Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00763

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00761 and MPMX19_00762 are separated by 145 nucleotidesMPMX19_00762 and MPMX19_00763 are separated by 94 nucleotidesMPMX19_00763 and MPMX19_00764 are separated by 261 nucleotidesMPMX19_00764 and MPMX19_00765 overlap by 1 nucleotides MPMX19_00761: MPMX19_00761 - RNA polymerase sigma factor RpoD, at 777,063 to 779,096 _00761 MPMX19_00762: MPMX19_00762 - tRNA-Met, at 779,242 to 779,317 _00762 MPMX19_00763: MPMX19_00763 - hypothetical protein, at 779,412 to 781,043 _00763 MPMX19_00764: MPMX19_00764 - ECF RNA polymerase sigma factor EcfG, at 781,305 to 781,814 _00764 MPMX19_00765: MPMX19_00765 - hypothetical protein, at 781,814 to 782,770 _00765 Position (kb) 779 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.589 kb on + strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.590 kb on - strand, within MPMX19_00763at 779.755 kb on - strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.156 kb on + strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.157 kb on - strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.271 kb on + strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.272 kb on - strand, within MPMX19_00763at 780.297 kb on + strand, within MPMX19_00763at 780.298 kb on - strand, within MPMX19_00763at 780.403 kb on - strand, within MPMX19_00763at 780.403 kb on - strand, within MPMX19_00763at 780.423 kb on + strand, within MPMX19_00763at 780.424 kb on - strand, within MPMX19_00763at 780.424 kb on - strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.501 kb on + strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.502 kb on - strand, within MPMX19_00763at 780.925 kb on - strandat 780.943 kb on - strandat 780.943 kb on - strandat 781.111 kb on + strandat 781.111 kb on + strandat 781.111 kb on + strandat 781.111 kb on + strandat 781.111 kb on + strandat 781.111 kb on + strandat 781.111 kb on + strandat 781.112 kb on - strandat 781.112 kb on - strandat 781.112 kb on - strandat 781.112 kb on - strandat 781.112 kb on - strandat 781.112 kb on - strandat 781.112 kb on - strandat 781.123 kb on + strandat 781.123 kb on + strandat 781.124 kb on - strandat 781.124 kb on - strandat 781.124 kb on - strandat 781.124 kb on - strandat 781.124 kb on - strandat 781.153 kb on + strandat 781.153 kb on + strandat 781.153 kb on + strandat 781.153 kb on + strandat 781.153 kb on + strandat 781.153 kb on + strandat 781.153 kb on + strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.154 kb on - strandat 781.288 kb on - strandat 781.686 kb on + strand, within MPMX19_00764at 781.686 kb on + strand, within MPMX19_00764at 781.686 kb on + strand, within MPMX19_00764at 781.687 kb on - strand, within MPMX19_00764at 781.687 kb on - strand, within MPMX19_00764at 781.687 kb on - strand, within MPMX19_00764at 781.687 kb on - strand, within MPMX19_00764at 781.793 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
779,589 + MPMX19_00763 0.11 -0.3
779,589 + MPMX19_00763 0.11 -0.1
779,589 + MPMX19_00763 0.11 -1.3
779,589 + MPMX19_00763 0.11 -0.2
779,589 + MPMX19_00763 0.11 -0.2
779,590 - MPMX19_00763 0.11 -0.9
779,590 - MPMX19_00763 0.11 -1.1
779,590 - MPMX19_00763 0.11 +1.1
779,590 - MPMX19_00763 0.11 +0.0
779,755 - MPMX19_00763 0.21 -1.1
780,156 + MPMX19_00763 0.46 -1.1
780,156 + MPMX19_00763 0.46 -0.1
780,156 + MPMX19_00763 0.46 -0.4
780,156 + MPMX19_00763 0.46 -0.7
780,156 + MPMX19_00763 0.46 -2.4
780,157 - MPMX19_00763 0.46 -0.8
780,157 - MPMX19_00763 0.46 +0.3
780,157 - MPMX19_00763 0.46 +0.7
780,157 - MPMX19_00763 0.46 -0.3
780,271 + MPMX19_00763 0.53 -1.4
780,271 + MPMX19_00763 0.53 -0.7
780,271 + MPMX19_00763 0.53 -1.1
780,271 + MPMX19_00763 0.53 +0.7
780,271 + MPMX19_00763 0.53 -0.6
780,271 + MPMX19_00763 0.53 -0.7
780,271 + MPMX19_00763 0.53 -0.6
780,271 + MPMX19_00763 0.53 -1.9
780,271 + MPMX19_00763 0.53 +0.1
780,271 + MPMX19_00763 0.53 -1.3
780,271 + MPMX19_00763 0.53 -0.2
780,271 + MPMX19_00763 0.53 +0.6
780,271 + MPMX19_00763 0.53 -0.0
780,272 - MPMX19_00763 0.53 -0.5
780,272 - MPMX19_00763 0.53 +0.2
780,272 - MPMX19_00763 0.53 -0.9
780,272 - MPMX19_00763 0.53 +0.4
780,272 - MPMX19_00763 0.53 +0.6
780,272 - MPMX19_00763 0.53 -0.3
780,272 - MPMX19_00763 0.53 +0.4
780,272 - MPMX19_00763 0.53 +0.9
780,297 + MPMX19_00763 0.54 -0.5
780,298 - MPMX19_00763 0.54 +0.3
780,403 - MPMX19_00763 0.61 +1.4
780,403 - MPMX19_00763 0.61 -0.2
780,423 + MPMX19_00763 0.62 +0.5
780,424 - MPMX19_00763 0.62 -1.4
780,424 - MPMX19_00763 0.62 -2.6
780,501 + MPMX19_00763 0.67 +0.1
780,501 + MPMX19_00763 0.67 -0.7
780,501 + MPMX19_00763 0.67 -0.2
780,501 + MPMX19_00763 0.67 +1.1
780,501 + MPMX19_00763 0.67 +0.3
780,501 + MPMX19_00763 0.67 +1.5
780,501 + MPMX19_00763 0.67 -1.1
780,502 - MPMX19_00763 0.67 +0.4
780,502 - MPMX19_00763 0.67 -0.1
780,502 - MPMX19_00763 0.67 -0.9
780,502 - MPMX19_00763 0.67 -2.1
780,502 - MPMX19_00763 0.67 +0.5
780,502 - MPMX19_00763 0.67 +0.4
780,502 - MPMX19_00763 0.67 +0.1
780,925 - -2.1
780,943 - -0.3
780,943 - -0.0
781,111 + +0.7
781,111 + -0.3
781,111 + +0.4
781,111 + +0.6
781,111 + +0.2
781,111 + -0.2
781,111 + -0.7
781,112 - +0.6
781,112 - -0.2
781,112 - +1.7
781,112 - -1.4
781,112 - -1.7
781,112 - +0.3
781,112 - -1.7
781,123 + +0.7
781,123 + -1.7
781,124 - -1.3
781,124 - -1.7
781,124 - -1.1
781,124 - -0.5
781,124 - -0.3
781,153 + -0.7
781,153 + +0.2
781,153 + -1.2
781,153 + +1.9
781,153 + -0.6
781,153 + -1.1
781,153 + -0.6
781,154 - -0.8
781,154 - +0.3
781,154 - -1.9
781,154 - +1.1
781,154 - +1.5
781,154 - -0.4
781,154 - +0.3
781,154 - -0.6
781,154 - -1.2
781,154 - -0.3
781,154 - +0.6
781,288 - -1.4
781,686 + MPMX19_00764 0.75 -0.8
781,686 + MPMX19_00764 0.75 -0.7
781,686 + MPMX19_00764 0.75 -0.4
781,687 - MPMX19_00764 0.75 +0.7
781,687 - MPMX19_00764 0.75 -0.3
781,687 - MPMX19_00764 0.75 +0.4
781,687 - MPMX19_00764 0.75 +1.1
781,793 + +0.2

Or see this region's nucleotide sequence