Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02831

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02830 and MPMX19_02831 are separated by 28 nucleotidesMPMX19_02831 and MPMX19_02832 overlap by 4 nucleotidesMPMX19_02832 and MPMX19_02833 are separated by 8 nucleotides MPMX19_02830: MPMX19_02830 - N-carbamoyl-L-amino-acid hydrolase, at 71,823 to 73,064 _02830 MPMX19_02831: MPMX19_02831 - Acetylpolyamine amidohydrolase, at 73,093 to 74,157 _02831 MPMX19_02832: MPMX19_02832 - putative cystine transporter YijE, at 74,154 to 75,062 _02832 MPMX19_02833: MPMX19_02833 - Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC, at 75,071 to 75,988 _02833 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1at 72.346 kb on - strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.384 kb on + strand, within MPMX19_02830at 72.385 kb on - strand, within MPMX19_02830at 72.385 kb on - strand, within MPMX19_02830at 72.474 kb on + strand, within MPMX19_02830at 72.475 kb on - strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.912 kb on + strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 72.913 kb on - strand, within MPMX19_02830at 73.141 kb on + strandat 73.141 kb on + strandat 73.141 kb on + strandat 73.141 kb on + strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.142 kb on - strandat 73.249 kb on + strand, within MPMX19_02831at 73.289 kb on - strand, within MPMX19_02831at 73.289 kb on - strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.541 kb on - strand, within MPMX19_02831at 73.581 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.780 kb on + strand, within MPMX19_02831at 73.780 kb on + strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.798 kb on + strand, within MPMX19_02831at 73.798 kb on + strand, within MPMX19_02831at 73.799 kb on - strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 74.200 kb on - strandat 74.200 kb on - strandat 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 75.066 kb on + strandat 75.066 kb on + strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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72,346 - MPMX19_02830 0.42 +1.0
72,384 + MPMX19_02830 0.45 -0.3
72,384 + MPMX19_02830 0.45 -0.4
72,384 + MPMX19_02830 0.45 +0.7
72,385 - MPMX19_02830 0.45 -1.3
72,385 - MPMX19_02830 0.45 -0.9
72,474 + MPMX19_02830 0.52 +0.2
72,475 - MPMX19_02830 0.52 -0.6
72,912 + MPMX19_02830 0.88 -2.1
72,912 + MPMX19_02830 0.88 +1.5
72,912 + MPMX19_02830 0.88 +0.5
72,912 + MPMX19_02830 0.88 -1.1
72,912 + MPMX19_02830 0.88 -0.5
72,912 + MPMX19_02830 0.88 -1.3
72,912 + MPMX19_02830 0.88 -0.7
72,912 + MPMX19_02830 0.88 -1.1
72,912 + MPMX19_02830 0.88 +0.9
72,913 - MPMX19_02830 0.88 +0.5
72,913 - MPMX19_02830 0.88 -0.3
72,913 - MPMX19_02830 0.88 -0.3
72,913 - MPMX19_02830 0.88 +0.4
72,913 - MPMX19_02830 0.88 +0.2
72,913 - MPMX19_02830 0.88 -0.3
72,913 - MPMX19_02830 0.88 +0.2
72,913 - MPMX19_02830 0.88 -0.5
72,913 - MPMX19_02830 0.88 -0.3
73,141 + -1.3
73,141 + -0.3
73,141 + -0.1
73,141 + -2.2
73,142 - +0.3
73,142 - -0.5
73,142 - -1.3
73,142 - -0.2
73,142 - -0.3
73,249 + MPMX19_02831 0.15 -2.3
73,289 - MPMX19_02831 0.18 +1.0
73,289 - MPMX19_02831 0.18 -0.9
73,540 + MPMX19_02831 0.42 -0.2
73,540 + MPMX19_02831 0.42 +0.2
73,540 + MPMX19_02831 0.42 +0.5
73,541 - MPMX19_02831 0.42 -0.3
73,581 + MPMX19_02831 0.46 -0.9
73,600 + MPMX19_02831 0.48 +1.3
73,600 + MPMX19_02831 0.48 -1.6
73,600 + MPMX19_02831 0.48 +0.4
73,601 - MPMX19_02831 0.48 -0.6
73,601 - MPMX19_02831 0.48 -0.7
73,601 - MPMX19_02831 0.48 +0.7
73,726 + MPMX19_02831 0.59 +0.8
73,726 + MPMX19_02831 0.59 +0.9
73,726 + MPMX19_02831 0.59 -1.5
73,727 - MPMX19_02831 0.60 -2.2
73,727 - MPMX19_02831 0.60 -1.8
73,727 - MPMX19_02831 0.60 -0.3
73,727 - MPMX19_02831 0.60 -0.6
73,727 - MPMX19_02831 0.60 +0.4
73,727 - MPMX19_02831 0.60 -0.3
73,727 - MPMX19_02831 0.60 -0.4
73,780 + MPMX19_02831 0.65 -1.3
73,780 + MPMX19_02831 0.65 -0.7
73,781 - MPMX19_02831 0.65 -0.3
73,781 - MPMX19_02831 0.65 -0.2
73,781 - MPMX19_02831 0.65 +0.5
73,798 + MPMX19_02831 0.66 -0.5
73,798 + MPMX19_02831 0.66 +0.2
73,799 - MPMX19_02831 0.66 -1.9
73,834 + MPMX19_02831 0.70 -1.6
73,834 + MPMX19_02831 0.70 +0.2
73,834 + MPMX19_02831 0.70 +0.3
74,200 - +0.0
74,200 - -1.1
74,739 + MPMX19_02832 0.64 -0.1
74,739 + MPMX19_02832 0.64 -0.7
74,739 + MPMX19_02832 0.64 -0.7
74,739 + MPMX19_02832 0.64 +0.6
74,739 + MPMX19_02832 0.64 +1.0
74,739 + MPMX19_02832 0.64 -0.8
74,739 + MPMX19_02832 0.64 -1.3
74,739 + MPMX19_02832 0.64 +0.2
74,739 + MPMX19_02832 0.64 +0.2
74,739 + MPMX19_02832 0.64 -0.7
74,739 + MPMX19_02832 0.64 -0.4
74,739 + MPMX19_02832 0.64 -0.8
74,739 + MPMX19_02832 0.64 +0.2
74,739 + MPMX19_02832 0.64 +0.5
74,740 - MPMX19_02832 0.64 +0.4
74,740 - MPMX19_02832 0.64 -1.1
74,740 - MPMX19_02832 0.64 +1.2
74,740 - MPMX19_02832 0.64 +0.7
74,740 - MPMX19_02832 0.64 +0.6
74,740 - MPMX19_02832 0.64 -2.0
74,740 - MPMX19_02832 0.64 +0.4
74,740 - MPMX19_02832 0.64 +1.2
74,740 - MPMX19_02832 0.64 -0.4
74,877 + MPMX19_02832 0.80 +0.4
74,877 + MPMX19_02832 0.80 -0.4
74,877 + MPMX19_02832 0.80 -1.4
74,877 + MPMX19_02832 0.80 +0.3
74,877 + MPMX19_02832 0.80 +0.9
74,877 + MPMX19_02832 0.80 -0.8
74,877 + MPMX19_02832 0.80 -1.4
74,877 + MPMX19_02832 0.80 -0.4
74,878 - MPMX19_02832 0.80 +0.4
74,878 - MPMX19_02832 0.80 +0.5
74,878 - MPMX19_02832 0.80 -0.2
75,066 + +0.7
75,066 + +0.1
75,067 - +0.7
75,067 - +0.2
75,067 - -1.3

Or see this region's nucleotide sequence