Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00856 and MPMX19_00857 are separated by 32 nucleotides MPMX19_00857 and MPMX19_00858 are separated by 115 nucleotides MPMX19_00858 and MPMX19_00859 overlap by 4 nucleotides MPMX19_00859 and MPMX19_00860 are separated by 22 nucleotides MPMX19_00860 and MPMX19_00861 overlap by 4 nucleotides
MPMX19_00856: MPMX19_00856 - Low affinity potassium transport system protein kup, at 889,377 to 891,275
_00856
MPMX19_00857: MPMX19_00857 - hypothetical protein, at 891,308 to 891,436
_00857
MPMX19_00858: MPMX19_00858 - Flagellar biosynthetic protein FliP, at 891,552 to 892,340
_00858
MPMX19_00859: MPMX19_00859 - hypothetical protein, at 892,337 to 892,678
_00859
MPMX19_00860: MPMX19_00860 - hypothetical protein, at 892,701 to 893,186
_00860
MPMX19_00861: MPMX19_00861 - hypothetical protein, at 893,183 to 893,566
_00861
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.554 kb on + strand, within MPMX19_00856 at 890.555 kb on - strand, within MPMX19_00856 at 890.555 kb on - strand, within MPMX19_00856 at 890.644 kb on + strand, within MPMX19_00856 at 890.644 kb on + strand, within MPMX19_00856 at 890.644 kb on + strand, within MPMX19_00856 at 890.645 kb on - strand, within MPMX19_00856 at 890.645 kb on - strand, within MPMX19_00856 at 890.645 kb on - strand, within MPMX19_00856 at 890.908 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.052 kb on + strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.053 kb on - strand, within MPMX19_00856 at 891.087 kb on + strand at 891.088 kb on - strand at 891.166 kb on + strand at 891.166 kb on + strand at 891.167 kb on - strand at 891.266 kb on + strand at 891.267 kb on - strand at 891.426 kb on + strand at 891.427 kb on - strand at 891.427 kb on - strand at 891.427 kb on - strand at 891.449 kb on + strand at 891.449 kb on + strand at 891.449 kb on + strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.450 kb on - strand at 891.596 kb on - strand at 891.596 kb on - strand at 891.596 kb on - strand at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.967 kb on + strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 891.968 kb on - strand, within MPMX19_00858 at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.660 kb on + strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.661 kb on - strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.663 kb on - strand at 892.709 kb on + strand at 892.783 kb on + strand, within MPMX19_00860 at 892.783 kb on + strand, within MPMX19_00860 at 892.783 kb on + strand, within MPMX19_00860 at 892.783 kb on + strand, within MPMX19_00860 at 892.784 kb on - strand, within MPMX19_00860 at 892.784 kb on - strand, within MPMX19_00860 at 892.784 kb on - strand, within MPMX19_00860 at 893.139 kb on + strand at 893.250 kb on + strand, within MPMX19_00861 at 893.250 kb on + strand, within MPMX19_00861 at 893.250 kb on + strand, within MPMX19_00861 at 893.251 kb on - strand, within MPMX19_00861 at 893.251 kb on - strand, within MPMX19_00861 at 893.251 kb on - strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.256 kb on + strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861 at 893.257 kb on - strand, within MPMX19_00861
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 890,554 + MPMX19_00856 0.62 +0.5 890,554 + MPMX19_00856 0.62 +0.5 890,554 + MPMX19_00856 0.62 -0.3 890,554 + MPMX19_00856 0.62 +1.1 890,554 + MPMX19_00856 0.62 +0.5 890,555 - MPMX19_00856 0.62 +2.7 890,555 - MPMX19_00856 0.62 -0.3 890,644 + MPMX19_00856 0.67 -0.9 890,644 + MPMX19_00856 0.67 +0.1 890,644 + MPMX19_00856 0.67 -1.9 890,645 - MPMX19_00856 0.67 +0.5 890,645 - MPMX19_00856 0.67 +0.3 890,645 - MPMX19_00856 0.67 -0.9 890,908 + MPMX19_00856 0.81 -1.1 891,052 + MPMX19_00856 0.88 -0.3 891,052 + MPMX19_00856 0.88 +0.4 891,052 + MPMX19_00856 0.88 -1.3 891,052 + MPMX19_00856 0.88 +0.5 891,052 + MPMX19_00856 0.88 -0.8 891,052 + MPMX19_00856 0.88 -1.1 891,052 + MPMX19_00856 0.88 +0.0 891,052 + MPMX19_00856 0.88 +0.1 891,052 + MPMX19_00856 0.88 +0.1 891,052 + MPMX19_00856 0.88 -1.3 891,052 + MPMX19_00856 0.88 -1.7 891,052 + MPMX19_00856 0.88 +1.7 891,052 + MPMX19_00856 0.88 -1.9 891,052 + MPMX19_00856 0.88 -0.5 891,053 - MPMX19_00856 0.88 +1.1 891,053 - MPMX19_00856 0.88 -0.0 891,053 - MPMX19_00856 0.88 -1.5 891,053 - MPMX19_00856 0.88 -1.1 891,053 - MPMX19_00856 0.88 -0.2 891,053 - MPMX19_00856 0.88 +0.5 891,053 - MPMX19_00856 0.88 -2.1 891,053 - MPMX19_00856 0.88 -1.0 891,053 - MPMX19_00856 0.88 -0.2 891,087 + +0.1 891,088 - -0.1 891,166 + +0.1 891,166 + +1.1 891,167 - +0.1 891,266 + -1.5 891,267 - +0.6 891,426 + +1.5 891,427 - +0.9 891,427 - -0.3 891,427 - -0.6 891,449 + -1.5 891,449 + +0.5 891,449 + +0.1 891,450 - +1.7 891,450 - -1.0 891,450 - +1.1 891,450 - +1.5 891,450 - -2.0 891,450 - -1.0 891,450 - -1.1 891,450 - +0.7 891,450 - -1.2 891,450 - +0.4 891,450 - +1.7 891,450 - -0.6 891,450 - -1.0 891,596 - -0.2 891,596 - -1.3 891,596 - +0.9 891,967 + MPMX19_00858 0.53 -0.5 891,967 + MPMX19_00858 0.53 -1.3 891,967 + MPMX19_00858 0.53 +0.1 891,967 + MPMX19_00858 0.53 +2.1 891,967 + MPMX19_00858 0.53 -0.7 891,967 + MPMX19_00858 0.53 +0.2 891,967 + MPMX19_00858 0.53 -1.5 891,967 + MPMX19_00858 0.53 -1.5 891,967 + MPMX19_00858 0.53 -0.6 891,967 + MPMX19_00858 0.53 -0.4 891,967 + MPMX19_00858 0.53 -0.5 891,967 + MPMX19_00858 0.53 -0.7 891,968 - MPMX19_00858 0.53 -0.3 891,968 - MPMX19_00858 0.53 -1.6 891,968 - MPMX19_00858 0.53 -0.7 891,968 - MPMX19_00858 0.53 -1.3 891,968 - MPMX19_00858 0.53 +0.3 891,968 - MPMX19_00858 0.53 +0.1 891,968 - MPMX19_00858 0.53 -0.2 891,968 - MPMX19_00858 0.53 -1.2 891,968 - MPMX19_00858 0.53 -2.4 891,968 - MPMX19_00858 0.53 -2.6 891,968 - MPMX19_00858 0.53 -0.9 892,660 + -0.7 892,660 + -1.3 892,660 + +1.4 892,660 + -2.1 892,660 + -1.7 892,660 + +0.6 892,660 + -0.7 892,660 + -1.2 892,661 - -0.4 892,661 - +0.4 892,661 - -1.0 892,661 - -0.9 892,661 - -0.5 892,661 - -0.7 892,661 - -0.8 892,662 + +0.1 892,662 + -0.7 892,662 + -0.3 892,662 + +0.3 892,662 + -1.7 892,662 + -0.6 892,662 + -1.2 892,662 + -0.8 892,662 + -0.6 892,662 + -1.4 892,662 + -1.6 892,662 + +0.3 892,662 + -2.2 892,662 + -0.7 892,662 + -0.9 892,662 + +0.0 892,662 + -2.4 892,662 + -1.0 892,662 + -1.5 892,662 + -1.4 892,662 + -0.8 892,662 + -0.7 892,662 + -0.7 892,662 + -0.7 892,662 + -1.4 892,663 - +0.5 892,663 - -2.5 892,663 - +1.5 892,663 - -0.8 892,663 - -0.8 892,663 - -0.9 892,663 - -0.0 892,663 - +0.9 892,663 - -1.8 892,663 - -1.4 892,663 - -1.5 892,663 - -0.8 892,663 - -1.5 892,663 - +0.6 892,663 - +0.3 892,663 - -1.8 892,663 - -1.6 892,663 - -0.2 892,663 - -2.5 892,663 - -1.5 892,663 - -1.7 892,663 - +0.1 892,663 - +0.6 892,663 - -0.4 892,709 + +0.5 892,783 + MPMX19_00860 0.17 +0.0 892,783 + MPMX19_00860 0.17 +0.5 892,783 + MPMX19_00860 0.17 +0.5 892,783 + MPMX19_00860 0.17 -3.2 892,784 - MPMX19_00860 0.17 -1.0 892,784 - MPMX19_00860 0.17 -0.4 892,784 - MPMX19_00860 0.17 -2.3 893,139 + +0.1 893,250 + MPMX19_00861 0.17 -1.5 893,250 + MPMX19_00861 0.17 +0.3 893,250 + MPMX19_00861 0.17 +0.5 893,251 - MPMX19_00861 0.18 +0.9 893,251 - MPMX19_00861 0.18 -2.6 893,251 - MPMX19_00861 0.18 -0.5 893,256 + MPMX19_00861 0.19 -1.2 893,256 + MPMX19_00861 0.19 -0.1 893,256 + MPMX19_00861 0.19 -0.6 893,256 + MPMX19_00861 0.19 +0.6 893,256 + MPMX19_00861 0.19 -1.0 893,256 + MPMX19_00861 0.19 -0.6 893,256 + MPMX19_00861 0.19 +1.1 893,256 + MPMX19_00861 0.19 -1.1 893,256 + MPMX19_00861 0.19 +0.9 893,256 + MPMX19_00861 0.19 +0.3 893,256 + MPMX19_00861 0.19 -0.5 893,256 + MPMX19_00861 0.19 +0.4 893,256 + MPMX19_00861 0.19 -0.9 893,256 + MPMX19_00861 0.19 -0.2 893,256 + MPMX19_00861 0.19 -0.9 893,256 + MPMX19_00861 0.19 -1.5 893,256 + MPMX19_00861 0.19 -0.5 893,256 + MPMX19_00861 0.19 -0.2 893,256 + MPMX19_00861 0.19 -1.2 893,256 + MPMX19_00861 0.19 -0.7 893,256 + MPMX19_00861 0.19 -0.3 893,256 + MPMX19_00861 0.19 +1.0 893,256 + MPMX19_00861 0.19 +0.4 893,256 + MPMX19_00861 0.19 +0.1 893,256 + MPMX19_00861 0.19 -1.9 893,256 + MPMX19_00861 0.19 +0.7 893,257 - MPMX19_00861 0.19 +0.6 893,257 - MPMX19_00861 0.19 -0.7 893,257 - MPMX19_00861 0.19 -1.1 893,257 - MPMX19_00861 0.19 +0.1 893,257 - MPMX19_00861 0.19 -0.5 893,257 - MPMX19_00861 0.19 +0.3 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 -1.6 893,257 - MPMX19_00861 0.19 -1.9 893,257 - MPMX19_00861 0.19 -1.0 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 -0.7 893,257 - MPMX19_00861 0.19 -1.0 893,257 - MPMX19_00861 0.19 -0.2 893,257 - MPMX19_00861 0.19 -0.5 893,257 - MPMX19_00861 0.19 +0.6 893,257 - MPMX19_00861 0.19 +0.0 893,257 - MPMX19_00861 0.19 +0.2 893,257 - MPMX19_00861 0.19 -0.8 893,257 - MPMX19_00861 0.19 -0.7 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 +0.5 893,257 - MPMX19_00861 0.19 +0.5 893,257 - MPMX19_00861 0.19 -2.0 893,257 - MPMX19_00861 0.19 +1.2 893,257 - MPMX19_00861 0.19 +0.0 893,257 - MPMX19_00861 0.19 -0.3 893,257 - MPMX19_00861 0.19 +0.0 893,257 - MPMX19_00861 0.19 -2.2 893,257 - MPMX19_00861 0.19 -1.1 893,257 - MPMX19_00861 0.19 -1.1 893,257 - MPMX19_00861 0.19 -0.6 893,257 - MPMX19_00861 0.19 -1.3 893,257 - MPMX19_00861 0.19 +0.2 893,257 - MPMX19_00861 0.19 -0.9 893,257 - MPMX19_00861 0.19 -0.1
Or see this region's nucleotide sequence