Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01827 and MPMX19_01828 are separated by 72 nucleotides MPMX19_01828 and MPMX19_01829 are separated by 57 nucleotides MPMX19_01829 and MPMX19_01830 are separated by 120 nucleotides
MPMX19_01827: MPMX19_01827 - Ribose-phosphate pyrophosphokinase, at 1,909,705 to 1,910,640
_01827
MPMX19_01828: MPMX19_01828 - hypothetical protein, at 1,910,713 to 1,910,922
_01828
MPMX19_01829: MPMX19_01829 - hypothetical protein, at 1,910,980 to 1,911,678
_01829
MPMX19_01830: MPMX19_01830 - hypothetical protein, at 1,911,799 to 1,912,086
_01830
Position (kb)
1910
1911 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1910.638 kb on + strand at 1910.638 kb on + strand at 1910.639 kb on - strand at 1910.639 kb on - strand at 1910.653 kb on + strand at 1910.653 kb on + strand at 1910.923 kb on - strand at 1910.935 kb on + strand at 1910.935 kb on + strand at 1910.936 kb on - strand at 1910.968 kb on + strand at 1910.968 kb on + strand at 1910.969 kb on - strand at 1911.004 kb on + strand at 1911.004 kb on + strand at 1911.685 kb on + strand at 1911.686 kb on - strand at 1911.709 kb on + strand at 1911.733 kb on + strand at 1911.811 kb on + strand at 1911.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,910,638 + -2.8 1,910,638 + -0.5 1,910,639 - +1.4 1,910,639 - +0.5 1,910,653 + -1.1 1,910,653 + -1.9 1,910,923 - +0.4 1,910,935 + -0.2 1,910,935 + -0.3 1,910,936 - -0.6 1,910,968 + +0.4 1,910,968 + +0.5 1,910,969 - -0.5 1,911,004 + +0.4 1,911,004 + -0.4 1,911,685 + -0.0 1,911,686 - -0.7 1,911,709 + -0.5 1,911,733 + -1.4 1,911,811 + +1.2 1,911,811 + -0.4
Or see this region's nucleotide sequence