Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02848 and MPMX19_02849 are separated by 49 nucleotides MPMX19_02849 and MPMX19_02850 are separated by 116 nucleotides MPMX19_02850 and MPMX19_02851 are separated by 34 nucleotides MPMX19_02851 and MPMX19_02852 are separated by 81 nucleotides
MPMX19_02848: MPMX19_02848 - Riboflavin transporter, at 91,011 to 91,961
_02848
MPMX19_02849: MPMX19_02849 - Phosphoglycerate kinase, at 92,011 to 92,769
_02849
MPMX19_02850: MPMX19_02850 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 92,886 to 93,908
_02850
MPMX19_02851: MPMX19_02851 - hypothetical protein, at 93,943 to 94,188
_02851
MPMX19_02852: MPMX19_02852 - hypothetical protein, at 94,270 to 95,355
_02852
Position (kb)
92
93
94 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 92.016 kb on + strand at 92.016 kb on + strand at 92.016 kb on + strand at 92.016 kb on + strand at 92.016 kb on + strand at 92.016 kb on + strand at 92.017 kb on - strand at 92.017 kb on - strand at 92.554 kb on + strand, within MPMX19_02849 at 92.788 kb on - strand at 92.788 kb on - strand at 92.893 kb on + strand at 92.894 kb on - strand at 92.894 kb on - strand at 92.950 kb on - strand at 92.950 kb on - strand at 93.031 kb on - strand, within MPMX19_02850 at 93.031 kb on - strand, within MPMX19_02850 at 93.730 kb on - strand, within MPMX19_02850 at 93.730 kb on - strand, within MPMX19_02850 at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.840 kb on + strand at 93.841 kb on - strand at 93.841 kb on - strand at 93.841 kb on - strand at 93.841 kb on - strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.906 kb on + strand at 93.907 kb on - strand at 93.907 kb on - strand at 93.907 kb on - strand at 93.907 kb on - strand at 94.024 kb on + strand, within MPMX19_02851 at 94.024 kb on + strand, within MPMX19_02851 at 94.024 kb on + strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.025 kb on - strand, within MPMX19_02851 at 94.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 92,016 + +0.7 92,016 + +0.0 92,016 + -1.7 92,016 + -0.3 92,016 + -1.3 92,016 + +0.4 92,017 - -2.3 92,017 - +0.2 92,554 + MPMX19_02849 0.72 -0.8 92,788 - -1.4 92,788 - -1.4 92,893 + +0.5 92,894 - -0.1 92,894 - -0.9 92,950 - +0.5 92,950 - -1.6 93,031 - MPMX19_02850 0.14 -0.8 93,031 - MPMX19_02850 0.14 -0.1 93,730 - MPMX19_02850 0.83 -0.8 93,730 - MPMX19_02850 0.83 +1.2 93,840 + -1.7 93,840 + -0.9 93,840 + +0.8 93,840 + +0.3 93,840 + +0.1 93,840 + -0.8 93,840 + -1.1 93,841 - -1.3 93,841 - -0.1 93,841 - -0.7 93,841 - +0.0 93,906 + +0.4 93,906 + +0.9 93,906 + +0.7 93,906 + -1.3 93,906 + -0.9 93,906 + -3.2 93,907 - -0.1 93,907 - -1.3 93,907 - -0.6 93,907 - +0.0 94,024 + MPMX19_02851 0.33 +0.5 94,024 + MPMX19_02851 0.33 -0.3 94,024 + MPMX19_02851 0.33 -1.4 94,025 - MPMX19_02851 0.33 -0.4 94,025 - MPMX19_02851 0.33 -0.1 94,025 - MPMX19_02851 0.33 -0.3 94,025 - MPMX19_02851 0.33 -0.7 94,025 - MPMX19_02851 0.33 -0.6 94,025 - MPMX19_02851 0.33 -0.4 94,271 + +0.6
Or see this region's nucleotide sequence