Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02479 and MPMX19_02480 are separated by 986 nucleotides MPMX19_02480 and MPMX19_02481 are separated by 22 nucleotides MPMX19_02481 and MPMX19_02482 are separated by 27 nucleotides
MPMX19_02479: MPMX19_02479 - hypothetical protein, at 2,599,131 to 2,599,505
_02479
MPMX19_02480: MPMX19_02480 - Carboxylesterase A, at 2,600,492 to 2,601,985
_02480
MPMX19_02481: MPMX19_02481 - hypothetical protein, at 2,602,008 to 2,602,262
_02481
MPMX19_02482: MPMX19_02482 - Competence protein ComM, at 2,602,290 to 2,603,822
_02482
Position (kb)
2600
2601
2602 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2599.534 kb on - strand at 2599.534 kb on - strand at 2599.572 kb on + strand at 2599.572 kb on + strand at 2599.572 kb on + strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.573 kb on - strand at 2599.598 kb on + strand at 2599.598 kb on + strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.599 kb on - strand at 2599.787 kb on + strand at 2599.787 kb on + strand at 2599.787 kb on + strand at 2599.788 kb on - strand at 2599.851 kb on + strand at 2599.851 kb on + strand at 2599.852 kb on - strand at 2599.852 kb on - strand at 2599.928 kb on + strand at 2599.934 kb on + strand at 2599.969 kb on + strand at 2599.970 kb on - strand at 2599.970 kb on - strand at 2600.101 kb on + strand at 2600.102 kb on - strand at 2600.102 kb on - strand at 2600.193 kb on + strand at 2600.193 kb on + strand at 2600.193 kb on + strand at 2600.193 kb on + strand at 2600.193 kb on + strand at 2600.409 kb on + strand at 2600.409 kb on + strand at 2600.410 kb on - strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.429 kb on + strand at 2600.430 kb on - strand at 2600.430 kb on - strand at 2600.430 kb on - strand at 2600.430 kb on - strand at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.195 kb on - strand, within MPMX19_02480 at 2601.195 kb on - strand, within MPMX19_02480 at 2601.248 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.650 kb on + strand, within MPMX19_02480 at 2601.651 kb on - strand, within MPMX19_02480 at 2601.651 kb on - strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.777 kb on - strand, within MPMX19_02480 at 2601.983 kb on + strand at 2601.983 kb on + strand at 2601.984 kb on - strand at 2601.984 kb on - strand at 2602.307 kb on + strand at 2602.307 kb on + strand at 2602.315 kb on + strand at 2602.316 kb on - strand at 2602.316 kb on - strand at 2602.316 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.540 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.717 kb on + strand, within MPMX19_02482 at 2602.717 kb on + strand, within MPMX19_02482 at 2602.718 kb on - strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,599,534 - -0.4 2,599,534 - +0.6 2,599,572 + +0.3 2,599,572 + +0.3 2,599,572 + -0.6 2,599,573 - +0.9 2,599,573 - -0.1 2,599,573 - -2.1 2,599,573 - -0.1 2,599,573 - -0.1 2,599,573 - +0.5 2,599,573 - -1.0 2,599,573 - +0.9 2,599,573 - -1.1 2,599,573 - -1.8 2,599,573 - +0.3 2,599,573 - +0.2 2,599,573 - +0.8 2,599,573 - +0.3 2,599,573 - -2.3 2,599,573 - -1.6 2,599,573 - +0.9 2,599,573 - -2.0 2,599,573 - -1.3 2,599,573 - -0.6 2,599,573 - -0.8 2,599,573 - -1.4 2,599,573 - -1.7 2,599,598 + -1.4 2,599,598 + +0.6 2,599,599 - +0.6 2,599,599 - -0.1 2,599,599 - -0.5 2,599,599 - -1.1 2,599,599 - +0.8 2,599,599 - +0.4 2,599,599 - -0.3 2,599,599 - -0.3 2,599,599 - -0.6 2,599,599 - -0.4 2,599,599 - -0.5 2,599,599 - -0.4 2,599,599 - -0.3 2,599,787 + -0.4 2,599,787 + -0.2 2,599,787 + -1.1 2,599,788 - -0.1 2,599,851 + -0.4 2,599,851 + -0.9 2,599,852 - +1.1 2,599,852 - -0.9 2,599,928 + +0.9 2,599,934 + +0.6 2,599,969 + -1.6 2,599,970 - -2.6 2,599,970 - -0.6 2,600,101 + -0.4 2,600,102 - +0.2 2,600,102 - -0.6 2,600,193 + +0.5 2,600,193 + -1.9 2,600,193 + -0.1 2,600,193 + -0.8 2,600,193 + -1.8 2,600,409 + +0.6 2,600,409 + +1.5 2,600,410 - -1.0 2,600,429 + +0.3 2,600,429 + -0.9 2,600,429 + -1.2 2,600,429 + -0.1 2,600,429 + +0.3 2,600,429 + -0.1 2,600,429 + +0.9 2,600,429 + -0.1 2,600,429 + -0.7 2,600,430 - -0.7 2,600,430 - +0.3 2,600,430 - -0.6 2,600,430 - +0.6 2,601,119 + MPMX19_02480 0.42 -1.3 2,601,119 + MPMX19_02480 0.42 +0.9 2,601,119 + MPMX19_02480 0.42 -0.5 2,601,119 + MPMX19_02480 0.42 -0.1 2,601,119 + MPMX19_02480 0.42 -1.4 2,601,119 + MPMX19_02480 0.42 -0.4 2,601,120 - MPMX19_02480 0.42 -1.4 2,601,120 - MPMX19_02480 0.42 -0.1 2,601,120 - MPMX19_02480 0.42 -1.1 2,601,120 - MPMX19_02480 0.42 -1.4 2,601,120 - MPMX19_02480 0.42 -1.4 2,601,120 - MPMX19_02480 0.42 -0.4 2,601,120 - MPMX19_02480 0.42 +1.3 2,601,194 + MPMX19_02480 0.47 +0.9 2,601,194 + MPMX19_02480 0.47 -0.7 2,601,194 + MPMX19_02480 0.47 -1.1 2,601,194 + MPMX19_02480 0.47 -0.1 2,601,194 + MPMX19_02480 0.47 -0.2 2,601,195 - MPMX19_02480 0.47 +0.2 2,601,195 - MPMX19_02480 0.47 -0.6 2,601,248 + MPMX19_02480 0.51 -3.1 2,601,503 + MPMX19_02480 0.68 +0.2 2,601,503 + MPMX19_02480 0.68 -1.8 2,601,503 + MPMX19_02480 0.68 -0.1 2,601,503 + MPMX19_02480 0.68 -0.1 2,601,503 + MPMX19_02480 0.68 -0.3 2,601,503 + MPMX19_02480 0.68 +0.1 2,601,503 + MPMX19_02480 0.68 -1.2 2,601,503 + MPMX19_02480 0.68 -1.0 2,601,504 - MPMX19_02480 0.68 -0.8 2,601,504 - MPMX19_02480 0.68 -1.1 2,601,504 - MPMX19_02480 0.68 +0.1 2,601,641 + MPMX19_02480 0.77 -1.8 2,601,641 + MPMX19_02480 0.77 -0.6 2,601,641 + MPMX19_02480 0.77 -1.1 2,601,641 + MPMX19_02480 0.77 -0.8 2,601,642 - MPMX19_02480 0.77 -1.6 2,601,642 - MPMX19_02480 0.77 +0.7 2,601,642 - MPMX19_02480 0.77 +0.7 2,601,650 + MPMX19_02480 0.78 -1.1 2,601,651 - MPMX19_02480 0.78 +0.6 2,601,651 - MPMX19_02480 0.78 -0.3 2,601,776 + MPMX19_02480 0.86 -0.5 2,601,776 + MPMX19_02480 0.86 -0.1 2,601,776 + MPMX19_02480 0.86 +0.7 2,601,776 + MPMX19_02480 0.86 +0.4 2,601,776 + MPMX19_02480 0.86 +0.5 2,601,776 + MPMX19_02480 0.86 -0.4 2,601,776 + MPMX19_02480 0.86 -0.5 2,601,777 - MPMX19_02480 0.86 -0.1 2,601,983 + -1.2 2,601,983 + +1.0 2,601,984 - +0.1 2,601,984 - +1.2 2,602,307 + +1.7 2,602,307 + -0.3 2,602,315 + +0.3 2,602,316 - -1.7 2,602,316 - +0.1 2,602,316 - +0.3 2,602,406 - +0.1 2,602,406 - -1.8 2,602,406 - +0.6 2,602,406 - +0.6 2,602,540 + MPMX19_02482 0.16 -0.1 2,602,558 + MPMX19_02482 0.17 +0.3 2,602,558 + MPMX19_02482 0.17 -0.6 2,602,558 + MPMX19_02482 0.17 -1.1 2,602,717 + MPMX19_02482 0.28 +0.9 2,602,717 + MPMX19_02482 0.28 -0.8 2,602,718 - MPMX19_02482 0.28 -0.6 2,602,822 + MPMX19_02482 0.35 +0.3 2,602,822 + MPMX19_02482 0.35 -0.5 2,602,822 + MPMX19_02482 0.35 +0.4 2,602,823 - MPMX19_02482 0.35 -0.0 2,602,823 - MPMX19_02482 0.35 -0.3 2,602,823 - MPMX19_02482 0.35 -1.1 2,602,823 - MPMX19_02482 0.35 +1.1 2,602,823 - MPMX19_02482 0.35 +0.3 2,602,823 - MPMX19_02482 0.35 -1.6 2,602,823 - MPMX19_02482 0.35 +0.9 2,602,823 - MPMX19_02482 0.35 -0.4 2,602,823 - MPMX19_02482 0.35 -0.4 2,602,823 - MPMX19_02482 0.35 +0.4 2,602,823 - MPMX19_02482 0.35 -0.3
Or see this region's nucleotide sequence