Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02868 and MPMX19_02869 overlap by 1 nucleotides MPMX19_02869 and MPMX19_02870 overlap by 4 nucleotides
MPMX19_02868: MPMX19_02868 - Response regulator protein TmoT, at 113,820 to 114,464
_02868
MPMX19_02869: MPMX19_02869 - Sensor histidine kinase TmoS, at 114,464 to 115,984
_02869
MPMX19_02870: MPMX19_02870 - Serine/threonine-protein kinase PknD, at 115,981 to 121,026
_02870
Position (kb)
114
115
116 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 113.466 kb on + strand at 113.466 kb on + strand at 113.467 kb on - strand at 113.467 kb on - strand at 113.504 kb on + strand at 113.505 kb on - strand at 113.548 kb on + strand at 113.549 kb on - strand at 113.644 kb on + strand at 113.644 kb on + strand at 113.645 kb on - strand at 113.645 kb on - strand at 113.645 kb on - strand at 113.749 kb on + strand at 113.764 kb on - strand at 113.764 kb on - strand at 113.821 kb on + strand at 113.821 kb on + strand at 113.862 kb on + strand at 113.862 kb on + strand at 113.862 kb on + strand at 113.862 kb on + strand at 113.863 kb on - strand at 113.863 kb on - strand at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.344 kb on - strand, within MPMX19_02868 at 114.344 kb on - strand, within MPMX19_02868 at 114.612 kb on + strand at 114.612 kb on + strand at 114.612 kb on + strand at 114.612 kb on + strand at 114.612 kb on + strand at 114.613 kb on - strand at 114.613 kb on - strand at 114.613 kb on - strand at 115.160 kb on - strand, within MPMX19_02869 at 115.578 kb on + strand, within MPMX19_02869 at 115.578 kb on + strand, within MPMX19_02869 at 115.578 kb on + strand, within MPMX19_02869 at 115.578 kb on + strand, within MPMX19_02869 at 115.579 kb on - strand, within MPMX19_02869 at 115.579 kb on - strand, within MPMX19_02869 at 115.579 kb on - strand, within MPMX19_02869 at 115.623 kb on + strand, within MPMX19_02869 at 115.623 kb on + strand, within MPMX19_02869 at 115.623 kb on + strand, within MPMX19_02869 at 115.624 kb on - strand, within MPMX19_02869 at 115.624 kb on - strand, within MPMX19_02869 at 115.624 kb on - strand, within MPMX19_02869 at 115.624 kb on - strand, within MPMX19_02869 at 115.624 kb on - strand, within MPMX19_02869 at 115.624 kb on - strand, within MPMX19_02869 at 115.680 kb on + strand, within MPMX19_02869 at 115.732 kb on - strand, within MPMX19_02869 at 115.732 kb on - strand, within MPMX19_02869 at 115.750 kb on + strand, within MPMX19_02869 at 115.751 kb on - strand, within MPMX19_02869 at 115.931 kb on - strand at 116.020 kb on - strand at 116.020 kb on - strand at 116.051 kb on + strand at 116.051 kb on + strand at 116.105 kb on - strand at 116.119 kb on - strand at 116.119 kb on - strand at 116.357 kb on + strand at 116.357 kb on + strand at 116.358 kb on - strand at 116.358 kb on - strand at 116.358 kb on - strand at 116.432 kb on + strand at 116.433 kb on - strand at 116.687 kb on + strand, within MPMX19_02870 at 116.687 kb on + strand, within MPMX19_02870 at 116.687 kb on + strand, within MPMX19_02870 at 116.687 kb on + strand, within MPMX19_02870 at 116.688 kb on - strand, within MPMX19_02870 at 116.688 kb on - strand, within MPMX19_02870 at 116.688 kb on - strand, within MPMX19_02870 at 116.688 kb on - strand, within MPMX19_02870 at 116.688 kb on - strand, within MPMX19_02870 at 116.786 kb on + strand, within MPMX19_02870 at 116.786 kb on + strand, within MPMX19_02870 at 116.787 kb on - strand, within MPMX19_02870 at 116.927 kb on + strand, within MPMX19_02870 at 116.927 kb on + strand, within MPMX19_02870 at 116.927 kb on + strand, within MPMX19_02870 at 116.927 kb on + strand, within MPMX19_02870 at 116.928 kb on - strand, within MPMX19_02870 at 116.928 kb on - strand, within MPMX19_02870 at 116.928 kb on - strand, within MPMX19_02870
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 113,466 + -0.4 113,466 + -0.5 113,467 - +1.0 113,467 - -0.6 113,504 + -1.4 113,505 - +0.1 113,548 + -2.4 113,549 - -1.4 113,644 + -1.3 113,644 + -1.8 113,645 - +0.2 113,645 - -1.5 113,645 - -0.8 113,749 + -0.1 113,764 - +0.3 113,764 - +0.2 113,821 + +1.1 113,821 + -0.4 113,862 + +1.3 113,862 + -0.2 113,862 + -2.4 113,862 + -2.3 113,863 - +0.2 113,863 - +0.2 114,325 + MPMX19_02868 0.78 +0.7 114,325 + MPMX19_02868 0.78 -1.6 114,325 + MPMX19_02868 0.78 -0.3 114,325 + MPMX19_02868 0.78 +0.0 114,325 + MPMX19_02868 0.78 -1.0 114,325 + MPMX19_02868 0.78 -1.1 114,325 + MPMX19_02868 0.78 -0.5 114,325 + MPMX19_02868 0.78 -2.0 114,325 + MPMX19_02868 0.78 +0.3 114,325 + MPMX19_02868 0.78 -0.1 114,325 + MPMX19_02868 0.78 -0.6 114,325 + MPMX19_02868 0.78 -0.8 114,325 + MPMX19_02868 0.78 -1.5 114,325 + MPMX19_02868 0.78 -1.0 114,325 + MPMX19_02868 0.78 +1.1 114,326 - MPMX19_02868 0.78 +0.4 114,326 - MPMX19_02868 0.78 +0.5 114,326 - MPMX19_02868 0.78 -0.8 114,326 - MPMX19_02868 0.78 -3.0 114,326 - MPMX19_02868 0.78 -1.4 114,326 - MPMX19_02868 0.78 -0.6 114,326 - MPMX19_02868 0.78 -1.3 114,326 - MPMX19_02868 0.78 +0.3 114,326 - MPMX19_02868 0.78 -1.4 114,326 - MPMX19_02868 0.78 -0.3 114,326 - MPMX19_02868 0.78 +0.6 114,326 - MPMX19_02868 0.78 +0.5 114,326 - MPMX19_02868 0.78 -0.5 114,326 - MPMX19_02868 0.78 -1.6 114,326 - MPMX19_02868 0.78 +1.4 114,344 - MPMX19_02868 0.81 -0.0 114,344 - MPMX19_02868 0.81 -0.4 114,612 + -0.3 114,612 + -1.3 114,612 + -0.3 114,612 + -1.4 114,612 + +1.5 114,613 - +0.4 114,613 - -1.3 114,613 - -0.1 115,160 - MPMX19_02869 0.46 +1.0 115,578 + MPMX19_02869 0.73 -0.1 115,578 + MPMX19_02869 0.73 -0.2 115,578 + MPMX19_02869 0.73 -0.6 115,578 + MPMX19_02869 0.73 -0.3 115,579 - MPMX19_02869 0.73 -0.4 115,579 - MPMX19_02869 0.73 -0.9 115,579 - MPMX19_02869 0.73 +0.3 115,623 + MPMX19_02869 0.76 +0.6 115,623 + MPMX19_02869 0.76 -0.2 115,623 + MPMX19_02869 0.76 +1.4 115,624 - MPMX19_02869 0.76 -0.9 115,624 - MPMX19_02869 0.76 +0.3 115,624 - MPMX19_02869 0.76 -0.8 115,624 - MPMX19_02869 0.76 -1.4 115,624 - MPMX19_02869 0.76 -2.7 115,624 - MPMX19_02869 0.76 -0.4 115,680 + MPMX19_02869 0.80 -0.8 115,732 - MPMX19_02869 0.83 -0.5 115,732 - MPMX19_02869 0.83 -1.0 115,750 + MPMX19_02869 0.85 -2.2 115,751 - MPMX19_02869 0.85 -0.7 115,931 - -0.8 116,020 - -0.6 116,020 - -0.8 116,051 + -0.5 116,051 + -0.5 116,105 - +0.0 116,119 - -0.4 116,119 - -0.3 116,357 + -0.6 116,357 + -0.7 116,358 - -1.6 116,358 - -0.6 116,358 - -0.2 116,432 + -0.6 116,433 - -0.1 116,687 + MPMX19_02870 0.14 +0.2 116,687 + MPMX19_02870 0.14 +1.0 116,687 + MPMX19_02870 0.14 -0.5 116,687 + MPMX19_02870 0.14 +1.2 116,688 - MPMX19_02870 0.14 -1.7 116,688 - MPMX19_02870 0.14 -2.0 116,688 - MPMX19_02870 0.14 -0.6 116,688 - MPMX19_02870 0.14 -1.1 116,688 - MPMX19_02870 0.14 -1.6 116,786 + MPMX19_02870 0.16 -0.3 116,786 + MPMX19_02870 0.16 +0.3 116,787 - MPMX19_02870 0.16 -1.6 116,927 + MPMX19_02870 0.19 -0.7 116,927 + MPMX19_02870 0.19 -0.4 116,927 + MPMX19_02870 0.19 +0.9 116,927 + MPMX19_02870 0.19 +0.3 116,928 - MPMX19_02870 0.19 -0.6 116,928 - MPMX19_02870 0.19 +0.2 116,928 - MPMX19_02870 0.19 -1.7
Or see this region's nucleotide sequence