Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01448 and MPMX19_01449 are separated by 60 nucleotides MPMX19_01449 and MPMX19_01450 are separated by 184 nucleotides MPMX19_01450 and MPMX19_01451 are separated by 15 nucleotides
MPMX19_01448: MPMX19_01448 - hypothetical protein, at 1,519,691 to 1,519,876
_01448
MPMX19_01449: MPMX19_01449 - hypothetical protein, at 1,519,937 to 1,520,134
_01449
MPMX19_01450: MPMX19_01450 - hypothetical protein, at 1,520,319 to 1,520,726
_01450
MPMX19_01451: MPMX19_01451 - Regulator of RpoS, at 1,520,742 to 1,522,628
_01451
Position (kb)
1520
1521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1519.452 kb on - strand at 1519.452 kb on - strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.472 kb on + strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.473 kb on - strand at 1519.583 kb on + strand at 1519.583 kb on + strand at 1519.583 kb on + strand at 1519.583 kb on + strand at 1519.583 kb on + strand at 1519.583 kb on + strand at 1519.584 kb on - strand at 1519.584 kb on - strand at 1519.584 kb on - strand at 1519.584 kb on - strand at 1519.584 kb on - strand at 1519.593 kb on - strand at 1519.627 kb on + strand at 1519.669 kb on + strand at 1519.669 kb on + strand at 1519.670 kb on - strand at 1519.775 kb on + strand, within MPMX19_01448 at 1519.775 kb on + strand, within MPMX19_01448 at 1519.775 kb on + strand, within MPMX19_01448 at 1519.775 kb on + strand, within MPMX19_01448 at 1519.776 kb on - strand, within MPMX19_01448 at 1519.776 kb on - strand, within MPMX19_01448 at 1519.776 kb on - strand, within MPMX19_01448 at 1519.776 kb on - strand, within MPMX19_01448 at 1519.776 kb on - strand, within MPMX19_01448 at 1519.796 kb on + strand, within MPMX19_01448 at 1519.797 kb on - strand, within MPMX19_01448 at 1520.197 kb on + strand at 1520.197 kb on + strand at 1520.197 kb on + strand at 1520.197 kb on + strand at 1520.197 kb on + strand at 1520.197 kb on + strand at 1520.198 kb on - strand at 1520.198 kb on - strand at 1520.245 kb on + strand at 1520.245 kb on + strand at 1520.245 kb on + strand at 1520.245 kb on + strand at 1520.246 kb on - strand at 1520.246 kb on - strand at 1520.246 kb on - strand at 1520.246 kb on - strand at 1520.246 kb on - strand at 1520.306 kb on + strand at 1520.306 kb on + strand at 1520.306 kb on + strand at 1520.363 kb on - strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.535 kb on + strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.536 kb on - strand, within MPMX19_01450 at 1520.610 kb on + strand, within MPMX19_01450 at 1520.610 kb on + strand, within MPMX19_01450 at 1520.611 kb on - strand, within MPMX19_01450 at 1520.611 kb on - strand, within MPMX19_01450 at 1520.611 kb on - strand, within MPMX19_01450 at 1520.744 kb on - strand at 1520.821 kb on + strand at 1520.821 kb on + strand at 1520.821 kb on + strand at 1520.822 kb on - strand at 1520.822 kb on - strand at 1520.822 kb on - strand at 1520.822 kb on - strand at 1520.822 kb on - strand at 1520.822 kb on - strand at 1520.822 kb on - strand at 1520.980 kb on + strand, within MPMX19_01451 at 1520.980 kb on + strand, within MPMX19_01451 at 1520.980 kb on + strand, within MPMX19_01451 at 1520.980 kb on + strand, within MPMX19_01451 at 1520.980 kb on + strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1520.981 kb on - strand, within MPMX19_01451 at 1521.259 kb on + strand, within MPMX19_01451 at 1521.260 kb on - strand, within MPMX19_01451 at 1521.296 kb on + strand, within MPMX19_01451 at 1521.297 kb on - strand, within MPMX19_01451 at 1521.439 kb on + strand, within MPMX19_01451 at 1521.439 kb on + strand, within MPMX19_01451 at 1521.440 kb on - strand, within MPMX19_01451 at 1521.440 kb on - strand, within MPMX19_01451 at 1521.440 kb on - strand, within MPMX19_01451 at 1521.440 kb on - strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.580 kb on + strand, within MPMX19_01451 at 1521.581 kb on - strand, within MPMX19_01451 at 1521.581 kb on - strand, within MPMX19_01451
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,519,452 - -0.3 1,519,452 - -2.7 1,519,472 + -1.3 1,519,472 + -0.0 1,519,472 + +1.2 1,519,472 + -1.2 1,519,472 + -0.9 1,519,472 + -0.9 1,519,472 + -0.4 1,519,472 + -0.4 1,519,472 + +0.1 1,519,472 + -2.0 1,519,472 + -1.1 1,519,472 + -0.8 1,519,472 + +0.4 1,519,472 + -1.0 1,519,472 + -0.0 1,519,472 + +0.4 1,519,473 - +0.7 1,519,473 - -1.3 1,519,473 - +0.6 1,519,473 - -0.3 1,519,473 - -0.9 1,519,473 - -2.0 1,519,473 - -0.6 1,519,473 - +0.1 1,519,473 - +0.6 1,519,473 - -0.1 1,519,473 - +0.1 1,519,473 - -0.2 1,519,473 - -0.5 1,519,473 - +1.7 1,519,583 + +1.0 1,519,583 + +0.4 1,519,583 + -0.2 1,519,583 + -1.0 1,519,583 + +0.9 1,519,583 + -0.0 1,519,584 - -1.9 1,519,584 - +2.1 1,519,584 - -0.7 1,519,584 - -0.2 1,519,584 - +0.4 1,519,593 - +1.1 1,519,627 + -0.0 1,519,669 + +0.4 1,519,669 + +1.0 1,519,670 - +0.4 1,519,775 + MPMX19_01448 0.45 -0.4 1,519,775 + MPMX19_01448 0.45 -0.9 1,519,775 + MPMX19_01448 0.45 -1.7 1,519,775 + MPMX19_01448 0.45 -0.5 1,519,776 - MPMX19_01448 0.46 +0.4 1,519,776 - MPMX19_01448 0.46 -0.2 1,519,776 - MPMX19_01448 0.46 +0.1 1,519,776 - MPMX19_01448 0.46 -0.3 1,519,776 - MPMX19_01448 0.46 -0.1 1,519,796 + MPMX19_01448 0.56 -1.1 1,519,797 - MPMX19_01448 0.57 -1.1 1,520,197 + -0.9 1,520,197 + -1.1 1,520,197 + -0.6 1,520,197 + -1.0 1,520,197 + +0.1 1,520,197 + -0.1 1,520,198 - -0.0 1,520,198 - -0.1 1,520,245 + +0.1 1,520,245 + -1.1 1,520,245 + -1.3 1,520,245 + -1.2 1,520,246 - -1.7 1,520,246 - +0.0 1,520,246 - +0.0 1,520,246 - +0.7 1,520,246 - -0.6 1,520,306 + -2.5 1,520,306 + +1.3 1,520,306 + -0.9 1,520,363 - MPMX19_01450 0.11 -0.3 1,520,535 + MPMX19_01450 0.53 -0.2 1,520,535 + MPMX19_01450 0.53 +0.1 1,520,535 + MPMX19_01450 0.53 -1.7 1,520,535 + MPMX19_01450 0.53 -0.5 1,520,535 + MPMX19_01450 0.53 +0.8 1,520,535 + MPMX19_01450 0.53 +0.9 1,520,535 + MPMX19_01450 0.53 +0.6 1,520,535 + MPMX19_01450 0.53 -1.7 1,520,535 + MPMX19_01450 0.53 +0.7 1,520,535 + MPMX19_01450 0.53 -0.3 1,520,535 + MPMX19_01450 0.53 -2.9 1,520,535 + MPMX19_01450 0.53 +1.4 1,520,535 + MPMX19_01450 0.53 -2.4 1,520,536 - MPMX19_01450 0.53 -0.2 1,520,536 - MPMX19_01450 0.53 +0.5 1,520,536 - MPMX19_01450 0.53 +0.2 1,520,536 - MPMX19_01450 0.53 -0.4 1,520,536 - MPMX19_01450 0.53 -0.4 1,520,536 - MPMX19_01450 0.53 +1.0 1,520,536 - MPMX19_01450 0.53 -0.3 1,520,536 - MPMX19_01450 0.53 -0.4 1,520,536 - MPMX19_01450 0.53 -0.0 1,520,536 - MPMX19_01450 0.53 +0.1 1,520,536 - MPMX19_01450 0.53 +0.1 1,520,610 + MPMX19_01450 0.71 +0.8 1,520,610 + MPMX19_01450 0.71 -1.1 1,520,611 - MPMX19_01450 0.72 -0.5 1,520,611 - MPMX19_01450 0.72 +0.0 1,520,611 - MPMX19_01450 0.72 +0.5 1,520,744 - +0.3 1,520,821 + -0.0 1,520,821 + +0.9 1,520,821 + -0.9 1,520,822 - +0.5 1,520,822 - -0.2 1,520,822 - -0.6 1,520,822 - -1.4 1,520,822 - -0.3 1,520,822 - -0.1 1,520,822 - -0.9 1,520,980 + MPMX19_01451 0.13 -0.1 1,520,980 + MPMX19_01451 0.13 -1.9 1,520,980 + MPMX19_01451 0.13 -0.3 1,520,980 + MPMX19_01451 0.13 +0.5 1,520,980 + MPMX19_01451 0.13 -0.1 1,520,981 - MPMX19_01451 0.13 +1.1 1,520,981 - MPMX19_01451 0.13 -1.3 1,520,981 - MPMX19_01451 0.13 -0.2 1,520,981 - MPMX19_01451 0.13 +1.2 1,520,981 - MPMX19_01451 0.13 +1.7 1,520,981 - MPMX19_01451 0.13 +0.1 1,520,981 - MPMX19_01451 0.13 -1.7 1,520,981 - MPMX19_01451 0.13 -2.7 1,520,981 - MPMX19_01451 0.13 -1.4 1,520,981 - MPMX19_01451 0.13 -1.2 1,520,981 - MPMX19_01451 0.13 +0.1 1,521,259 + MPMX19_01451 0.27 -0.7 1,521,260 - MPMX19_01451 0.27 +0.8 1,521,296 + MPMX19_01451 0.29 +0.2 1,521,297 - MPMX19_01451 0.29 +0.0 1,521,439 + MPMX19_01451 0.37 +0.7 1,521,439 + MPMX19_01451 0.37 -0.6 1,521,440 - MPMX19_01451 0.37 -2.6 1,521,440 - MPMX19_01451 0.37 -1.4 1,521,440 - MPMX19_01451 0.37 -0.1 1,521,440 - MPMX19_01451 0.37 -1.4 1,521,580 + MPMX19_01451 0.44 -0.9 1,521,580 + MPMX19_01451 0.44 -0.2 1,521,580 + MPMX19_01451 0.44 +0.4 1,521,580 + MPMX19_01451 0.44 -2.5 1,521,580 + MPMX19_01451 0.44 +1.0 1,521,580 + MPMX19_01451 0.44 +0.1 1,521,580 + MPMX19_01451 0.44 -0.6 1,521,581 - MPMX19_01451 0.44 -1.0 1,521,581 - MPMX19_01451 0.44 +0.6
Or see this region's nucleotide sequence