Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01542 and MPMX19_01543 are separated by 155 nucleotides MPMX19_01543 and MPMX19_01544 are separated by 104 nucleotides MPMX19_01544 and MPMX19_01545 are separated by 198 nucleotides
MPMX19_01542: MPMX19_01542 - Pseudopaline exporter CntI, at 1,615,035 to 1,615,937
_01542
MPMX19_01543: MPMX19_01543 - tRNA-Val, at 1,616,093 to 1,616,167
_01543
MPMX19_01544: MPMX19_01544 - DNA-binding protein HU, at 1,616,272 to 1,616,544
_01544
MPMX19_01545: MPMX19_01545 - Lon protease, at 1,616,743 to 1,619,157
_01545
Position (kb)
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1 at 1615.150 kb on + strand, within MPMX19_01542 at 1615.150 kb on + strand, within MPMX19_01542 at 1615.150 kb on + strand, within MPMX19_01542 at 1615.151 kb on - strand, within MPMX19_01542 at 1615.276 kb on + strand, within MPMX19_01542 at 1615.276 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.296 kb on + strand, within MPMX19_01542 at 1615.297 kb on - strand, within MPMX19_01542 at 1615.297 kb on - strand, within MPMX19_01542 at 1615.297 kb on - strand, within MPMX19_01542 at 1615.297 kb on - strand, within MPMX19_01542 at 1615.297 kb on - strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.338 kb on + strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.339 kb on - strand, within MPMX19_01542 at 1615.447 kb on + strand, within MPMX19_01542 at 1615.447 kb on + strand, within MPMX19_01542 at 1615.448 kb on - strand, within MPMX19_01542 at 1615.448 kb on - strand, within MPMX19_01542 at 1615.590 kb on + strand, within MPMX19_01542 at 1615.590 kb on + strand, within MPMX19_01542 at 1615.590 kb on + strand, within MPMX19_01542 at 1615.590 kb on + strand, within MPMX19_01542 at 1615.590 kb on + strand, within MPMX19_01542 at 1615.590 kb on + strand, within MPMX19_01542 at 1615.789 kb on + strand, within MPMX19_01542 at 1615.789 kb on + strand, within MPMX19_01542 at 1615.789 kb on + strand, within MPMX19_01542 at 1615.790 kb on - strand, within MPMX19_01542 at 1615.790 kb on - strand, within MPMX19_01542 at 1615.790 kb on - strand, within MPMX19_01542 at 1615.790 kb on - strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.804 kb on + strand, within MPMX19_01542 at 1615.805 kb on - strand, within MPMX19_01542 at 1615.805 kb on - strand, within MPMX19_01542 at 1615.805 kb on - strand, within MPMX19_01542 at 1615.805 kb on - strand, within MPMX19_01542 at 1615.805 kb on - strand, within MPMX19_01542 at 1615.880 kb on + strand at 1615.881 kb on - strand at 1615.881 kb on - strand at 1615.881 kb on - strand at 1615.963 kb on - strand at 1615.963 kb on - strand at 1615.963 kb on - strand at 1615.963 kb on - strand at 1615.963 kb on - strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.996 kb on + strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1615.997 kb on - strand at 1616.011 kb on + strand at 1616.076 kb on + strand at 1616.076 kb on + strand at 1616.076 kb on + strand at 1616.077 kb on - strand at 1616.077 kb on - strand at 1616.077 kb on - strand at 1616.231 kb on - strand at 1616.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,615,150 + MPMX19_01542 0.13 +0.9 1,615,150 + MPMX19_01542 0.13 -1.7 1,615,150 + MPMX19_01542 0.13 -0.9 1,615,151 - MPMX19_01542 0.13 -0.5 1,615,276 + MPMX19_01542 0.27 -0.1 1,615,276 + MPMX19_01542 0.27 +0.9 1,615,296 + MPMX19_01542 0.29 -0.4 1,615,296 + MPMX19_01542 0.29 -0.7 1,615,296 + MPMX19_01542 0.29 +0.3 1,615,296 + MPMX19_01542 0.29 +0.5 1,615,296 + MPMX19_01542 0.29 -0.4 1,615,296 + MPMX19_01542 0.29 -0.2 1,615,296 + MPMX19_01542 0.29 -0.3 1,615,297 - MPMX19_01542 0.29 -2.4 1,615,297 - MPMX19_01542 0.29 +0.1 1,615,297 - MPMX19_01542 0.29 +0.4 1,615,297 - MPMX19_01542 0.29 -0.6 1,615,297 - MPMX19_01542 0.29 -2.5 1,615,338 + MPMX19_01542 0.34 +0.7 1,615,338 + MPMX19_01542 0.34 -0.9 1,615,338 + MPMX19_01542 0.34 -1.6 1,615,338 + MPMX19_01542 0.34 -1.2 1,615,338 + MPMX19_01542 0.34 -0.7 1,615,338 + MPMX19_01542 0.34 -0.5 1,615,338 + MPMX19_01542 0.34 -1.3 1,615,338 + MPMX19_01542 0.34 -0.6 1,615,338 + MPMX19_01542 0.34 -0.3 1,615,338 + MPMX19_01542 0.34 +0.3 1,615,338 + MPMX19_01542 0.34 +0.0 1,615,338 + MPMX19_01542 0.34 -0.9 1,615,339 - MPMX19_01542 0.34 -2.0 1,615,339 - MPMX19_01542 0.34 -0.6 1,615,339 - MPMX19_01542 0.34 -0.6 1,615,339 - MPMX19_01542 0.34 -1.1 1,615,339 - MPMX19_01542 0.34 -2.2 1,615,339 - MPMX19_01542 0.34 +0.5 1,615,339 - MPMX19_01542 0.34 -1.0 1,615,339 - MPMX19_01542 0.34 +0.0 1,615,339 - MPMX19_01542 0.34 +0.1 1,615,339 - MPMX19_01542 0.34 +1.0 1,615,339 - MPMX19_01542 0.34 -0.8 1,615,339 - MPMX19_01542 0.34 -0.7 1,615,339 - MPMX19_01542 0.34 +0.6 1,615,339 - MPMX19_01542 0.34 +1.1 1,615,339 - MPMX19_01542 0.34 -1.5 1,615,339 - MPMX19_01542 0.34 -0.0 1,615,339 - MPMX19_01542 0.34 -2.0 1,615,339 - MPMX19_01542 0.34 -0.7 1,615,447 + MPMX19_01542 0.46 -0.1 1,615,447 + MPMX19_01542 0.46 -1.6 1,615,448 - MPMX19_01542 0.46 +0.8 1,615,448 - MPMX19_01542 0.46 -0.3 1,615,590 + MPMX19_01542 0.61 -1.3 1,615,590 + MPMX19_01542 0.61 -0.4 1,615,590 + MPMX19_01542 0.61 -0.1 1,615,590 + MPMX19_01542 0.61 -0.5 1,615,590 + MPMX19_01542 0.61 -1.4 1,615,590 + MPMX19_01542 0.61 +0.1 1,615,789 + MPMX19_01542 0.83 +0.1 1,615,789 + MPMX19_01542 0.83 +0.3 1,615,789 + MPMX19_01542 0.83 -2.1 1,615,790 - MPMX19_01542 0.84 +1.0 1,615,790 - MPMX19_01542 0.84 +0.1 1,615,790 - MPMX19_01542 0.84 -0.6 1,615,790 - MPMX19_01542 0.84 +0.6 1,615,804 + MPMX19_01542 0.85 +1.2 1,615,804 + MPMX19_01542 0.85 +1.1 1,615,804 + MPMX19_01542 0.85 -1.7 1,615,804 + MPMX19_01542 0.85 -1.3 1,615,804 + MPMX19_01542 0.85 +0.6 1,615,804 + MPMX19_01542 0.85 -0.8 1,615,804 + MPMX19_01542 0.85 -0.3 1,615,805 - MPMX19_01542 0.85 +0.2 1,615,805 - MPMX19_01542 0.85 +0.1 1,615,805 - MPMX19_01542 0.85 -0.0 1,615,805 - MPMX19_01542 0.85 +1.0 1,615,805 - MPMX19_01542 0.85 -1.1 1,615,880 + +0.3 1,615,881 - -0.2 1,615,881 - -1.5 1,615,881 - -0.1 1,615,963 - -0.3 1,615,963 - -0.4 1,615,963 - -0.8 1,615,963 - +0.5 1,615,963 - +1.0 1,615,996 + +0.7 1,615,996 + -0.2 1,615,996 + -1.1 1,615,996 + -0.3 1,615,996 + -0.4 1,615,996 + -0.8 1,615,996 + +0.4 1,615,996 + +0.1 1,615,996 + +0.9 1,615,996 + -0.6 1,615,997 - -0.5 1,615,997 - +0.1 1,615,997 - -0.4 1,615,997 - -0.7 1,615,997 - -0.6 1,615,997 - +1.2 1,615,997 - +0.1 1,615,997 - +1.5 1,615,997 - -1.3 1,615,997 - +0.1 1,615,997 - -0.9 1,615,997 - +0.1 1,615,997 - -0.5 1,615,997 - -0.9 1,615,997 - +1.4 1,615,997 - -2.6 1,615,997 - -0.7 1,615,997 - -1.4 1,615,997 - +0.9 1,615,997 - -1.9 1,615,997 - -0.5 1,615,997 - +0.1 1,616,011 + +1.3 1,616,076 + -1.3 1,616,076 + -0.6 1,616,076 + +0.1 1,616,077 - -0.6 1,616,077 - -0.1 1,616,077 - -1.0 1,616,231 - -1.4 1,616,274 - -1.7
Or see this region's nucleotide sequence