Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01664

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01663 and MPMX19_01664 are separated by 286 nucleotidesMPMX19_01664 and MPMX19_01665 are separated by 130 nucleotides MPMX19_01663: MPMX19_01663 - hypothetical protein, at 1,748,620 to 1,749,201 _01663 MPMX19_01664: MPMX19_01664 - Co-chaperone protein DjlA, at 1,749,488 to 1,750,270 _01664 MPMX19_01665: MPMX19_01665 - hypothetical protein, at 1,750,401 to 1,751,555 _01665 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.291 kb on + strandat 1749.291 kb on + strandat 1749.292 kb on - strandat 1749.366 kb on + strandat 1749.366 kb on + strandat 1749.366 kb on + strandat 1749.366 kb on + strandat 1749.367 kb on - strandat 1749.441 kb on + strandat 1749.442 kb on - strandat 1749.442 kb on - strandat 1749.442 kb on - strandat 1749.442 kb on - strandat 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.223 kb on + strandat 1750.223 kb on + strandat 1750.224 kb on - strandat 1750.268 kb on + strandat 1750.268 kb on + strandat 1750.268 kb on + strandat 1750.269 kb on - strandat 1750.269 kb on - strandat 1750.344 kb on - strandat 1750.438 kb on + strandat 1750.438 kb on + strandat 1750.438 kb on + strandat 1750.438 kb on + strandat 1750.438 kb on + strandat 1750.438 kb on + strandat 1750.438 kb on + strandat 1750.439 kb on - strandat 1750.439 kb on - strandat 1750.439 kb on - strandat 1750.439 kb on - strandat 1750.439 kb on - strandat 1750.439 kb on - strandat 1750.439 kb on - strandat 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.010 kb on + strand, within MPMX19_01665at 1751.011 kb on - strand, within MPMX19_01665at 1751.011 kb on - strand, within MPMX19_01665at 1751.011 kb on - strand, within MPMX19_01665at 1751.011 kb on - strand, within MPMX19_01665at 1751.011 kb on - strand, within MPMX19_01665at 1751.011 kb on - strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.022 kb on + strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.023 kb on - strand, within MPMX19_01665at 1751.076 kb on + strand, within MPMX19_01665at 1751.076 kb on + strand, within MPMX19_01665at 1751.076 kb on + strand, within MPMX19_01665at 1751.076 kb on + strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.077 kb on - strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.232 kb on + strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665at 1751.233 kb on - strand, within MPMX19_01665

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,748,853 + MPMX19_01663 0.40 -0.9
1,748,853 + MPMX19_01663 0.40 -0.9
1,748,853 + MPMX19_01663 0.40 -0.1
1,748,853 + MPMX19_01663 0.40 +4.1
1,748,853 + MPMX19_01663 0.40 -0.1
1,748,853 + MPMX19_01663 0.40 -0.4
1,748,853 + MPMX19_01663 0.40 -1.2
1,748,853 + MPMX19_01663 0.40 -0.4
1,748,853 + MPMX19_01663 0.40 -1.7
1,748,853 + MPMX19_01663 0.40 +1.0
1,748,853 + MPMX19_01663 0.40 -1.1
1,748,853 + MPMX19_01663 0.40 +1.5
1,748,853 + MPMX19_01663 0.40 +1.2
1,748,853 + MPMX19_01663 0.40 +1.4
1,748,853 + MPMX19_01663 0.40 -0.3
1,748,853 + MPMX19_01663 0.40 -0.1
1,748,853 + MPMX19_01663 0.40 +0.7
1,748,853 + MPMX19_01663 0.40 +0.4
1,748,854 - MPMX19_01663 0.40 -0.6
1,748,854 - MPMX19_01663 0.40 -0.3
1,748,854 - MPMX19_01663 0.40 -0.3
1,748,854 - MPMX19_01663 0.40 -0.3
1,748,854 - MPMX19_01663 0.40 +0.7
1,748,854 - MPMX19_01663 0.40 -2.4
1,748,949 + MPMX19_01663 0.57 +0.7
1,748,949 + MPMX19_01663 0.57 -0.4
1,748,949 + MPMX19_01663 0.57 -0.9
1,748,949 + MPMX19_01663 0.57 +1.3
1,748,949 + MPMX19_01663 0.57 -0.6
1,748,949 + MPMX19_01663 0.57 +0.6
1,748,949 + MPMX19_01663 0.57 -0.5
1,748,949 + MPMX19_01663 0.57 -0.5
1,748,949 + MPMX19_01663 0.57 -1.1
1,748,949 + MPMX19_01663 0.57 +0.4
1,748,949 + MPMX19_01663 0.57 -0.9
1,748,949 + MPMX19_01663 0.57 -1.2
1,748,950 - MPMX19_01663 0.57 -2.1
1,748,950 - MPMX19_01663 0.57 -1.0
1,748,950 - MPMX19_01663 0.57 +0.7
1,748,950 - MPMX19_01663 0.57 +1.0
1,748,950 - MPMX19_01663 0.57 +1.1
1,749,119 + MPMX19_01663 0.86 +1.7
1,749,119 + MPMX19_01663 0.86 +0.3
1,749,119 + MPMX19_01663 0.86 -0.4
1,749,119 + MPMX19_01663 0.86 +0.1
1,749,119 + MPMX19_01663 0.86 -1.6
1,749,291 + -1.1
1,749,291 + -1.2
1,749,292 - -2.5
1,749,366 + +0.1
1,749,366 + -0.9
1,749,366 + +0.1
1,749,366 + -1.4
1,749,367 - -2.2
1,749,441 + -2.4
1,749,442 - -1.0
1,749,442 - +0.5
1,749,442 - +0.5
1,749,442 - -0.3
1,749,723 + MPMX19_01664 0.30 -1.4
1,749,723 + MPMX19_01664 0.30 -1.1
1,749,723 + MPMX19_01664 0.30 -1.1
1,749,723 + MPMX19_01664 0.30 -1.0
1,749,723 + MPMX19_01664 0.30 -0.5
1,749,723 + MPMX19_01664 0.30 -1.9
1,749,723 + MPMX19_01664 0.30 -0.6
1,749,723 + MPMX19_01664 0.30 +0.0
1,749,723 + MPMX19_01664 0.30 +0.3
1,749,723 + MPMX19_01664 0.30 -1.7
1,749,723 + MPMX19_01664 0.30 -1.6
1,749,723 + MPMX19_01664 0.30 -0.8
1,749,723 + MPMX19_01664 0.30 -1.3
1,749,723 + MPMX19_01664 0.30 -1.3
1,749,723 + MPMX19_01664 0.30 +0.3
1,749,723 + MPMX19_01664 0.30 -0.9
1,749,724 - MPMX19_01664 0.30 +0.5
1,749,724 - MPMX19_01664 0.30 -0.9
1,749,724 - MPMX19_01664 0.30 +0.1
1,749,724 - MPMX19_01664 0.30 -0.7
1,749,724 - MPMX19_01664 0.30 -0.7
1,749,724 - MPMX19_01664 0.30 +1.0
1,749,724 - MPMX19_01664 0.30 -0.4
1,749,724 - MPMX19_01664 0.30 +0.1
1,749,724 - MPMX19_01664 0.30 +1.0
1,749,842 + MPMX19_01664 0.45 +0.8
1,749,842 + MPMX19_01664 0.45 -0.9
1,749,842 + MPMX19_01664 0.45 +0.6
1,749,842 + MPMX19_01664 0.45 -0.9
1,749,842 + MPMX19_01664 0.45 +1.7
1,749,843 - MPMX19_01664 0.45 +0.0
1,749,843 - MPMX19_01664 0.45 -0.4
1,749,843 - MPMX19_01664 0.45 -1.5
1,749,843 - MPMX19_01664 0.45 -1.7
1,749,959 + MPMX19_01664 0.60 -0.1
1,749,959 + MPMX19_01664 0.60 -1.1
1,749,959 + MPMX19_01664 0.60 +0.1
1,749,959 + MPMX19_01664 0.60 +0.6
1,749,960 - MPMX19_01664 0.60 +0.1
1,749,960 - MPMX19_01664 0.60 -1.6
1,749,960 - MPMX19_01664 0.60 +0.8
1,749,960 - MPMX19_01664 0.60 -0.8
1,749,960 - MPMX19_01664 0.60 -1.0
1,749,960 - MPMX19_01664 0.60 +0.5
1,749,960 - MPMX19_01664 0.60 +0.5
1,749,960 - MPMX19_01664 0.60 +0.7
1,750,061 + MPMX19_01664 0.73 +0.2
1,750,061 + MPMX19_01664 0.73 +0.6
1,750,061 + MPMX19_01664 0.73 +0.3
1,750,061 + MPMX19_01664 0.73 +1.0
1,750,061 + MPMX19_01664 0.73 +1.1
1,750,061 + MPMX19_01664 0.73 +0.3
1,750,062 - MPMX19_01664 0.73 +0.2
1,750,062 - MPMX19_01664 0.73 +0.1
1,750,062 - MPMX19_01664 0.73 +0.3
1,750,062 - MPMX19_01664 0.73 +0.7
1,750,223 + -0.3
1,750,223 + +1.3
1,750,224 - -2.3
1,750,268 + -0.1
1,750,268 + -0.1
1,750,268 + +1.0
1,750,269 - -0.8
1,750,269 - -0.1
1,750,344 - -2.2
1,750,438 + +0.5
1,750,438 + +0.5
1,750,438 + +1.5
1,750,438 + -0.3
1,750,438 + -0.2
1,750,438 + +0.5
1,750,438 + -1.0
1,750,439 - -1.4
1,750,439 - +0.5
1,750,439 - -1.9
1,750,439 - +0.1
1,750,439 - -1.3
1,750,439 - -0.9
1,750,439 - -0.5
1,751,010 + MPMX19_01665 0.53 -0.1
1,751,010 + MPMX19_01665 0.53 -0.3
1,751,010 + MPMX19_01665 0.53 -0.6
1,751,010 + MPMX19_01665 0.53 -0.2
1,751,010 + MPMX19_01665 0.53 -1.0
1,751,010 + MPMX19_01665 0.53 +0.1
1,751,010 + MPMX19_01665 0.53 +0.1
1,751,010 + MPMX19_01665 0.53 -0.9
1,751,010 + MPMX19_01665 0.53 -0.1
1,751,010 + MPMX19_01665 0.53 -0.5
1,751,011 - MPMX19_01665 0.53 -1.4
1,751,011 - MPMX19_01665 0.53 -0.5
1,751,011 - MPMX19_01665 0.53 -1.3
1,751,011 - MPMX19_01665 0.53 -2.0
1,751,011 - MPMX19_01665 0.53 -0.3
1,751,011 - MPMX19_01665 0.53 -1.9
1,751,022 + MPMX19_01665 0.54 +1.3
1,751,022 + MPMX19_01665 0.54 -0.0
1,751,022 + MPMX19_01665 0.54 -0.4
1,751,022 + MPMX19_01665 0.54 -0.9
1,751,022 + MPMX19_01665 0.54 -1.5
1,751,022 + MPMX19_01665 0.54 -1.4
1,751,022 + MPMX19_01665 0.54 +0.5
1,751,022 + MPMX19_01665 0.54 -0.9
1,751,022 + MPMX19_01665 0.54 +0.1
1,751,022 + MPMX19_01665 0.54 +2.7
1,751,022 + MPMX19_01665 0.54 +1.5
1,751,022 + MPMX19_01665 0.54 -0.8
1,751,023 - MPMX19_01665 0.54 -1.9
1,751,023 - MPMX19_01665 0.54 -0.6
1,751,023 - MPMX19_01665 0.54 +1.1
1,751,023 - MPMX19_01665 0.54 +0.3
1,751,023 - MPMX19_01665 0.54 -0.0
1,751,023 - MPMX19_01665 0.54 -0.4
1,751,023 - MPMX19_01665 0.54 -0.4
1,751,023 - MPMX19_01665 0.54 +0.1
1,751,023 - MPMX19_01665 0.54 -2.2
1,751,023 - MPMX19_01665 0.54 -0.1
1,751,076 + MPMX19_01665 0.58 +1.3
1,751,076 + MPMX19_01665 0.58 -2.1
1,751,076 + MPMX19_01665 0.58 +1.5
1,751,076 + MPMX19_01665 0.58 +0.8
1,751,077 - MPMX19_01665 0.59 -1.3
1,751,077 - MPMX19_01665 0.59 -0.7
1,751,077 - MPMX19_01665 0.59 -0.0
1,751,077 - MPMX19_01665 0.59 -2.2
1,751,077 - MPMX19_01665 0.59 -0.3
1,751,077 - MPMX19_01665 0.59 +0.4
1,751,077 - MPMX19_01665 0.59 -1.5
1,751,077 - MPMX19_01665 0.59 -0.4
1,751,077 - MPMX19_01665 0.59 +0.1
1,751,232 + MPMX19_01665 0.72 -1.1
1,751,232 + MPMX19_01665 0.72 +1.7
1,751,232 + MPMX19_01665 0.72 -0.1
1,751,232 + MPMX19_01665 0.72 +0.1
1,751,232 + MPMX19_01665 0.72 +0.4
1,751,232 + MPMX19_01665 0.72 -0.7
1,751,232 + MPMX19_01665 0.72 -0.5
1,751,232 + MPMX19_01665 0.72 -0.1
1,751,232 + MPMX19_01665 0.72 -0.8
1,751,232 + MPMX19_01665 0.72 -0.9
1,751,233 - MPMX19_01665 0.72 -0.0
1,751,233 - MPMX19_01665 0.72 +0.2
1,751,233 - MPMX19_01665 0.72 +0.4
1,751,233 - MPMX19_01665 0.72 -0.1
1,751,233 - MPMX19_01665 0.72 -1.7
1,751,233 - MPMX19_01665 0.72 -0.3
1,751,233 - MPMX19_01665 0.72 -0.6
1,751,233 - MPMX19_01665 0.72 +0.0
1,751,233 - MPMX19_01665 0.72 -0.0
1,751,233 - MPMX19_01665 0.72 +1.1

Or see this region's nucleotide sequence