Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00916 and MPMX19_00917 overlap by 4 nucleotides MPMX19_00917 and MPMX19_00918 are separated by 504 nucleotides MPMX19_00918 and MPMX19_00919 are separated by 503 nucleotides
MPMX19_00916: MPMX19_00916 - hypothetical protein, at 953,492 to 954,091
_00916
MPMX19_00917: MPMX19_00917 - hypothetical protein, at 954,088 to 954,555
_00917
MPMX19_00918: MPMX19_00918 - hypothetical protein, at 955,060 to 955,410
_00918
MPMX19_00919: MPMX19_00919 - hypothetical protein, at 955,914 to 956,615
_00919
Position (kb) 955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.175 kb on + strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.176 kb on - strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.427 kb on + strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.428 kb on - strand, within MPMX19_00917 at 954.517 kb on + strand at 954.517 kb on + strand at 954.517 kb on + strand at 954.517 kb on + strand at 954.518 kb on - strand at 954.518 kb on - strand at 954.518 kb on - strand at 954.518 kb on - strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.575 kb on + strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.576 kb on - strand at 954.704 kb on + strand at 954.705 kb on - strand at 954.705 kb on - strand at 954.705 kb on - strand at 954.964 kb on + strand at 954.964 kb on + strand at 954.964 kb on + strand at 954.964 kb on + strand at 954.964 kb on + strand at 954.965 kb on - strand at 954.965 kb on - strand at 954.965 kb on - strand at 954.965 kb on - strand at 954.965 kb on - strand at 954.965 kb on - strand at 955.001 kb on + strand at 955.001 kb on + strand at 955.001 kb on + strand at 955.001 kb on + strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.053 kb on + strand at 955.053 kb on + strand at 955.054 kb on - strand at 955.160 kb on + strand, within MPMX19_00918 at 955.160 kb on + strand, within MPMX19_00918 at 955.160 kb on + strand, within MPMX19_00918 at 955.160 kb on + strand, within MPMX19_00918 at 955.160 kb on + strand, within MPMX19_00918 at 955.160 kb on + strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.161 kb on - strand, within MPMX19_00918 at 955.228 kb on + strand, within MPMX19_00918 at 955.228 kb on + strand, within MPMX19_00918 at 955.228 kb on + strand, within MPMX19_00918 at 955.228 kb on + strand, within MPMX19_00918 at 955.228 kb on + strand, within MPMX19_00918 at 955.229 kb on - strand, within MPMX19_00918 at 955.229 kb on - strand, within MPMX19_00918 at 955.229 kb on - strand, within MPMX19_00918 at 955.229 kb on - strand, within MPMX19_00918 at 955.414 kb on + strand at 955.414 kb on + strand at 955.417 kb on - strand at 955.417 kb on - strand at 955.444 kb on + strand at 955.501 kb on + strand at 955.618 kb on + strand at 955.618 kb on + strand at 955.638 kb on - strand at 955.685 kb on + strand at 955.685 kb on + strand at 955.685 kb on + strand at 955.836 kb on + strand at 955.864 kb on + strand at 955.864 kb on + strand at 955.864 kb on + strand at 955.864 kb on + strand at 955.864 kb on + strand at 955.864 kb on + strand at 955.864 kb on + strand at 955.865 kb on - strand at 955.865 kb on - strand at 955.865 kb on - strand at 955.865 kb on - strand at 955.878 kb on + strand at 955.879 kb on - strand at 955.879 kb on - strand at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.130 kb on + strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.131 kb on - strand, within MPMX19_00919 at 956.133 kb on + strand, within MPMX19_00919 at 956.133 kb on + strand, within MPMX19_00919 at 956.133 kb on + strand, within MPMX19_00919 at 956.133 kb on + strand, within MPMX19_00919 at 956.133 kb on + strand, within MPMX19_00919
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 954,175 + MPMX19_00917 0.19 -0.3 954,175 + MPMX19_00917 0.19 -1.6 954,175 + MPMX19_00917 0.19 +0.1 954,175 + MPMX19_00917 0.19 -0.8 954,175 + MPMX19_00917 0.19 -0.7 954,175 + MPMX19_00917 0.19 +0.1 954,175 + MPMX19_00917 0.19 -0.3 954,175 + MPMX19_00917 0.19 +0.7 954,175 + MPMX19_00917 0.19 +0.6 954,175 + MPMX19_00917 0.19 +0.4 954,175 + MPMX19_00917 0.19 +0.5 954,175 + MPMX19_00917 0.19 -0.5 954,175 + MPMX19_00917 0.19 -2.3 954,175 + MPMX19_00917 0.19 -0.4 954,175 + MPMX19_00917 0.19 -1.1 954,175 + MPMX19_00917 0.19 -1.3 954,175 + MPMX19_00917 0.19 +0.7 954,176 - MPMX19_00917 0.19 -0.6 954,176 - MPMX19_00917 0.19 +0.4 954,176 - MPMX19_00917 0.19 -0.4 954,176 - MPMX19_00917 0.19 -2.0 954,176 - MPMX19_00917 0.19 -0.2 954,176 - MPMX19_00917 0.19 -1.3 954,176 - MPMX19_00917 0.19 +0.3 954,176 - MPMX19_00917 0.19 -0.6 954,176 - MPMX19_00917 0.19 -0.4 954,176 - MPMX19_00917 0.19 +0.1 954,176 - MPMX19_00917 0.19 -0.2 954,176 - MPMX19_00917 0.19 -0.8 954,176 - MPMX19_00917 0.19 +1.7 954,176 - MPMX19_00917 0.19 +0.1 954,176 - MPMX19_00917 0.19 -0.3 954,176 - MPMX19_00917 0.19 +0.2 954,176 - MPMX19_00917 0.19 -2.0 954,176 - MPMX19_00917 0.19 -0.9 954,176 - MPMX19_00917 0.19 +0.7 954,427 + MPMX19_00917 0.72 -1.0 954,427 + MPMX19_00917 0.72 -0.7 954,427 + MPMX19_00917 0.72 +0.1 954,427 + MPMX19_00917 0.72 -1.4 954,427 + MPMX19_00917 0.72 +0.9 954,427 + MPMX19_00917 0.72 -0.2 954,427 + MPMX19_00917 0.72 +0.6 954,427 + MPMX19_00917 0.72 -1.0 954,427 + MPMX19_00917 0.72 -0.4 954,427 + MPMX19_00917 0.72 -0.2 954,427 + MPMX19_00917 0.72 -0.6 954,427 + MPMX19_00917 0.72 -1.5 954,427 + MPMX19_00917 0.72 -0.1 954,427 + MPMX19_00917 0.72 -0.4 954,427 + MPMX19_00917 0.72 -0.2 954,427 + MPMX19_00917 0.72 +0.7 954,427 + MPMX19_00917 0.72 -0.0 954,427 + MPMX19_00917 0.72 -0.9 954,427 + MPMX19_00917 0.72 -0.5 954,427 + MPMX19_00917 0.72 -2.6 954,427 + MPMX19_00917 0.72 -0.5 954,427 + MPMX19_00917 0.72 -0.7 954,427 + MPMX19_00917 0.72 -0.2 954,427 + MPMX19_00917 0.72 -0.5 954,427 + MPMX19_00917 0.72 -1.6 954,427 + MPMX19_00917 0.72 -0.8 954,427 + MPMX19_00917 0.72 -0.7 954,427 + MPMX19_00917 0.72 -1.0 954,427 + MPMX19_00917 0.72 -0.3 954,428 - MPMX19_00917 0.73 +0.1 954,428 - MPMX19_00917 0.73 -0.4 954,428 - MPMX19_00917 0.73 +0.7 954,428 - MPMX19_00917 0.73 -0.4 954,428 - MPMX19_00917 0.73 -0.5 954,428 - MPMX19_00917 0.73 +0.5 954,428 - MPMX19_00917 0.73 -0.0 954,428 - MPMX19_00917 0.73 +0.4 954,428 - MPMX19_00917 0.73 -0.8 954,428 - MPMX19_00917 0.73 +0.2 954,428 - MPMX19_00917 0.73 +1.3 954,428 - MPMX19_00917 0.73 -1.5 954,428 - MPMX19_00917 0.73 -0.9 954,428 - MPMX19_00917 0.73 -0.8 954,428 - MPMX19_00917 0.73 -2.8 954,428 - MPMX19_00917 0.73 +0.7 954,428 - MPMX19_00917 0.73 +1.7 954,428 - MPMX19_00917 0.73 +0.2 954,428 - MPMX19_00917 0.73 +0.1 954,428 - MPMX19_00917 0.73 +0.1 954,428 - MPMX19_00917 0.73 -0.3 954,428 - MPMX19_00917 0.73 -0.2 954,428 - MPMX19_00917 0.73 +0.4 954,428 - MPMX19_00917 0.73 -0.6 954,428 - MPMX19_00917 0.73 +0.5 954,428 - MPMX19_00917 0.73 +0.1 954,428 - MPMX19_00917 0.73 -0.6 954,428 - MPMX19_00917 0.73 -0.6 954,428 - MPMX19_00917 0.73 -0.1 954,428 - MPMX19_00917 0.73 -1.8 954,428 - MPMX19_00917 0.73 -2.3 954,517 + -2.5 954,517 + +0.1 954,517 + -0.2 954,517 + +0.4 954,518 - -0.7 954,518 - -0.9 954,518 - +0.7 954,518 - -1.5 954,575 + +0.5 954,575 + -0.8 954,575 + -1.6 954,575 + +0.0 954,575 + -1.6 954,575 + -1.0 954,575 + -1.2 954,575 + -0.2 954,575 + +0.1 954,575 + +1.2 954,575 + +0.2 954,575 + +0.1 954,575 + -0.6 954,575 + -0.4 954,575 + +0.5 954,575 + -1.0 954,575 + -0.9 954,576 - -0.8 954,576 - -0.4 954,576 - +0.4 954,576 - -0.1 954,576 - +1.0 954,576 - -0.7 954,576 - +0.1 954,576 - -0.8 954,576 - +0.6 954,576 - -0.6 954,704 + +0.0 954,705 - -0.1 954,705 - -0.7 954,705 - +0.4 954,964 + -0.1 954,964 + -0.3 954,964 + +0.4 954,964 + -0.8 954,964 + -1.3 954,965 - -2.2 954,965 - -0.3 954,965 - -0.9 954,965 - +0.1 954,965 - -1.5 954,965 - +1.7 955,001 + -0.8 955,001 + -0.8 955,001 + +0.3 955,001 + -0.9 955,002 - +0.7 955,002 - -0.1 955,002 - +0.9 955,002 - +0.1 955,053 + +0.3 955,053 + -1.2 955,054 - +0.1 955,160 + MPMX19_00918 0.28 +0.9 955,160 + MPMX19_00918 0.28 -0.9 955,160 + MPMX19_00918 0.28 -1.0 955,160 + MPMX19_00918 0.28 +0.4 955,160 + MPMX19_00918 0.28 -0.1 955,160 + MPMX19_00918 0.28 -1.3 955,161 - MPMX19_00918 0.29 +1.9 955,161 - MPMX19_00918 0.29 +0.9 955,161 - MPMX19_00918 0.29 +0.1 955,161 - MPMX19_00918 0.29 -0.9 955,161 - MPMX19_00918 0.29 -0.5 955,161 - MPMX19_00918 0.29 -0.1 955,161 - MPMX19_00918 0.29 +0.7 955,161 - MPMX19_00918 0.29 -0.0 955,161 - MPMX19_00918 0.29 +1.5 955,161 - MPMX19_00918 0.29 +0.7 955,228 + MPMX19_00918 0.48 -0.5 955,228 + MPMX19_00918 0.48 -0.6 955,228 + MPMX19_00918 0.48 -0.4 955,228 + MPMX19_00918 0.48 -0.0 955,228 + MPMX19_00918 0.48 -1.3 955,229 - MPMX19_00918 0.48 -0.6 955,229 - MPMX19_00918 0.48 -1.5 955,229 - MPMX19_00918 0.48 -0.6 955,229 - MPMX19_00918 0.48 -0.4 955,414 + +1.0 955,414 + +0.6 955,417 - +0.6 955,417 - -0.3 955,444 + -0.3 955,501 + +1.1 955,618 + -0.3 955,618 + -2.4 955,638 - +1.1 955,685 + +0.1 955,685 + -0.8 955,685 + -1.1 955,836 + +0.0 955,864 + +0.3 955,864 + -0.2 955,864 + -1.3 955,864 + -0.1 955,864 + +0.0 955,864 + +0.7 955,864 + -2.5 955,865 - -0.2 955,865 - +0.2 955,865 - -0.6 955,865 - +0.7 955,878 + -0.1 955,879 - +0.2 955,879 - +1.0 956,130 + MPMX19_00919 0.31 +0.5 956,130 + MPMX19_00919 0.31 -1.5 956,130 + MPMX19_00919 0.31 -1.3 956,130 + MPMX19_00919 0.31 +0.1 956,130 + MPMX19_00919 0.31 -1.1 956,130 + MPMX19_00919 0.31 +0.3 956,130 + MPMX19_00919 0.31 +0.7 956,130 + MPMX19_00919 0.31 +1.3 956,130 + MPMX19_00919 0.31 +0.1 956,130 + MPMX19_00919 0.31 -0.7 956,131 - MPMX19_00919 0.31 -0.7 956,131 - MPMX19_00919 0.31 -1.4 956,131 - MPMX19_00919 0.31 -1.8 956,131 - MPMX19_00919 0.31 -0.5 956,131 - MPMX19_00919 0.31 +0.3 956,131 - MPMX19_00919 0.31 -0.8 956,131 - MPMX19_00919 0.31 -1.6 956,131 - MPMX19_00919 0.31 +0.8 956,131 - MPMX19_00919 0.31 +0.6 956,133 + MPMX19_00919 0.31 +0.8 956,133 + MPMX19_00919 0.31 -0.3 956,133 + MPMX19_00919 0.31 -0.9 956,133 + MPMX19_00919 0.31 +0.7 956,133 + MPMX19_00919 0.31 -0.2
Or see this region's nucleotide sequence