Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00804

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00803 and MPMX19_00804 are separated by 293 nucleotidesMPMX19_00804 and MPMX19_00805 overlap by 1 nucleotides MPMX19_00803: MPMX19_00803 - hypothetical protein, at 823,895 to 825,967 _00803 MPMX19_00804: MPMX19_00804 - Glutamate-pyruvate aminotransferase AlaC, at 826,261 to 827,535 _00804 MPMX19_00805: MPMX19_00805 - Homoserine dehydrogenase, at 827,535 to 828,839 _00805 Position (kb) 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.291 kb on + strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.292 kb on - strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.504 kb on + strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.505 kb on - strand, within MPMX19_00803at 825.970 kb on + strandat 825.970 kb on + strandat 825.970 kb on + strandat 825.970 kb on + strandat 825.970 kb on + strandat 825.970 kb on + strandat 825.971 kb on - strandat 825.971 kb on - strandat 825.971 kb on - strandat 825.971 kb on - strandat 825.971 kb on - strandat 826.027 kb on + strandat 826.027 kb on + strandat 826.027 kb on + strandat 826.027 kb on + strandat 826.027 kb on + strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.028 kb on - strandat 826.036 kb on + strandat 826.036 kb on + strandat 826.036 kb on + strandat 826.036 kb on + strandat 826.037 kb on - strandat 826.037 kb on - strandat 826.037 kb on - strandat 826.037 kb on - strandat 826.037 kb on - strandat 826.037 kb on - strandat 826.055 kb on + strandat 826.055 kb on + strandat 826.055 kb on + strandat 826.055 kb on + strandat 826.056 kb on - strandat 826.056 kb on - strandat 826.056 kb on - strandat 826.056 kb on - strandat 826.088 kb on + strandat 826.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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825,291 + MPMX19_00803 0.67 -0.0
825,291 + MPMX19_00803 0.67 +0.7
825,291 + MPMX19_00803 0.67 -0.3
825,291 + MPMX19_00803 0.67 -0.8
825,291 + MPMX19_00803 0.67 -1.4
825,291 + MPMX19_00803 0.67 +0.1
825,291 + MPMX19_00803 0.67 -1.9
825,291 + MPMX19_00803 0.67 -0.1
825,291 + MPMX19_00803 0.67 -1.6
825,291 + MPMX19_00803 0.67 -0.9
825,291 + MPMX19_00803 0.67 -1.1
825,292 - MPMX19_00803 0.67 -0.2
825,292 - MPMX19_00803 0.67 +0.6
825,292 - MPMX19_00803 0.67 -1.5
825,292 - MPMX19_00803 0.67 -1.1
825,292 - MPMX19_00803 0.67 +1.9
825,292 - MPMX19_00803 0.67 -1.4
825,292 - MPMX19_00803 0.67 -0.9
825,292 - MPMX19_00803 0.67 +0.0
825,292 - MPMX19_00803 0.67 -1.5
825,292 - MPMX19_00803 0.67 +0.5
825,292 - MPMX19_00803 0.67 -0.1
825,292 - MPMX19_00803 0.67 -0.5
825,292 - MPMX19_00803 0.67 -2.1
825,292 - MPMX19_00803 0.67 -0.5
825,292 - MPMX19_00803 0.67 +0.2
825,292 - MPMX19_00803 0.67 -2.2
825,504 + MPMX19_00803 0.78 +0.0
825,504 + MPMX19_00803 0.78 -1.3
825,504 + MPMX19_00803 0.78 -1.3
825,504 + MPMX19_00803 0.78 -0.4
825,504 + MPMX19_00803 0.78 -1.1
825,504 + MPMX19_00803 0.78 +0.0
825,504 + MPMX19_00803 0.78 -0.4
825,504 + MPMX19_00803 0.78 +0.5
825,504 + MPMX19_00803 0.78 -0.9
825,504 + MPMX19_00803 0.78 -2.8
825,504 + MPMX19_00803 0.78 -0.1
825,505 - MPMX19_00803 0.78 -1.2
825,505 - MPMX19_00803 0.78 -1.6
825,505 - MPMX19_00803 0.78 -0.0
825,505 - MPMX19_00803 0.78 -0.0
825,505 - MPMX19_00803 0.78 -0.6
825,505 - MPMX19_00803 0.78 -0.2
825,505 - MPMX19_00803 0.78 -1.3
825,505 - MPMX19_00803 0.78 -2.2
825,505 - MPMX19_00803 0.78 -1.3
825,970 + -0.5
825,970 + -0.5
825,970 + -0.3
825,970 + -1.6
825,970 + -0.0
825,970 + +0.1
825,971 - -1.4
825,971 - -0.1
825,971 - +0.4
825,971 - +0.9
825,971 - -1.0
826,027 + -0.2
826,027 + +0.7
826,027 + +0.0
826,027 + +0.5
826,027 + +0.1
826,028 - -2.5
826,028 - -1.5
826,028 - -2.5
826,028 - -0.6
826,028 - +0.7
826,028 - +0.3
826,028 - +0.2
826,028 - -2.3
826,028 - -0.2
826,036 + -1.4
826,036 + -0.1
826,036 + +0.5
826,036 + +0.3
826,037 - +0.1
826,037 - -0.2
826,037 - -0.4
826,037 - +0.7
826,037 - -0.0
826,037 - -0.6
826,055 + -0.7
826,055 + +0.3
826,055 + +0.0
826,055 + -1.5
826,056 - +0.2
826,056 - -1.1
826,056 - -1.3
826,056 - +0.4
826,088 + +0.7
826,089 - -0.6

Or see this region's nucleotide sequence