160.836 kb on + strand, within MPMX19_02903at 160.837 kb on - strand, within MPMX19_02903at 160.927 kb on + strandat 160.951 kb on + strandat 160.952 kb on - strandat 160.952 kb on - strandat 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.195 kb on + strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.196 kb on - strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.264 kb on + strand, within MPMX19_02904at 161.265 kb on - strand, within MPMX19_02904at 161.265 kb on - strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.282 kb on + strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.283 kb on - strand, within MPMX19_02904at 161.444 kb on + strand, within MPMX19_02904at 161.444 kb on + strand, within MPMX19_02904at 161.444 kb on + strand, within MPMX19_02904at 161.445 kb on - strand, within MPMX19_02904at 161.445 kb on - strand, within MPMX19_02904at 161.445 kb on - strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.855 kb on + strand, within MPMX19_02904at 161.855 kb on + strand, within MPMX19_02904at 161.856 kb on - strand, within MPMX19_02904at 161.856 kb on - strand, within MPMX19_02904at 161.975 kb on + strandat 161.975 kb on + strandat 161.975 kb on + strandat 161.976 kb on - strandat 162.297 kb on + strand, within MPMX19_02905at 162.297 kb on + strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.483 kb on + strandat 162.483 kb on + strandat 162.483 kb on + strandat 162.483 kb on + strandat 162.484 kb on - strandat 162.484 kb on - strandat 162.484 kb on - strandat 162.677 kb on + strand, within MPMX19_02906at 162.677 kb on + strand, within MPMX19_02906at 162.677 kb on + strand, within MPMX19_02906at 162.678 kb on - strand, within MPMX19_02906at 162.678 kb on - strand, within MPMX19_02906at 162.764 kb on + strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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159,955 + MPMX19_02902 0.22 -2.6
159,955 + MPMX19_02902 0.22 -1.8
159,955 + MPMX19_02902 0.22 -0.7
159,955 + MPMX19_02902 0.22 -0.4
159,956 - MPMX19_02902 0.22 -0.3
160,073 - MPMX19_02902 0.44 -1.4
160,093 + MPMX19_02902 0.47 +0.5
160,229 - MPMX19_02902 0.72 -0.3
160,229 - MPMX19_02902 0.72 -1.1
160,623 + MPMX19_02903 0.46 -0.8
160,624 - MPMX19_02903 0.46 +1.3
160,624 - MPMX19_02903 0.46 +0.3
160,632 + MPMX19_02903 0.47 -0.1
160,632 + MPMX19_02903 0.47 +1.5
160,632 + MPMX19_02903 0.47 -0.4
160,632 + MPMX19_02903 0.47 -0.6
160,632 + MPMX19_02903 0.47 -0.7
160,632 + MPMX19_02903 0.47 -1.6
160,632 + MPMX19_02903 0.47 -1.0
160,633 - MPMX19_02903 0.47 -1.7
160,633 - MPMX19_02903 0.47 +0.5
160,633 - MPMX19_02903 0.47 -1.2
160,633 - MPMX19_02903 0.47 -1.1
160,633 - MPMX19_02903 0.47 -1.0
160,654 - MPMX19_02903 0.51 -1.0
160,752 + MPMX19_02903 0.70 +1.3
160,753 - MPMX19_02903 0.70 -0.8
160,785 + MPMX19_02903 0.76 +0.1
160,785 + MPMX19_02903 0.76 -1.1
160,785 + MPMX19_02903 0.76 +1.1
160,785 + MPMX19_02903 0.76 -1.4
160,785 + MPMX19_02903 0.76 -0.8
160,785 + MPMX19_02903 0.76 +0.3
160,785 + MPMX19_02903 0.76 -0.1
160,785 + MPMX19_02903 0.76 +0.3
160,785 + MPMX19_02903 0.76 +0.0
160,785 + MPMX19_02903 0.76 -1.0
160,785 + MPMX19_02903 0.76 -0.5
160,785 + MPMX19_02903 0.76 -0.3
160,785 + MPMX19_02903 0.76 +0.7
160,785 + MPMX19_02903 0.76 -0.5
160,785 + MPMX19_02903 0.76 -1.2
160,785 + MPMX19_02903 0.76 -0.3
160,785 + MPMX19_02903 0.76 -0.3
160,785 + MPMX19_02903 0.76 -1.6
160,785 + MPMX19_02903 0.76 -0.1
160,785 + MPMX19_02903 0.76 -0.8
160,785 + MPMX19_02903 0.76 +1.2
160,785 + MPMX19_02903 0.76 -0.9
160,785 + MPMX19_02903 0.76 +1.6
160,785 + MPMX19_02903 0.76 -1.3
160,785 + MPMX19_02903 0.76 -0.5
160,786 - MPMX19_02903 0.76 +2.0
160,786 - MPMX19_02903 0.76 -1.7
160,786 - MPMX19_02903 0.76 -0.2
160,786 - MPMX19_02903 0.76 -0.3
160,786 - MPMX19_02903 0.76 +0.4
160,786 - MPMX19_02903 0.76 -0.8
160,786 - MPMX19_02903 0.76 -0.0
160,786 - MPMX19_02903 0.76 -1.0
160,786 - MPMX19_02903 0.76 -0.4
160,786 - MPMX19_02903 0.76 -0.6
160,786 - MPMX19_02903 0.76 -1.1
160,786 - MPMX19_02903 0.76 -0.3
160,786 - MPMX19_02903 0.76 +0.6
160,792 - MPMX19_02903 0.77 -0.4
160,792 - MPMX19_02903 0.77 -2.3
160,792 - MPMX19_02903 0.77 +1.1
160,836 + MPMX19_02903 0.85 -0.1
160,836 + MPMX19_02903 0.85 -0.3
160,837 - MPMX19_02903 0.86 -0.1
160,927 + -2.6
160,951 + -1.0
160,952 - -1.8
160,952 - -0.2
161,195 + MPMX19_02904 0.27 -1.4
161,195 + MPMX19_02904 0.27 -0.4
161,195 + MPMX19_02904 0.27 -1.4
161,195 + MPMX19_02904 0.27 +0.5
161,196 - MPMX19_02904 0.27 +0.3
161,196 - MPMX19_02904 0.27 +0.3
161,196 - MPMX19_02904 0.27 +0.6
161,196 - MPMX19_02904 0.27 +0.0
161,196 - MPMX19_02904 0.27 -1.2
161,196 - MPMX19_02904 0.27 +0.6
161,196 - MPMX19_02904 0.27 +0.2
161,264 + MPMX19_02904 0.33 -2.4
161,264 + MPMX19_02904 0.33 -0.7
161,264 + MPMX19_02904 0.33 +0.3
161,264 + MPMX19_02904 0.33 +0.3
161,264 + MPMX19_02904 0.33 -0.8
161,265 - MPMX19_02904 0.33 +1.5
161,265 - MPMX19_02904 0.33 -0.3
161,282 + MPMX19_02904 0.35 -0.7
161,282 + MPMX19_02904 0.35 +0.3
161,282 + MPMX19_02904 0.35 -0.3
161,282 + MPMX19_02904 0.35 +0.7
161,282 + MPMX19_02904 0.35 -0.6
161,283 - MPMX19_02904 0.35 +0.0
161,283 - MPMX19_02904 0.35 -0.8
161,283 - MPMX19_02904 0.35 -0.4
161,283 - MPMX19_02904 0.35 -1.1
161,283 - MPMX19_02904 0.35 -0.2
161,444 + MPMX19_02904 0.50 -0.1
161,444 + MPMX19_02904 0.50 +0.7
161,444 + MPMX19_02904 0.50 +1.9
161,445 - MPMX19_02904 0.50 +0.6
161,445 - MPMX19_02904 0.50 -0.3
161,445 - MPMX19_02904 0.50 -0.6
161,585 + MPMX19_02904 0.63 +1.3
161,585 + MPMX19_02904 0.63 -1.7
161,585 + MPMX19_02904 0.63 -1.1
161,585 + MPMX19_02904 0.63 +0.2
161,585 + MPMX19_02904 0.63 +0.2
161,585 + MPMX19_02904 0.63 +0.5
161,585 + MPMX19_02904 0.63 -1.8
161,585 + MPMX19_02904 0.63 +0.3
161,586 - MPMX19_02904 0.63 -0.5
161,586 - MPMX19_02904 0.63 -1.6
161,586 - MPMX19_02904 0.63 -0.1
161,586 - MPMX19_02904 0.63 -1.8
161,586 - MPMX19_02904 0.63 +0.6
161,648 + MPMX19_02904 0.69 -0.6
161,648 + MPMX19_02904 0.69 -0.7
161,648 + MPMX19_02904 0.69 -0.6
161,648 + MPMX19_02904 0.69 +2.3
161,648 + MPMX19_02904 0.69 -0.3
161,648 + MPMX19_02904 0.69 -0.3
161,648 + MPMX19_02904 0.69 -0.6
161,648 + MPMX19_02904 0.69 -0.3
161,648 + MPMX19_02904 0.69 -0.4
161,648 + MPMX19_02904 0.69 +0.6
161,648 + MPMX19_02904 0.69 -1.1
161,648 + MPMX19_02904 0.69 -0.1
161,648 + MPMX19_02904 0.69 -0.7
161,648 + MPMX19_02904 0.69 -0.1
161,649 - MPMX19_02904 0.69 -0.6
161,649 - MPMX19_02904 0.69 -1.3
161,649 - MPMX19_02904 0.69 +1.7
161,649 - MPMX19_02904 0.69 -0.3
161,649 - MPMX19_02904 0.69 +0.3
161,649 - MPMX19_02904 0.69 -0.1
161,649 - MPMX19_02904 0.69 -0.5
161,855 + MPMX19_02904 0.88 -1.2
161,855 + MPMX19_02904 0.88 -1.5
161,856 - MPMX19_02904 0.89 -0.3
161,856 - MPMX19_02904 0.89 -0.1
161,975 + -0.6
161,975 + +0.3
161,975 + -0.8
161,976 - +0.0
162,297 + MPMX19_02905 0.68 -0.7
162,297 + MPMX19_02905 0.68 -0.3
162,298 - MPMX19_02905 0.68 +0.4
162,298 - MPMX19_02905 0.68 +0.6
162,298 - MPMX19_02905 0.68 -0.8
162,483 + -2.3
162,483 + -1.1
162,483 + +1.7
162,483 + -0.8
162,484 - -0.6
162,484 - -0.5
162,484 - +0.2
162,677 + MPMX19_02906 0.28 -0.6
162,677 + MPMX19_02906 0.28 +0.1
162,677 + MPMX19_02906 0.28 -1.7
162,678 - MPMX19_02906 0.28 +0.9
162,678 - MPMX19_02906 0.28 +0.2
162,764 + MPMX19_02906 0.39 +0.0
162,765 - MPMX19_02906 0.39 -1.0
162,765 - MPMX19_02906 0.39 +0.1
162,765 - MPMX19_02906 0.39 -0.4
162,765 - MPMX19_02906 0.39 -1.1
162,969 - MPMX19_02906 0.64 -0.6
162,969 - MPMX19_02906 0.64 -0.1
162,969 - MPMX19_02906 0.64 -0.4

Or see this region's nucleotide sequence