Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01620 and MPMX19_01621 are separated by 124 nucleotides MPMX19_01621 and MPMX19_01622 are separated by 146 nucleotides MPMX19_01622 and MPMX19_01623 are separated by 98 nucleotides
MPMX19_01620: MPMX19_01620 - hypothetical protein, at 1,699,690 to 1,699,926
_01620
MPMX19_01621: MPMX19_01621 - hypothetical protein, at 1,700,051 to 1,700,662
_01621
MPMX19_01622: MPMX19_01622 - hypothetical protein, at 1,700,809 to 1,701,246
_01622
MPMX19_01623: MPMX19_01623 - Trehalose synthase/amylase TreS, at 1,701,345 to 1,703,030
_01623
Position (kb) 1700
1701
1702 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1700.027 kb on - strand at 1700.037 kb on + strand at 1700.038 kb on - strand at 1700.055 kb on + strand at 1700.055 kb on + strand at 1700.130 kb on + strand, within MPMX19_01621 at 1700.130 kb on + strand, within MPMX19_01621 at 1700.130 kb on + strand, within MPMX19_01621 at 1700.131 kb on - strand, within MPMX19_01621 at 1700.307 kb on + strand, within MPMX19_01621 at 1700.307 kb on + strand, within MPMX19_01621 at 1700.307 kb on + strand, within MPMX19_01621 at 1700.307 kb on + strand, within MPMX19_01621 at 1700.307 kb on + strand, within MPMX19_01621 at 1700.307 kb on + strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.308 kb on - strand, within MPMX19_01621 at 1700.388 kb on + strand, within MPMX19_01621 at 1700.388 kb on + strand, within MPMX19_01621 at 1700.388 kb on + strand, within MPMX19_01621 at 1700.388 kb on + strand, within MPMX19_01621 at 1700.389 kb on - strand, within MPMX19_01621 at 1700.389 kb on - strand, within MPMX19_01621 at 1700.389 kb on - strand, within MPMX19_01621 at 1700.762 kb on - strand at 1700.762 kb on - strand at 1700.875 kb on + strand, within MPMX19_01622 at 1700.875 kb on + strand, within MPMX19_01622 at 1700.875 kb on + strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1700.876 kb on - strand, within MPMX19_01622 at 1701.097 kb on + strand, within MPMX19_01622 at 1701.097 kb on + strand, within MPMX19_01622 at 1701.098 kb on - strand, within MPMX19_01622 at 1701.098 kb on - strand, within MPMX19_01622 at 1701.098 kb on - strand, within MPMX19_01622 at 1701.098 kb on - strand, within MPMX19_01622 at 1701.199 kb on + strand, within MPMX19_01622 at 1701.199 kb on + strand, within MPMX19_01622 at 1701.199 kb on + strand, within MPMX19_01622 at 1701.199 kb on + strand, within MPMX19_01622 at 1701.199 kb on + strand, within MPMX19_01622 at 1701.200 kb on - strand, within MPMX19_01622 at 1701.200 kb on - strand, within MPMX19_01622 at 1701.245 kb on - strand at 1701.245 kb on - strand at 1701.245 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.307 kb on - strand at 1701.328 kb on + strand at 1701.328 kb on + strand at 1701.328 kb on + strand at 1701.328 kb on + strand at 1701.328 kb on + strand at 1701.328 kb on + strand at 1701.328 kb on + strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.329 kb on - strand at 1701.346 kb on + strand at 1701.346 kb on + strand at 1701.346 kb on + strand at 1701.346 kb on + strand at 1701.347 kb on - strand at 1701.347 kb on - strand at 1701.347 kb on - strand at 1701.347 kb on - strand at 1701.347 kb on - strand at 1701.347 kb on - strand at 1701.347 kb on - strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.394 kb on + strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.395 kb on - strand at 1701.424 kb on + strand at 1701.430 kb on + strand at 1701.430 kb on + strand at 1701.430 kb on + strand at 1701.430 kb on + strand at 1701.430 kb on + strand at 1701.430 kb on + strand at 1701.431 kb on + strand at 1701.431 kb on - strand at 1701.431 kb on - strand at 1701.431 kb on - strand at 1701.601 kb on + strand, within MPMX19_01623 at 1701.601 kb on + strand, within MPMX19_01623 at 1701.601 kb on + strand, within MPMX19_01623 at 1701.602 kb on - strand, within MPMX19_01623 at 1701.757 kb on + strand, within MPMX19_01623 at 1701.757 kb on + strand, within MPMX19_01623 at 1701.757 kb on + strand, within MPMX19_01623 at 1701.757 kb on + strand, within MPMX19_01623 at 1701.758 kb on - strand, within MPMX19_01623 at 1701.758 kb on - strand, within MPMX19_01623 at 1701.758 kb on - strand, within MPMX19_01623 at 1701.907 kb on + strand, within MPMX19_01623 at 1701.907 kb on + strand, within MPMX19_01623 at 1701.908 kb on - strand, within MPMX19_01623 at 1701.947 kb on + strand, within MPMX19_01623 at 1701.947 kb on + strand, within MPMX19_01623 at 1701.947 kb on + strand, within MPMX19_01623 at 1701.947 kb on + strand, within MPMX19_01623 at 1701.947 kb on + strand, within MPMX19_01623 at 1701.948 kb on - strand, within MPMX19_01623 at 1701.948 kb on - strand, within MPMX19_01623 at 1701.948 kb on - strand, within MPMX19_01623 at 1701.948 kb on - strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.949 kb on + strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1701.950 kb on - strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.018 kb on + strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.019 kb on - strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.204 kb on + strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623 at 1702.205 kb on - strand, within MPMX19_01623
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,700,027 - -0.7 1,700,037 + +0.4 1,700,038 - +0.9 1,700,055 + -1.4 1,700,055 + -2.0 1,700,130 + MPMX19_01621 0.13 -1.3 1,700,130 + MPMX19_01621 0.13 -0.8 1,700,130 + MPMX19_01621 0.13 +1.1 1,700,131 - MPMX19_01621 0.13 -1.1 1,700,307 + MPMX19_01621 0.42 -0.8 1,700,307 + MPMX19_01621 0.42 +0.3 1,700,307 + MPMX19_01621 0.42 +0.4 1,700,307 + MPMX19_01621 0.42 -0.9 1,700,307 + MPMX19_01621 0.42 -1.9 1,700,307 + MPMX19_01621 0.42 -0.1 1,700,308 - MPMX19_01621 0.42 +0.4 1,700,308 - MPMX19_01621 0.42 -0.4 1,700,308 - MPMX19_01621 0.42 +0.9 1,700,308 - MPMX19_01621 0.42 -1.0 1,700,308 - MPMX19_01621 0.42 -0.7 1,700,308 - MPMX19_01621 0.42 -1.7 1,700,308 - MPMX19_01621 0.42 +1.2 1,700,308 - MPMX19_01621 0.42 +0.7 1,700,308 - MPMX19_01621 0.42 -1.3 1,700,308 - MPMX19_01621 0.42 -0.1 1,700,308 - MPMX19_01621 0.42 -0.3 1,700,388 + MPMX19_01621 0.55 +0.7 1,700,388 + MPMX19_01621 0.55 -0.1 1,700,388 + MPMX19_01621 0.55 -1.4 1,700,388 + MPMX19_01621 0.55 -0.9 1,700,389 - MPMX19_01621 0.55 +0.4 1,700,389 - MPMX19_01621 0.55 +0.3 1,700,389 - MPMX19_01621 0.55 -1.3 1,700,762 - -0.6 1,700,762 - +1.1 1,700,875 + MPMX19_01622 0.15 -0.8 1,700,875 + MPMX19_01622 0.15 -0.2 1,700,875 + MPMX19_01622 0.15 -0.4 1,700,876 - MPMX19_01622 0.15 -1.3 1,700,876 - MPMX19_01622 0.15 -0.1 1,700,876 - MPMX19_01622 0.15 +0.2 1,700,876 - MPMX19_01622 0.15 -0.5 1,700,876 - MPMX19_01622 0.15 +0.1 1,700,876 - MPMX19_01622 0.15 +1.3 1,700,876 - MPMX19_01622 0.15 +0.9 1,701,097 + MPMX19_01622 0.66 +1.0 1,701,097 + MPMX19_01622 0.66 +1.1 1,701,098 - MPMX19_01622 0.66 -1.1 1,701,098 - MPMX19_01622 0.66 +0.5 1,701,098 - MPMX19_01622 0.66 +0.5 1,701,098 - MPMX19_01622 0.66 +1.0 1,701,199 + MPMX19_01622 0.89 -0.1 1,701,199 + MPMX19_01622 0.89 -0.6 1,701,199 + MPMX19_01622 0.89 +0.1 1,701,199 + MPMX19_01622 0.89 +0.2 1,701,199 + MPMX19_01622 0.89 +0.3 1,701,200 - MPMX19_01622 0.89 -1.1 1,701,200 - MPMX19_01622 0.89 +0.9 1,701,245 - -0.6 1,701,245 - -0.4 1,701,245 - -0.7 1,701,307 - -2.4 1,701,307 - -0.3 1,701,307 - -0.1 1,701,307 - -1.0 1,701,307 - -1.5 1,701,307 - +0.7 1,701,307 - -2.4 1,701,307 - -1.0 1,701,307 - -2.1 1,701,307 - -1.2 1,701,307 - +0.2 1,701,307 - -0.4 1,701,307 - -0.4 1,701,328 + -0.4 1,701,328 + -0.3 1,701,328 + -0.7 1,701,328 + -0.9 1,701,328 + -0.7 1,701,328 + -0.3 1,701,328 + -0.2 1,701,329 - -2.5 1,701,329 - -1.1 1,701,329 - -1.4 1,701,329 - -0.9 1,701,329 - -0.3 1,701,329 - -1.7 1,701,329 - -0.5 1,701,329 - -0.4 1,701,329 - -0.3 1,701,329 - -0.8 1,701,329 - -0.8 1,701,329 - -0.7 1,701,346 + -1.3 1,701,346 + -0.6 1,701,346 + -2.4 1,701,346 + -2.1 1,701,347 - -1.0 1,701,347 - -1.6 1,701,347 - -1.0 1,701,347 - -0.3 1,701,347 - +0.5 1,701,347 - -0.4 1,701,347 - -0.8 1,701,394 + -1.7 1,701,394 + +1.5 1,701,394 + -0.9 1,701,394 + -1.7 1,701,394 + -0.7 1,701,394 + +1.5 1,701,394 + -2.9 1,701,394 + -0.4 1,701,394 + +1.4 1,701,394 + -0.1 1,701,394 + -1.3 1,701,394 + +1.7 1,701,394 + -0.6 1,701,395 - -0.4 1,701,395 - -1.9 1,701,395 - +0.1 1,701,395 - -0.5 1,701,395 - +0.4 1,701,395 - -1.8 1,701,395 - -0.4 1,701,395 - -1.7 1,701,395 - -1.2 1,701,395 - -0.2 1,701,395 - -1.4 1,701,395 - -0.3 1,701,424 + +1.1 1,701,430 + -0.3 1,701,430 + +0.1 1,701,430 + +0.2 1,701,430 + -2.0 1,701,430 + -0.6 1,701,430 + -1.0 1,701,431 + -0.4 1,701,431 - +0.4 1,701,431 - +0.3 1,701,431 - -0.0 1,701,601 + MPMX19_01623 0.15 -0.6 1,701,601 + MPMX19_01623 0.15 -0.4 1,701,601 + MPMX19_01623 0.15 -0.4 1,701,602 - MPMX19_01623 0.15 -1.4 1,701,757 + MPMX19_01623 0.24 +1.1 1,701,757 + MPMX19_01623 0.24 +0.0 1,701,757 + MPMX19_01623 0.24 -2.5 1,701,757 + MPMX19_01623 0.24 -0.2 1,701,758 - MPMX19_01623 0.24 +0.7 1,701,758 - MPMX19_01623 0.24 +0.2 1,701,758 - MPMX19_01623 0.24 -0.6 1,701,907 + MPMX19_01623 0.33 -1.1 1,701,907 + MPMX19_01623 0.33 -0.1 1,701,908 - MPMX19_01623 0.33 -0.6 1,701,947 + MPMX19_01623 0.36 -0.9 1,701,947 + MPMX19_01623 0.36 -0.9 1,701,947 + MPMX19_01623 0.36 -0.9 1,701,947 + MPMX19_01623 0.36 -0.3 1,701,947 + MPMX19_01623 0.36 -0.8 1,701,948 - MPMX19_01623 0.36 -1.2 1,701,948 - MPMX19_01623 0.36 -0.2 1,701,948 - MPMX19_01623 0.36 +0.7 1,701,948 - MPMX19_01623 0.36 -0.3 1,701,949 + MPMX19_01623 0.36 +1.2 1,701,949 + MPMX19_01623 0.36 -1.7 1,701,949 + MPMX19_01623 0.36 -0.4 1,701,949 + MPMX19_01623 0.36 -0.5 1,701,949 + MPMX19_01623 0.36 -0.7 1,701,949 + MPMX19_01623 0.36 -1.4 1,701,949 + MPMX19_01623 0.36 -0.7 1,701,949 + MPMX19_01623 0.36 +0.0 1,701,949 + MPMX19_01623 0.36 -1.4 1,701,949 + MPMX19_01623 0.36 +1.1 1,701,949 + MPMX19_01623 0.36 +0.5 1,701,949 + MPMX19_01623 0.36 +1.1 1,701,949 + MPMX19_01623 0.36 -0.4 1,701,949 + MPMX19_01623 0.36 +0.9 1,701,949 + MPMX19_01623 0.36 +0.1 1,701,949 + MPMX19_01623 0.36 -0.1 1,701,949 + MPMX19_01623 0.36 -2.0 1,701,949 + MPMX19_01623 0.36 +0.7 1,701,949 + MPMX19_01623 0.36 -0.4 1,701,950 - MPMX19_01623 0.36 +0.6 1,701,950 - MPMX19_01623 0.36 -0.3 1,701,950 - MPMX19_01623 0.36 -2.9 1,701,950 - MPMX19_01623 0.36 -0.7 1,701,950 - MPMX19_01623 0.36 +0.4 1,701,950 - MPMX19_01623 0.36 +1.5 1,701,950 - MPMX19_01623 0.36 -1.6 1,701,950 - MPMX19_01623 0.36 -1.3 1,701,950 - MPMX19_01623 0.36 +0.2 1,701,950 - MPMX19_01623 0.36 -0.6 1,701,950 - MPMX19_01623 0.36 +0.1 1,701,950 - MPMX19_01623 0.36 -1.0 1,701,950 - MPMX19_01623 0.36 -0.7 1,701,950 - MPMX19_01623 0.36 +0.1 1,701,950 - MPMX19_01623 0.36 -0.2 1,701,950 - MPMX19_01623 0.36 -0.7 1,701,950 - MPMX19_01623 0.36 -2.3 1,701,950 - MPMX19_01623 0.36 -0.8 1,702,018 + MPMX19_01623 0.40 -2.5 1,702,018 + MPMX19_01623 0.40 +0.0 1,702,018 + MPMX19_01623 0.40 +0.6 1,702,018 + MPMX19_01623 0.40 +0.3 1,702,018 + MPMX19_01623 0.40 -0.9 1,702,018 + MPMX19_01623 0.40 +0.4 1,702,018 + MPMX19_01623 0.40 -1.2 1,702,018 + MPMX19_01623 0.40 +0.4 1,702,018 + MPMX19_01623 0.40 -0.5 1,702,018 + MPMX19_01623 0.40 -0.4 1,702,019 - MPMX19_01623 0.40 -0.5 1,702,019 - MPMX19_01623 0.40 +0.2 1,702,019 - MPMX19_01623 0.40 -1.2 1,702,019 - MPMX19_01623 0.40 -1.0 1,702,019 - MPMX19_01623 0.40 -0.4 1,702,019 - MPMX19_01623 0.40 -0.6 1,702,019 - MPMX19_01623 0.40 -1.2 1,702,019 - MPMX19_01623 0.40 +1.4 1,702,204 + MPMX19_01623 0.51 +0.5 1,702,204 + MPMX19_01623 0.51 +0.7 1,702,204 + MPMX19_01623 0.51 -0.4 1,702,204 + MPMX19_01623 0.51 +0.1 1,702,204 + MPMX19_01623 0.51 +0.7 1,702,204 + MPMX19_01623 0.51 +0.9 1,702,204 + MPMX19_01623 0.51 -1.3 1,702,204 + MPMX19_01623 0.51 +0.5 1,702,204 + MPMX19_01623 0.51 -0.2 1,702,205 - MPMX19_01623 0.51 +0.6 1,702,205 - MPMX19_01623 0.51 +0.0 1,702,205 - MPMX19_01623 0.51 +0.9 1,702,205 - MPMX19_01623 0.51 -0.7 1,702,205 - MPMX19_01623 0.51 -1.5 1,702,205 - MPMX19_01623 0.51 -0.4 1,702,205 - MPMX19_01623 0.51 -0.5 1,702,205 - MPMX19_01623 0.51 +0.0 1,702,205 - MPMX19_01623 0.51 +0.4
Or see this region's nucleotide sequence